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Dan Li 0013

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affiliation: Zhejiang University, College of Pharmaceutical Sciences, Hangzhou, China

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Dan Li — disambiguation page
Dan Li 0001 — Tsinghua University, Department of Computer Science and Technology, Beijing, China (and 2 more)
Dan Li 0002 — Northern Arizona University, Flagstaff, AZ, USA (and 1 more)
Dan Li 0003 — University of Science and Technology Beijing, Department of Applied Mathematics, China
Dan Li 0004 — Fudan University, Research Center of Smart Networks and Systems, Shanghai, China
Dan Li 0005 — Hohai University Wentian College, Foundation Department, Maanshan, China
Dan Li 0006 — Tianjin University, School of Computer Science and Technology, China
Dan Li 0007 — National Digital Switching System Engineering and Technology Research Center, Zhengzhou, China
Dan Li 0008 — Shanghai Normal University, Mathematics and Science College, China
Dan Li 0009 — Durham University, Department of Engineering, UK

Dan Li 0010 — Chengdu Technological University, Department of Electrical and Electronics Engineering, China
Dan Li 0011 — Xi'an Jiaotong University, School of Microelectronics, China
Dan Li 0012 — Huazhong University of Science and Technology, School of Computer Science, Wuhan, China
Dan Li 0014 — Nanjing University of Aeronautics and Astronautics, College of Astronautics, China (and 1 more)
Dan Li 0015 — Elsevier, Amsterdam, The Netherlands (and 2 more)
Dan Li 0016 — National University of Singapore, Institute of Data Science, Singapore (and 1 more)
Dan Li 0017 — China Agricultural University, College of Information and Electrical Engineering, Beijing, China
Dan Li 0018 — Nanjing University of Aeronautics and Astronautics, College of Computer Science and Technology, China
Dan Li 0019 — Shandong University of Science and Technology, College of Economics and Management / College of Mathematics and Systems Science, Qingdao, China
Dan Li 0020 — University of California San Diego, Department of Mechanical and Aerospace Engineering, La Jolla, CA, USA
Dan Li 0021 — Hefei University of Technology, School of Civil Engineering, China
Dan Li 0022 — Xi'an University of Technology, School of Computer Science and Engineering, China
Dan Li 0023 — Chalmers University of Technology, Gothenburg, Sweden
Dan Li 0024 — Northeast Forestry University, Department of Computer Science and Technology, Harbin, China
Dan Li 0025 — Anhui University of Technology, School of Electrical Information and Engineering, Ma'anshan, China
Dan Li 0026 — Georgia Institute of Technology, School of Civil and Environmental Engineering, Atlanta, GA, USA
Dan Li 0027 — Tsinghua University, State Key Laboratory of Hydroscience and Engineering, Beijing, China
Dan Li 0028 — Northeastern University, School of Computer Science and Engineering, Shenyang, China
Dan Li 0029 — Guangdong University of Technology, School of Automation, Guangzhou, China
Dan Li 0030 — Georgia Institute of Technology, Atlanta, GA, USA (and 1 more)
Dan Li 0031 — Xinjiang University, College of Mathematics and System Science, Urumqi, China

