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Alberto D. Pascual-Montano
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2010 – 2019
- 2015
- [j26]Edgardo Mejía-Roa
, Daniel Tabas-Madrid, Javier Setoain, Carlos García
NMF-mGPU: non-negative matrix factorization on multi-GPU systems. BMC Bioinform. 16: 43:1-43:12 (2015) - [j25]Javier Setoain, Mònica Franch, Marta Martínez
NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning. Nucleic Acids Res. 43(Webserver-Issue): W193-W199 (2015) - 2014
- [j24]Joao Miguel da Conceiçao Alves-Cruzeiro, Rubén Nogales-Cadenas, Alberto Domingo Pascual-Montano:
CentrosomeDB: a new generation of the centrosomal proteins database for Human and Drosophila melanogaster. Nucleic Acids Res. 42(Database-Issue): 430-436 (2014) - [i1]Carlos Oscar Sánchez Sorzano, Javier Vargas, Alberto Domingo Pascual-Montano:
A survey of dimensionality reduction techniques. CoRR abs/1403.2877 (2014) - 2013
- [j23]Rubén Nogales-Cadenas, Slavica Jonic
3DEM Loupe: analysis of macromolecular dynamics using structures from electron microscopy. Nucleic Acids Res. 41(Webserver-Issue): 363-367 (2013) - 2012
- [j22]Daniel Tabas-Madrid, Rubén Nogales-Cadenas, Alberto D. Pascual-Montano:
GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics. Nucleic Acids Res. 40(Web-Server-Issue): 478-483 (2012) - 2011
- [j21]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J. Biomed. Semant. 2(S-5): S11 (2011) - [j20]Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12: 481 (2011) - [j19]Alberto D. Pascual-Montano:
Gene expression modular analysis: an overview from the data mining perspective. WIREs Data Mining Knowl. Discov. 1(5): 381-396 (2011) - [c13]Christian Borgelt, Xiaoyuan Yang, Rubén Nogales-Cadenas, Pedro Carmona-Saez
Finding closed frequent item sets by intersecting transactions. EDBT 2011: 367-376 - [c12]Edgardo Mejía-Roa
Biclustering and classification analysis in gene expression using Nonnegative Matrix Factorization on multi-GPU systems. ISDA 2011: 882-887 - [c11]Edgardo Mejía-Roa
Parallelism on the Nonnegative Matrix Factorization. PARCO 2011: 421-428 - 2010
- [j18]Mariana L. Neves
Moara: a Java library for extracting and normalizing gene and protein mentions. BMC Bioinform. 11: 157 (2010) - [j17]Ignacio Medina
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Res. 38(Web-Server-Issue): 210-213 (2010) - [j16]Miguel Vázquez
MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures. Nucleic Acids Res. 38(Web-Server-Issue): 228-232 (2010) - [c10]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine 2010
2000 – 2009
- 2009
- [j15]Rubén Nogales-Cadenas, Federico Abascal, Javier Díez-Pérez
CentrosomeDB: a human centrosomal proteins database. Nucleic Acids Res. 37(Database-Issue): 175-180 (2009) - [j14]Miguel Vázquez
SENT: semantic features in text. Nucleic Acids Res. 37(Web-Server-Issue): 153-159 (2009) - [j13]Rubén Nogales-Cadenas, Pedro Carmona-Saez
GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information. Nucleic Acids Res. 37(Web-Server-Issue): 317-322 (2009) - [c9]Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano:
Extraction of biomedical events using case-based reasoning. BioNLP@HLT-NAACL (Shared Task) 2009: 68-76 - 2008
- [j12]Federico Abascal, Pedro Carmona-Saez
ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data. Bioinform. 24(9): 1208-1209 (2008) - [j11]Monica Chagoyen
Assessment of protein set coherence using functional annotations. BMC Bioinform. 9 (2008) - [j10]Edgardo Mejía-Roa
bioNMF: a web-based tool for nonnegative matrix factorization in biology. Nucleic Acids Res. 36(Web-Server-Issue): 523-528 (2008) - [c8]Mariana L. Neves, Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano:
CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem. BioNLP 2008: 108-109 - [c7]Alberto D. Pascual-Montano:
Non-negative matrix factorization in bioinformatics: Towards understanding biological processes. ISCAS 2008: 1332-1335 - [c6]Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano:
Extracting and Normalizing Gene/Protein Mentions with the Flexible and Trainable Moara Java Library. BioLINK@ISMB/ECCB 2008: 71-80 - [c5]Miguel Vázquez
Named Entity Recognition and Normalization: A Domain-Specific Language Approach. IWPACBB 2008: 147-155 - 2006
- [j9]Carlos Oscar Sánchez Sorzano
Optimization problems in electron microscopy of single particles. Ann. Oper. Res. 148(1): 133-165 (2006) - [j8]Monica Chagoyen
Discovering semantic features in the literature: a foundation for building functional associations. BMC Bioinform. 7: 41 (2006) - [j7]Pedro Carmona-Saez
Integrated analysis of gene expression by association rules discovery. BMC Bioinform. 7: 54 (2006) - [j6]Pedro Carmona-Saez
Biclustering of gene expression data by non-smooth non-negative matrix factorization. BMC Bioinform. 7: 78 (2006) - [j5]Monica Chagoyen
A literature-based similarity metric for biological processes. BMC Bioinform. 7: 363 (2006) - [j4]Alberto D. Pascual-Montano, Pedro Carmona-Saez
bioNMF: a versatile tool for non-negative matrix factorization in biology. BMC Bioinform. 7: 366 (2006) - [j3]Alberto D. Pascual-Montano, José María Carazo, Kieko Kochi, Dietrich Lehmann, Roberto D. Pascual-Marqui
Nonsmooth Nonnegative Matrix Factorization (nsNMF). IEEE Trans. Pattern Anal. Mach. Intell. 28(3): 403-415 (2006) - 2005
- [c4]Alberto D. Pascual-Montano, Francisco Tirado
Two-way clustering of gene expression profiles by sparse matrix factorization. CSB Workshops 2005: 103-104 - [c3]Carlos García, Manuel Prieto, Alberto D. Pascual-Montano:
A Speculative Parallel Algorithm for Self-Organizing Maps. PARCO 2005: 615-622 - 2003
- [j2]Jorge García de la Nava, Daniel Franco Santaella, Jesús Cuenca Alba, José María Carazo, Oswaldo Trelles
Engene: the processing and exploratory analysis of gene expression data. Bioinform. 19(5): 657-658 (2003) - 2002
- [c2]Pedro A. de Alarcón, Alberto D. Pascual-Montano, José María Carazo:
Spin Images and Neural Networks for Efficient Content-Based Retrieval in 3D Object Databases. CIVR 2002: 225-234 - [c1]Pedro A. de Alarcón, Alberto D. Pascual-Montano, Amarnath Gupta, José María Carazo:
Modeling Shape and Topology of 3D Images of Biological Specimens. ICPR (1) 2002: 79-82 - 2001
- [j1]Roberto D. Pascual-Marqui, Alberto D. Pascual-Montano, Kieko Kochi, José María Carazo:
Smoothly distributed fuzzy c-means: a new self-organizing map. Pattern Recognit. 34(12): 2395-2402 (2001)
Coauthor Index
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