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Jinbo Xu
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2020 – today
- 2024
- [j61]Xiaona Xie, Zeqian Liu, Yuanshuai Wang, Haoyue Fu, Mengqi Liu, Yingqin Zhang, Jinbo Xu:
Puppet Dynasty Recognition System Based on MobileNetV2. Entropy 26(8): 645 (2024) - [j60]Jinbo Xu
, Yong Wang
Support-Query Mutual Promotion and Classification Correction Network for Few-Shot Object Detection. IEEE Signal Process. Lett. 31: 201-205 (2024) - [c66]Huimei Liao, Siyuan Leng, Junhai Yang, Jinbo Xu, Junhao Zhang, Jinling Tang:
A Robust and Efficient Risk Assessment Framework for Multi-Step Attacks. ICICT 2024: 309-314 - [c65]Chongshan Liang, Yi Dai, Jun Xia, Jinbo Xu, Jintao Peng, Weixia Xu, Ming Xie, Jie Liu, Zhiquan Lai, Sheng Ma, Qi Zhu:
The Self-adaptive and Topology-aware MPI_Bcast leveraging Collective offload on Tianhe Express Interconnect. IPDPS 2024: 791-801 - [i15]Daiheng Zhang, Yan Zeng, Xinyu Hong, Jinbo Xu:
Leveraging Multimodal Protein Representations to Predict Protein Melting Temperatures. CoRR abs/2412.04526 (2024) - 2023
- [j59]Bo Chen, Ziwei Xie
Improved the heterodimer protein complex prediction with protein language models. Briefings Bioinform. 24(4) (2023) - [j58]Fandi Wu
Improving protein structure prediction using templates and sequence embedding. Bioinform. 39(1) (2023) - [j57]Alessio Del Conte
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. Nucleic Acids Res. 51(W1): 62-69 (2023) - [c64]Wenyi Xu
Research on the Aesthetic Connotation of New Media Ink Painting Art Based on Grounded Theory. HCI (24) 2023: 196-214 - [i14]Fang Wu, Huiling Qin, Siyuan Li, Stan Z. Li, Xianyuan Zhan
InstructBio: A Large-scale Semi-supervised Learning Paradigm for Biochemical Problems. CoRR abs/2304.03906 (2023) - 2022
- [j56]Boqiao Lai
Accurate protein function prediction via graph attention networks with predicted structure information. Briefings Bioinform. 23(1) (2022) - [j55]Ngoc Hieu Tran
A tale of solving two computational challenges in protein science: neoantigen prediction and protein structure prediction. Briefings Bioinform. 23(1) (2022) - [j54]Ziwei Xie
Deep graph learning of inter-protein contacts. Bioinform. 38(4): 947-953 (2022) - [j53]Lupeng Kong
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs. J. Comput. Biol. 29(2): 92-105 (2022) - [j52]Boqiao Lai
Annotating functional effects of non-coding variants in neuropsychiatric cell types by deep transfer learning. PLoS Comput. Biol. 18(5) (2022) - [c63]Jinbo Xu, Yueqing Wei:
Analysis of the Attainable Design Paths of Non-heritage Cultural Tourism Immersion Experience - An Example of the Tujia City Living Room Project in Enshi Prefecture. HCI (48) 2022: 370-377 - [i13]Fang Wu, Tao Yu, Dragomir Radev, Jinbo Xu:
When Geometric Deep Learning Meets Pretrained Protein Language Models. CoRR abs/2212.03447 (2022) - 2021
- [j51]Xiaoyang Jing
Improved protein model quality assessment by integrating sequential and pairwise features using deep learning. Bioinform. 36(22-23): 5361-5367 (2021) - [j50]Fengyuan Hu
ORFLine: a bioinformatic pipeline to prioritize small open reading frames identifies candidate secreted small proteins from lymphocytes. Bioinform. 37(19): 3152-3159 (2021) - [j49]Jin Li, Jinbo Xu
Study of real-valued distance prediction for protein structure prediction with deep learning. Bioinform. 37(19): 3197-3203 (2021) - [j48]Jinbo Xu
Improved protein structure prediction by deep learning irrespective of co-evolution information. Nat. Mach. Intell. 3(7): 601-609 (2021) - [j47]Xiaoyang Jing
