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Alexander V. Alekseyenko
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2020 – today
- 2024
- [j13]Nephi A. Walton, Radhakrishnan Nagarajan, Chen Wang
, Murat Sincan, Robert R. Freimuth, David B. Everman, Derek C. Walton, Scott P. McGrath, Dominick J. Lemas, Panayiotis V. Benos
Enabling the clinical application of artificial intelligence in genomics: a perspective of the AMIA Genomics and Translational Bioinformatics Workgroup. J. Am. Medical Informatics Assoc. 31(2): 536-541 (2024) - 2023
- [j12]Bashir Hamidi
Not all phenotypes are created equal: covariates of success in e-phenotype specification. J. Am. Medical Informatics Assoc. 30(2): 213-221 (2023) - [i3]Alexander V. Alekseyenko
Online algorithm for assignment of specimens to pooled or individual testing using risk models provides a practical way to increase testing capacity. F1000Research 12: 85 (2023) - 2022
- [c16]Lauren Cuppy, Tami Crawford, Nikunja Swain, Alexander V. Alekseyenko:
Building Determinants of Health Ontology of Mappable Elements (DHOME). AMIA 2022 - 2021
- [j11]Nicola De Maio
A phylogenetic approach for weighting genetic sequences. BMC Bioinform. 22(1): 285 (2021) - [j10]Alexander V. Alekseyenko
Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank. J. Am. Medical Informatics Assoc. 28(1): 138-143 (2021) - [j9]Stéphane M. Meystre
Natural language processing enabling COVID-19 predictive analytics to support data-driven patient advising and pooled testing. J. Am. Medical Informatics Assoc. 29(1): 12-21 (2021) - [c15]Alexander V. Alekseyenko, Bashir Hamidi, Stéphane M. Meystre:
Colonizing Microbiome as a Determinant of COVID-19 Outcome: A Pilot Study. AMIA 2021 - [c14]Stéphane M. Meystre, Paul M. Heider, Jihad S. Obeid, Alexander V. Alekseyenko, James E. Madory:
Natural Language Processing and COVID-19 Predictive Analytics to Enable and Optimize SARS-CoV-2 Pooled Testing. AMIA 2021 - [i2]Thierry Pécot
A deep learning segmentation strategy that minimizes the amount of manually annotated images. F1000Research 10: 256 (2021) - 2020
- [c13]Alexander V. Alekseyenko:
Informatics Architecture for Phenotyped Microbiome Data Generation from Just-in-Time Clinical Microbiology Specimens from CTSA Network Producers. AMIA 2020 - [c12]Alexander V. Alekseyenko, Leslie A. Lenert:
Informatics Challenges of COVID-19 Crisis: A Comprehensive Response from An Academic Health System. AMIA 2020 - [c11]Neel A. Shimpi, Karmen S. Williams, Alexander V. Alekseyenko:
Actionable Opportunities for Improving Opioid Prescribing through Use of Informatics. AMIA 2020
2010 – 2019
- 2019
- [j8]Yongqun He
OHMI: the ontology of host-microbiome interactions. J. Biomed. Semant. 10(1): 25 (2019) - [c10]Ali Shojaee Bakhtiari, Kristin Wallace, Alexander V. Alekseyenko:
Multivariate Pathway Enrichment Analysis for Interpreting Expression Profiles. AMIA 2019 - [c9]Bashir Hamidi, Leslie A. Lenert, Alexander V. Alekseyenko:
Simulation Study of Just-in-Time Specimen Recruitment from University-Wide e-Phenotypes of Interest. AMIA 2019 - [c8]Neel A. Shimpi, Karmen S. Williams, Alexander V. Alekseyenko:
Actionable opportunities for improving knowledge at intersectionof dental and medical data. AMIA 2019 - 2018
- [j7]Alfonso Landeros
BioSimulator.jl: Stochastic simulation in Julia. Comput. Methods Programs Biomed. 167: 23-35 (2018) - [c7]Bashir Hamidi, Leslie A. Lenert, Jihad S. Obeid, Alexander V. Alekseyenko:
The Hidden Microbiome Pipeline: Providing Access to Clinical Microbiome Specimens, Sequences, and Informatics Resources. AMIA 2018 - [i1]Alfonso Landeros, Timothy Stutz, Kevin L. Keys, Alexander V. Alekseyenko, Janet S. Sinsheimer, Kenneth Lange, Mary E. Sehl:
BioSimulator.jl: Stochastic simulation in Julia. CoRR abs/1811.12499 (2018) - 2017
- [j6]Zheng-Zheng Tang, Guanhua Chen
A general framework for association analysis of microbial communities on a taxonomic tree. Bioinform. 33(9): 1278-1285 (2017) - [c6]Alexander V. Alekseyenko, Lita M. Proctor, Paul Carlson, Scott A. Jackson, Connie Chen:
The Impact of Human Microbiome on Precision Medicine. AMIA 2017 - [c5]Ali Shojaee Bakhtiari, Galina S. Bogatkevich, Alexander V. Alekseyenko:
Local Causal Networks Discover Predictive Cytokine Biomarkers of Scleroderma. AMIA 2017 - 2016
- [j5]Zheng-Zheng Tang, Guanhua Chen
PERMANOVA-S: association test for microbial community composition that accommodates confounders and multiple distances. Bioinform. 32(17): 2618-2625 (2016) - [j4]Alexander V. Alekseyenko
Multivariate Welch t-test on distances. Bioinform. 32(23): 3552-3558 (2016) - [c4]Alexander V. Alekseyenko:
Heteroscedastic Omics Data Analysis: Distance-Based Multivariate Approach. AMIA 2016 - [c3]Alexander V. Alekseyenko, Michael J. Becich, Todd Z. DeSantis, Jack A. Gilbert, Georg K. Gerber:
The Human Microbiome: Informatics Challenges and Opportunities. AMIA 2016 - [c2]Ali Shojaee Bakhtiari, Alexander V. Alekseyenko:
Comprehensive Evaluation of Univariate and Multivariate Distributions for Machine Learning With Microbiome Data. AMIA 2016 - 2011
- [c1]Susan P. Holmes, Alexander V. Alekseyenko, Alden Timme, Tyrrell Nelson, Pankaj Jay Pasricha, Alfred Spormann:
Visualization and Statistical Comparisons of Microbial Communities Using R Packages on Phylochip Data. Pacific Symposium on Biocomputing 2011: 142-153
2000 – 2009
- 2009
- [j3]Mary E. Sehl, Alexander V. Alekseyenko
Accurate Stochastic Simulation via the Step Anticipation τ-Leaping (SAL) Algorithm. J. Comput. Biol. 16(9): 1195-1208 (2009) - 2007
- [j2]Alexander V. Alekseyenko
Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases. Bioinform. 23(11): 1386-1393 (2007) - [j1]Namshin Kim
The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species. Nucleic Acids Res. 35(Database-Issue): 93-98 (2007)
Coauthor Index
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