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Esa Pitkänen
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2020 – today
- 2022
- [j9]Dovydas Kiciatovas, Qingli Guo, Miika Kailas, Henri Pesonen, Jukka Corander, Samuel Kaski, Esa Pitkänen
, Ville Mustonen
Identification of multiplicatively acting modulatory mutational signatures in cancer. BMC Bioinform. 23(1): 522 (2022) - [i2]Joona Pohjonen, Carolin Stürenberg, Atte Föhr, Esa Pitkänen, Antti Rannikko, Tuomas Mirtti:
Exposing and addressing the fragility of neural networks in digital pathology. CoRR abs/2206.15274 (2022) - 2021
- [j8]Bulat Zagidullin
Comparative analysis of molecular fingerprints in prediction of drug combination effects. Briefings Bioinform. 22(6) (2021) - [i1]Joona Pohjonen, Carolin Stürenberg, Antti Rannikko, Tuomas Mirtti, Esa Pitkänen:
Training robust deep learning models for medical imaging tasks with spectral decoupling. CoRR abs/2103.17171 (2021)
2010 – 2019
- 2018
- [j7]Daniel Valenzuela, Tuukka Norri
Towards pan-genome read alignment to improve variation calling. BMC Genom. 19(S2) (2018) - 2015
- [j6]Rik Eshuis
Service Outsourcing with Process Views. IEEE Trans. Serv. Comput. 8(1): 136-154 (2015) - 2014
- [j5]Esa Pitkänen
Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species. PLoS Comput. Biol. 10(2) (2014) - 2011
- [c8]Esa Pitkänen, Juho Rousu, Mikko Arvas:
Minimum Mutation Algorithm for Gapless Metabolic Network Evolution. BIOINFORMATICS 2011: 28-38 - [c7]Esa Pitkänen, Mikko Arvas, Juho Rousu:
Reconstructing Gapless Ancestral Metabolic Networks. BIOSTEC (Selected Papers) 2011: 126-140 - 2010
- [b1]Esa Pitkänen:
Computational Methods for Reconstruction and Analysis of Genome-Scale Metabolic Networks. University of Helsinki, Finland, 2010 - [c6]Katja Astikainen, Esa Pitkänen, Juho Rousu, Liisa Holm, Sándor Szedmák:
Reaction Kernels - Structured Output Prediction Approaches for Novel Enzyme Function. BIOINFORMATICS 2010: 48-55 - [c5]Katja Astikainen, Liisa Holm
Structured Output Prediction of Novel Enzyme Function with Reaction Kernels. BIOSTEC (Selected Papers) 2010: 367-379
2000 – 2009
- 2009
- [j4]Esa Pitkänen
Inferring branching pathways in genome-scale metabolic networks. BMC Syst. Biol. 3: 103 (2009) - [j3]Paula Jouhten
13C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose. BMC Syst. Biol. 3: 104 (2009) - 2008
- [j2]Esa Pitkänen
ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis. J. Integr. Bioinform. 5(2) (2008) - [c4]Esa Pitkänen, Ari Rantanen, Juho Rousu, Esko Ukkonen:
A Computational Method for Reconstructing Gapless Metabolic Networks. BIRD 2008: 288-302 - 2006
- [j1]Ari Rantanen, Hannu Maaheimo, Esa Pitkänen, Juho Rousu, Esko Ukkonen:
Equivalence of Metabolite Fragments and Flow Analysis of Isotopomer Distributions for Flux Estimation. Trans. Comp. Sys. Biology 6: 198-220 (2006) - [c3]Markus Heinonen, Ari Rantanen, Taneli Mielikäinen, Esa Pitkänen, Juha Kokkonen, Juho Rousu:
Ab Initio Prediction of Molecular Fragments from Tandem Mass Spectrometry Data. German Conference on Bioinformatics 2006: 40-53 - 2005
- [c2]Esa Pitkänen, Ari Rantanen, Juho Rousu, Esko Ukkonen
Finding Feasible Pathways in Metabolic Networks. Panhellenic Conference on Informatics 2005: 123-133 - 2003
- [c1]Juho Rousu, Ari Rantanen, Hannu Maaheimo, Esa Pitkänen
A Method for Estimating Metabolic Fluxes from Incomplete Isotopomer Information. CMSB 2003: 88-103
Coauthor Index
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