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2020 – today

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2024
[j25]
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Mingyang Wang, Zhengjian Wu, Jike Wang, Gaoqi Weng, Yu Kang, Peichen Pan, Dan Li, Yafeng Deng, Xiaojun Yao, Zhitong Bing, Chang-Yu Hsieh, Tingjun Hou:
Genetic Algorithm-Based Receptor Ligand: A Genetic Algorithm-Guided Generative Model to Boost the Novelty and Drug-Likeness of Molecules in a Sampling Chemical Space. J. Chem. Inf. Model. 64(4): 1213-1228 (2024)
2023
[j24]
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Xujun Zhang, Chao Shen, Tianyue Wang, Yafeng Deng, Yu Kang, Dan Li, Tingjun Hou, Peichen Pan:
ML-PLIC: a web platform for characterizing protein-ligand interactions and developing machine learning-based scoring functions. Briefings Bioinform. 24(5) (2023)
[j23]
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Gaoqi Weng, Xuanyan Cai, Dong-Sheng Cao, Hongyan Du, Chao Shen, Yafeng Deng, Qiaojun He, Bo Yang, Dan Li, Tingjun Hou:
PROTAC-DB 2.0: an updated database of PROTACs. Nucleic Acids Res. 51(D1): 1367-1372 (2023)
2022
[j22]
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Mingyang Wang, Jike Wang, Gaoqi Weng, Yu Kang, Peichen Pan, Dan Li, Yafeng Deng, Honglin Li, Chang-Yu Hsieh, Tingjun Hou:
ReMODE: a deep learning-based web server for target-specific drug design. J. Cheminformatics 14(1): 84 (2022)
2021
[j21]
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Chao Shen, Gaoqi Weng, Xujun Zhang, Elaine Lai-Han Leung, Xiaojun Yao, Jinping Pang, Xin Chai, Dan Li, Ercheng Wang, Dong-Sheng Cao, Tingjun Hou:
Accuracy or novelty: what can we gain from target-specific machine-learning-based scoring functions in virtual screening? Briefings Bioinform. 22(5) (2021)
[j20]
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Qing Ye, Xin Chai, Dejun Jiang, Liu Yang, Chao Shen, Xujun Zhang, Dan Li, Dong-Sheng Cao, Tingjun Hou:
Identification of active molecules against Mycobacterium tuberculosis through machine learning. Briefings Bioinform. 22(5) (2021)
[j19]
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Hongyan Du, Junbo Gao, Gaoqi Weng, Jun-Jie Ding, Xin Chai, Jinping Pang, Yu Kang, Dan Li, Dong-Sheng Cao, Tingjun Hou:
CovalentInDB: a comprehensive database facilitating the discovery of covalent inhibitors. Nucleic Acids Res. 49(Database-Issue): D1122-D1129 (2021)
[j18]
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Gaoqi Weng, Chao Shen, Dong-Sheng Cao, Junbo Gao, Xiaowu Dong, Qiaojun He, Bo Yang, Dan Li, Jian Wu, Tingjun Hou:
PROTAC-DB: an online database of PROTACs. Nucleic Acids Res. 49(Database-Issue): D1381-D1387 (2021)
2020
[j17]
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Chao Shen, Zhe Wang, Xiaojun Yao, Youyong Li, Tailong Lei, Ercheng Wang, Lei Xu, Feng Zhu, Dan Li, Tingjun Hou:
Comprehensive assessment of nine docking programs on type II kinase inhibitors: prediction accuracy of sampling power, scoring power and screening power. Briefings Bioinform. 21(1): 282-297 (2020)

