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Zuoshuang Xiang
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2020 – today
- 2021
- [j24]Edison Ong
, Michael F. Cooke
Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning. Nucleic Acids Res. 49(Webserver-Issue): 671-678 (2021)
2010 – 2019
- 2019
- [j23]Samantha Sayers, Li Li, Edison Ong
Victors: a web-based knowledge base of virulence factors in human and animal pathogens. Nucleic Acids Res. 47(Database-Issue): D693-D700 (2019) - 2018
- [j22]Yongqun He
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability. J. Biomed. Semant. 9(1): 3:1-3:10 (2018) - 2017
- [j21]Edison Ong
Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration. Nucleic Acids Res. 45(Database-Issue): D347-D352 (2017) - 2016
- [j20]Abra Guo, Rebecca Racz
Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events. J. Biomed. Semant. 7: 29 (2016) - [c11]Edison Ong, Zuoshuang Xiang, Jie Zheng, Barry Smith, Yongqun He:
Ontobull and BFOConvert: Web-based Programs to Support Automatic Ontology Conversion. ICBO/BioCreative 2016 - [c10]Arzucan Özgür, Junguk Hur, Zuoshuang Xiang, Edison Ong, Dragomir R. Radev, Yongqun He:
Ignet: A Centrality and INO-based Web System for Analyzing and Visualizing Literature-mined Networks. ICBO/BioCreative 2016 - 2015
- [j19]Junguk Hur
Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions. J. Biomed. Semant. 6: 2 (2015) - [j18]Zuoshuang Xiang, Jie Zheng, Yu Lin, Yongqun He
Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns. J. Biomed. Semant. 6: 4 (2015) - [j17]Yu Lin, Zuoshuang Xiang, Yongqun He
Ontology-based representation and analysis of host-Brucella interactions. J. Biomed. Semant. 6: 37 (2015) - 2014
- [j16]Jie Zheng, Zuoshuang Xiang, Christian J. Stoeckert Jr., Yongqun He
Ontodog: a web-based ontology community view generation tool. Bioinform. 30(9): 1340-1342 (2014) - [j15]Yongqun He
OAE: The Ontology of Adverse Events. J. Biomed. Semant. 5: 29 (2014) - [j14]Sirarat Sarntivijai
CLO: The cell line ontology. J. Biomed. Semant. 5: 37 (2014) - [j13]Rebecca Racz
DNAVaxDB: the first web-based DNA vaccine database and its data analysis. BMC Bioinform. 15(S-4): S2 (2014) - [j12]Yongqun He
Updates on the web-based VIOLIN vaccine database and analysis system. Nucleic Acids Res. 42(Database-Issue): 1124-1132 (2014) - [c9]Zuoshuang Xiang, Yu Lin, Yongqun He:
Ontobat: An Ontology-based Semantic Web Approach for Linked Data Processing and Analysis. ICBO 2014: 93-95 - 2013
- [j11]Zuoshuang Xiang, Yongqun He
Genome-wide prediction of vaccine targets for human herpes simplex viruses using Vaxign reverse vaccinology. BMC Bioinform. 14(S-4): S2 (2013) - [j10]Thomas E. Todd, Omar Tibi, Yu Lin, Samantha Sayers, Denise N. Bronner, Zuoshuang Xiang, Yongqun He
Meta-analysis of variables affecting mouse protection efficacy of whole organism Brucella vaccines and vaccine candidates. BMC Bioinform. 14(S-6): S3 (2013) - [j9]Zuoshuang Xiang, Tingting Qin, Zhaohui S. Qin
A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks. BMC Syst. Biol. 7(S-3): S9 (2013) - [c8]Zuoshuang Xiang, Yongqun He:
HINO: BFO-aligned ontology representation of human molecular interactions and pathways. ICBO 2013: 122 - [i1]Yongqun He, Zuoshuang Xiang:
HINO: a BFO-aligned ontology representing human molecular interactions and pathways. CoRR abs/1311.3355 (2013) - 2012
- [j8]Junguk Hur
Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining. J. Biomed. Semant. 3: 18 (2012) - [c7]Zuoshuang Xiang, Yu Lin, Yongqun He:
Ontorat web server for automatic generation and annotations of new ontology terms. ICBO 2012 - [c6]Jie Zheng, Zuoshuang Xiang, Christian J. Stoeckert Jr., Yongqun He:
Ontodog: A Web-based Ontology Community View Generator. ICBO 2012 - 2011
- [j7]Yu Lin, Zuoshuang Xiang, Yongqun He
Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology. J. Biomed. Semant. 2: 9 (2011) - [j6]Arzucan Özgür, Zuoshuang Xiang, Dragomir R. Radev, Yongqun He:
Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology. J. Biomed. Semant. 2(S-2): S8 (2011) - [j5]Brian Yang
Protegen: a web-based protective antigen database and analysis system. Nucleic Acids Res. 39(Database-Issue): 1073-1078 (2011) - [c5]Yongqun He, Zuoshuang Xiang, Sirarat Sarntivijai, Luca Toldo, Werner Ceusters:
AEO: A Realism-Based Biomedical Ontology for the Representation of Adverse Events. ICBO 2011 - [c4]Yu Lin, Zuoshuang Xiang, Yongqun He:
Towards a Semantic Web Application: Ontology-Driven Ortholog Clustering Analysis. ICBO 2011 - [c3]Sirarat Sarntivijai, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Brian D. Athey, Yongqun He:
Cell Line Ontology: Redesigning the Cell Line Knowledgebase to Aid Integrative Translational Informatics. ICBO 2011 - [c2]Zuoshuang Xiang, Yu Lin, Yongqun He:
OntoFox and its Application in Development of Brucellosis Ontology. ICBO 2011 - [c1]Zuoshuang Xiang, Chris Mungall, Alan Ruttenberg, Yongqun He:
Ontobee: A Linked Data Server and Browser for Ontology Terms. ICBO 2011
2000 – 2009
- 2008
- [j4]Zuoshuang Xiang, Thomas E. Todd, Kim P. Ku, Bethany L. Kovacic, Charles B. Larson, Fang Chen, Andrew P. Hodges, Yuying Tian, Elizabeth A. Olenzek, Boyang Zhao, Lesley A. Colby, Howard G. Rush, Janet R. Gilsdorf, George W. Jourdian, Yongqun He
VIOLIN: vaccine investigation and online information network. Nucleic Acids Res. 36(Database-Issue): 923-928 (2008) - 2007
- [j3]Zuoshuang Xiang, Zhaohui S. Qin
CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering. Bioinform. 23(14): 1843-1845 (2007) - [j2]Zuoshuang Xiang, Rebecca M. Minter, Xiaoming Bi, Peter J. Woolf, Yongqun He
miniTUBA: medical inference by network integration of temporal data using Bayesian analysis. Bioinform. 23(18): 2423-2432 (2007) - 2006
- [j1]Zuoshuang Xiang, Wenjie Zheng, Yongqun He
BBP: Brucella genome annotation with literature mining and curation. BMC Bioinform. 7: 347 (2006)
Coauthor Index
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