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Julian Parkhill
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2020 – today
- 2022
- [j16]Yingbo Shen, Rong Zhang, Dongyan Shao, Lu Yang, Jiayue Lu, Congcong Liu, Xueyang Wang, Junyao Jiang, Boxuan Wang, Congming Wu, Julian Parkhill, Yang Wang, Timothy R. Walsh, George F. Gao, Zhangqi Shen:
Genomic Shift in Population Dynamics of mcr-1-positive Escherichia coli in Human Carriage. Genom. Proteom. Bioinform. 20(6): 1168-1179 (2022)
2010 – 2019
- 2016
- [j15]Lars Barquist, Matthew Mayho, Carla A. Cummins, Amy K. Cain, Christine J. Boinett, Andrew J. Page, Gemma C. Langridge, Michael A. Quail, Jacqueline A. Keane, Julian Parkhill:
The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries. Bioinform. 32(7): 1109-1111 (2016) - 2015
- [j14]Andrew J. Page, Carla A. Cummins, Martin Hunt, Vanessa K. Wong, Sandra Reuter, Matthew T. G. Holden, Maria Fookes, Daniel Falush, Jacqueline A. Keane, Julian Parkhill:
Roary: rapid large-scale prokaryote pan genome analysis. Bioinform. 31(22): 3691-3693 (2015) - 2014
- [j13]Andries J. van Tonder, Shilan Mistry, James E. Bray, Dorothea M. C. Hill, Alison J. Cody, Chris L. Farmer, Keith P. Klugman, Anne von Gottberg, Stephen D. Bentley, Julian Parkhill, Keith A. Jolley, Martin C. J. Maiden, Angela B. Brueggemann:
Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model. PLoS Comput. Biol. 10(8) (2014) - 2013
- [j12]Tim Carver, Simon R. Harris, Thomas D. Otto, Matthew Berriman, Julian Parkhill, Jacqueline A. McQuillan:
BamView: visualizing and interpretation of next-generation sequencing read alignments. Briefings Bioinform. 14(2): 203-212 (2013) - 2012
- [j11]Tim Carver, Simon R. Harris, Matthew Berriman, Julian Parkhill, Jacqueline A. McQuillan:
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data. Bioinform. 28(4): 464-469 (2012) - [j10]Francesc Coll, Kim Mallard, Mark D. Preston, Stephen D. Bentley, Julian Parkhill, Ruth McNerney, Nigel J. Martin, Taane G. Clark:
SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences. Bioinform. 28(22): 2991-2993 (2012) - [j9]Flora J. Logan-Klumpler, Nishadi De Silva, Ulrike Böhme, Matthew B. Rogers, Giles Velarde, Jacqueline A. McQuillan, Tim Carver, Martin Aslett, Christian Olsen, Sandhya Subramanian, Isabelle Phan, Carol Farris, Siddhartha Mitra, Gowthaman Ramasamy, Haiming Wang, Adrian Tivey, Andrew Jackson, Robin Houston, Julian Parkhill, Matthew T. G. Holden, Omar S. Harb, Brian P. Brunk, Peter J. Myler, David S. Roos, Mark Carrington, Deborah F. Smith, Christiane Hertz-Fowler, Matthew Berriman:
GeneDB - an annotation database for pathogens. Nucleic Acids Res. 40(Database-Issue): 98-108 (2012) - 2010
- [j8]Tim Carver, Ulrike Böhme, Thomas D. Otto, Julian Parkhill, Matthew Berriman:
BamView: viewing mapped read alignment data in the context of the reference sequence. Bioinform. 26(5): 676-677 (2010)
2000 – 2009
- 2009
- [j7]Tim J. Carver, Nick R. Thomson, Alan J. Bleasby, Matthew Berriman, Julian Parkhill:
DNAPlotter: circular and linear interactive genome visualization. Bioinform. 25(1): 119-120 (2009) - [j6]Kathryn E. Holt, Yik Y. Teo, Heng Li, Satheesh Nair, Gordon Dougan, John Wain, Julian Parkhill:
Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA. Bioinform. 25(16): 2074-2075 (2009) - 2008
- [j5]Tim J. Carver, Matthew Berriman, Adrian Tivey, Chinmay Patel, Ulrike Böhme, Bart Barrell, Julian Parkhill, Marie-Adèle Rajandream:
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinform. 24(23): 2672-2676 (2008) - 2006
- [j4]Georgios S. Vernikos, Julian Parkhill:
Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands. Bioinform. 22(18): 2196-2203 (2006) - 2005
- [j3]Tim J. Carver, Kim Rutherford, Matthew Berriman, Marie-Adèle Rajandream, Bart Barrell, Julian Parkhill:
ACT: the Artemis comparison tool. Bioinform. 21(16): 3422-3423 (2005) - 2004
- [j2]Christiane Hertz-Fowler, Chris S. Peacock, Valerie Wood, Martin Aslett, Arnaud Kerhornou, Paul Mooney, Adrian Tivey, Matthew Berriman, Neil Hall, Kim Rutherford, Julian Parkhill, Alasdair C. Ivens, Marie-Adèle Rajandream, Bart Barrell:
GeneDB: a resource for prokaryotic and eukaryotic organisms. Nucleic Acids Res. 32(Database-Issue): 339-343 (2004) - 2000
- [j1]Kim Rutherford, Julian Parkhill, James Crook, Terry Horsnell, Peter Rice, Marie-Adèle Rajandream, Bart Barrell:
Artemis: sequence visualization and annotation. Bioinform. 16(10): 944-945 (2000)
Coauthor Index
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