2010 – 2019

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2019
[j16]
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Zhe Wang, Xuwen Wang, Youyong Li, Tailong Lei, Ercheng Wang, Dan Li, Yu Kang, Feng Zhu, Tingjun Hou:
farPPI: a webserver for accurate prediction of protein-ligand binding structures for small-molecule PPI inhibitors by MM/PB(GB)SA methods. Bioinform. 35(10): 1777-1779 (2019)
[j15]
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Ye Jin, Mojie Duan, Xuwen Wang, Xiaotian Kong, Wenfang Zhou, Huiyong Sun, Hui Liu, Dan Li, Huidong Yu, Youyong Li, Tingjun Hou:
Communication between the Ligand-Binding Pocket and the Activation Function-2 Domain of Androgen Receptor Revealed by Molecular Dynamics Simulations. J. Chem. Inf. Model. 59(2): 842-857 (2019)
[j14]
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Gaoqi Weng, Ercheng Wang, Zhe Wang, Hui Liu, Feng Zhu, Dan Li, Tingjun Hou:
HawkDock: a web server to predict and analyze the protein-protein complex based on computational docking and MM/GBSA. Nucleic Acids Res. 47(Webserver-Issue): W322-W330 (2019)
2018
[j13]
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Wenfang Zhou, Mojie Duan, Weitao Fu, Jinping Pang, Qin Tang, Huiyong Sun, Lei Xu, Shan Chang, Dan Li, Tingjun Hou:
Discovery of Novel Androgen Receptor Ligands by Structure-based Virtual Screening and Bioassays. Genom. Proteom. Bioinform. 16(6): 416-427 (2018)
[j12]
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Jun Shang, Ben Hu, Junmei Wang, Feng Zhu, Yu Kang, Dan Li, Huiyong Sun, De-Xin Kong, Tingjun Hou:
Cheminformatic Insight into the Differences between Terrestrial and Marine Originated Natural Products. J. Chem. Inf. Model. 58(6): 1182-1193 (2018)
[j11]
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Na Liu, Wenfang Zhou, Yue Guo, Junmei Wang, Weitao Fu, Huiyong Sun, Dan Li, Mojie Duan, Tingjun Hou:
Molecular Dynamics Simulations Revealed the Regulation of Ligands to the Interactions between Androgen Receptor and Its Coactivator. J. Chem. Inf. Model. 58(8): 1652-1661 (2018)
2017
[j10]
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Jun Shang, Huiyong Sun, Hui Liu, Fu Chen, Sheng Tian, Peichen Pan, Dan Li, De-Xin Kong, Tingjun Hou:
Comparative analyses of structural features and scaffold diversity for purchasable compound libraries. J. Cheminformatics 9(1): 25:1-25:16 (2017)
[j9]
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Ting Feng, Fu Chen, Yu Kang, Huiyong Sun, Hui Liu, Dan Li, Feng Zhu, Tingjun Hou:
HawkRank: a new scoring function for protein-protein docking based on weighted energy terms. J. Cheminformatics 9(1): 66:1-66:15 (2017)
[j8]
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Huiyong Sun, Youyong Li, Mingyun Shen, Dan Li, Yu Kang, Tingjun Hou:
Characterizing Drug-Target Residence Time with Metadynamics: How To Achieve Dissociation Rate Efficiently without Losing Accuracy against Time-Consuming Approaches. J. Chem. Inf. Model. 57(8): 1895-1906 (2017)
2016
[j7]
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Tailong Lei, Youyong Li, Yunlong Song, Dan Li, Huiyong Sun, Tingjun Hou:
ADMET evaluation in drug discovery: 15. Accurate prediction of rat oral acute toxicity using relevance vector machine and consensus modeling. J. Cheminformatics 8(1): 6:1-6:19 (2016)
2015
[j6]
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Yu Zhang, Lei Xu, Zhiqiang Zhang, Zhiyu Zhang, Longtai Zheng, Dan Li, Youyong Li, Feng Liu, Kunqian Yu, Tingjun Hou, Xuechu Zhen:
Structure-Activity Relationships and Anti-inflammatory Activities of N-Carbamothioylformamide Analogues as MIF Tautomerase Inhibitors. J. Chem. Inf. Model. 55(9): 1994-2004 (2015)
[j5]
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Peichen Pan, Sheng Tian, Huiyong Sun, Xiaotian Kong, Wenfang Zhou, Dan Li, Youyong Li, Tingjun Hou:
Identification and Preliminary SAR Analysis of Novel Type-I Inhibitors of TIE-2 via Structure-Based Virtual Screening and Biological Evaluation in in vitro Models. J. Chem. Inf. Model. 55(12): 2693-2704 (2015)
2014
[j4]
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Sheng Tian, Huiyong Sun, Peichen Pan, Dan Li, Xuechu Zhen, Youyong Li, Tingjun Hou:
Assessing an Ensemble Docking-Based Virtual Screening Strategy for Kinase Targets by Considering Protein Flexibility. J. Chem. Inf. Model. 54(10): 2664-2679 (2014)
2013
[j3]
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Sheng Tian, Youyong Li, Dan Li, Xiaojie Xu, Junmei Wang, Qian Zhang, Tingjun Hou:
Modeling Compound-Target Interaction Network of Traditional Chinese Medicines for Type II Diabetes Mellitus: Insight for Polypharmacology and Drug Design. J. Chem. Inf. Model. 53(7): 1787-1803 (2013)
[j2]
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Huiyong Sun, Youyong Li, Dan Li, Tingjun Hou:
Insight into Crizotinib Resistance Mechanisms Caused by Three Mutations in ALK Tyrosine Kinase using Free Energy Calculation Approaches. J. Chem. Inf. Model. 53(9): 2376-2389 (2013)
[j1]
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Sheng Tian, Huiyong Sun, Youyong Li, Peichen Pan, Dan Li, Tingjun Hou:
Development and Evaluation of an Integrated Virtual Screening Strategy by Combining Molecular Docking and Pharmacophore Searching Based on Multiple Protein Structures. J. Chem. Inf. Model. 53(10): 2743-2756 (2013)

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