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Travis J. Wheeler
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2020 – today
- 2024
- [j10]Tim Anderson, Travis J. Wheeler:
An FPGA-based hardware accelerator supporting sensitive sequence homology filtering with profile hidden Markov models. BMC Bioinform. 25(1): 247 (2024) - [i2]Anna C. Marbut, John W. Chandler, Travis J. Wheeler:
Exploring the Impact of a Transformer's Latent Space Geometry on Downstream Task Performance. CoRR abs/2406.12159 (2024) - 2023
- [c7]Anna C. Marbut, Katy McKinney-Bock, Travis J. Wheeler:
Reliable Measures of Spread in High Dimensional Latent Spaces. ICML 2023: 23871-23885 - 2022
- [i1]Anna C. Marbut, Katy McKinney-Bock, Travis J. Wheeler:
Reliable Measures of Spread in High Dimensional Latent Spaces. CoRR abs/2212.08172 (2022) - 2021
- [j9]Tim Anderson, Travis J. Wheeler
:
An optimized FM-index library for nucleotide and amino acid search. Algorithms Mol. Biol. 16(1): 25 (2021) - [e2]Carlos Martín-Vide
Algorithms for Computational Biology - 8th International Conference, AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings. Lecture Notes in Computer Science 12715, Springer 2021, ISBN 978-3-030-74431-1 [contents] - 2020
- [e1]Carlos Martín-Vide
Algorithms for Computational Biology - 7th International Conference, AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings. Lecture Notes in Computer Science 12099, Springer 2020, ISBN 978-3-030-42265-3 [contents]Due to COVID-19 postponed to AlCoB 2021.
2010 – 2019
- 2019
- [j8]Peter V. Hornbeck
15 years of PhosphoSitePlus®: integrating post-translationally modified sites, disease variants and isoforms. Nucleic Acids Res. 47(Database-Issue): D433-D441 (2019) - 2018
- [c6]Daniel Olson
ULTRA: A Model Based Tool to Detect Tandem Repeats. BCB 2018: 37-46 - [c5]Alex S. Nord, Peter V. Hornbeck
Splice-Aware Multiple Sequence Alignment of Protein Isoforms. BCB 2018: 200-210 - 2016
- [j7]Robert Hubley, Robert D. Finn, Jody Clements
The Dfam database of repetitive DNA families. Nucleic Acids Res. 44(Database-Issue): 81-89 (2016) - 2015
- [j6]Robert D. Finn
HMMER web server: 2015 update. Nucleic Acids Res. 43(Webserver-Issue): W30-W38 (2015) - 2014
- [j5]Travis J. Wheeler
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models. BMC Bioinform. 15: 7 (2014) - 2013
- [j4]Travis J. Wheeler
nhmmer: DNA homology search with profile HMMs. Bioinform. 29(19): 2487-2489 (2013) - [j3]Travis J. Wheeler
Dfam: a database of repetitive DNA based on profile hidden Markov models. Nucleic Acids Res. 41(Database-Issue): 70-82 (2013) - 2012
- [c4]Dan F. DeBlasio
Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising. RECOMB 2012: 45-59 - 2010
- [j2]John D. Kececioglu, Eagu Kim, Travis J. Wheeler
Aligning Protein Sequences with Predicted Secondary Structure. J. Comput. Biol. 17(3): 561-580 (2010)
2000 – 2009
- 2009
- [b1]Travis John Wheeler:
Efficient Construction of accurate Multiple alignments and Large-Scale phylogenies. University of Arizona, Tucson, USA, 2009 - [c3]Eagu Kim, Travis J. Wheeler, John D. Kececioglu:
Learning Models for Aligning Protein Sequences with Predicted Secondary Structure. RECOMB 2009: 512-531 - [c2]Travis J. Wheeler:
Large-Scale Neighbor-Joining with NINJA. WABI 2009: 375-389 - 2007
- [c1]Travis J. Wheeler
Multiple alignment by aligning alignments. ISMB/ECCB (Supplement of Bioinformatics) 2007: 559-568 - 2005
- [j1]Celine A. Hayden, Travis J. Wheeler
Evaluating and improving cDNA sequence quality with cQC. Bioinform. 21(24): 4414-4415 (2005)
Coauthor Index
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last updated on 2024-10-07 22:17 CEST by the dblp team
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