Fast and effective protein model refinement using deep graph neural networks. Nat. Comput. Sci. 1(7): 462-469 (2021) - [j46]Fandi Wu
Deep template-based protein structure prediction. PLoS Comput. Biol. 17(5) (2021) - [c62]Fan Ding, Jianzhu Ma, Jinbo Xu, Yexiang Xue:
XOR-CD: Linearly Convergent Constrained Structure Generation. ICML 2021: 2728-2738 - [c61]Fan Ding, Nan Jiang, Jianzhu Ma, Jian Peng, Jinbo Xu, Yexiang Xue:
PALM: Probabilistic area loss Minimization for Protein Sequence Alignment. UAI 2021: 1100-1109 - 2020
- [j45]Sara Sadat Aghamiri
Automated inference of Boolean models from molecular interaction maps using CaSQ. Bioinform. 36(16): 4473-4482 (2020) - [p1]Xiaoyang Jing
A Web-Based Protocol for Interprotein Contact Prediction by Deep Learning. Protein-Protein Interaction Networks 2020: 67-80
2010 – 2019
- 2019
- [j44]Sheng Wang
PredMP: a web server for de novo prediction and visualization of membrane proteins. Bioinform. 35(4): 691-693 (2019) - [c60]Zhen Li, Chongming Ni, Jinbo Xu, Xin Gao
Transmembrane Topology Identification by Fusing Evolutionary and Co-evolutionary Information with Cascaded Bidirectional Transformers. BCB 2019: 136-143 - [c59]Zhen Li, Chongming Ni, Jinbo Xu, Xin Gao, Shuguang Cui, Sheng Wang:
Transmembrane Topology Identification by Fusing Evolutionary and Co-evolutionary Information with Cascaded Bidirectional Transformers. BCB 2019: 547 - [c58]Jinbo Xu:
stance-Based Protein Folding Powered by Deep Learning. RECOMB 2019: 324-325 - 2018
- [j43]Jianwei Zhu, Sheng Wang
Protein threading using residue co-variation and deep learning. Bioinform. 34(13): i263-i273 (2018) - [j42]Somaye Hashemifar, Behnam Neyshabur, Aly A. Khan, Jinbo Xu:
Predicting protein-protein interactions through sequence-based deep learning. Bioinform. 34(17): i802-i810 (2018) - [j41]Yujuan Gao, Sheng Wang
RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning. BMC Bioinform. 19-S(4): 73-84 (2018) - [j40]Hong Zeng, Sheng Wang
ComplexContact: a web server for inter-protein contact prediction using deep learning. Nucleic Acids Res. 46(Webserver-Issue): W432-W437 (2018) - [c57]Tianming Zhou, Sheng Wang, Jinbo Xu:
Deep Learning Reveals Many More Inter-protein Residue-Residue Contacts than Direct Coupling Analysis. RECOMB 2018: 295-296 - 2017
- [j39]Sheng Wang
Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model. PLoS Comput. Biol. 13(1) (2017) - [j38]Zhiyong Wang, Benika Hall, Jinbo Xu, Xinghua Shi:
A Sparse Learning Framework for Joint Effect Analysis of Copy Number Variants. IEEE ACM Trans. Comput. Biol. Bioinform. 14(5): 1013-1027 (2017) - [c56]Jinbo Xu:
Folding Large Proteins by Ultra-Deep Learning. BCB 2017: 642 - [c55]Zhen Li, Sheng Wang, Yizhou Yu, Jinbo Xu:
Folding Membrane Proteins by Deep Transfer Learning. RECOMB 2017: 380-382 - [i12]Zhen Li, Sheng Wang, Yizhou Yu, Jinbo Xu:
Predicting membrane protein contacts from non-membrane proteins by deep transfer learning. CoRR abs/1704.07207 (2017) - [i11]Sheng Wang, Zhen Li, Yizhou Yu, Jinbo Xu:
Folding membrane proteins by deep transfer learning. CoRR abs/1708.08407 (2017) - 2016
- [j37]Somaye Hashemifar, Jianzhu Ma, Hammad Naveed
ModuleAlign: module-based global alignment of protein-protein interaction networks. Bioinform. 32(17): 658-664 (2016) - [j36]Sheng Wang
AUCpreD: proteome-level protein disorder prediction by AUC-maximized deep convolutional neural fields. Bioinform. 32(17): 672-679 (2016) - [j35]Somaye Hashemifar, Qixing Huang, Jinbo Xu:
Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization. J. Comput. Biol. 23(11): 903-911 (2016) - [j34]Dinanath Sulakhe, Bingqing Xie, Andrew Taylor, Mark D'Souza, Sandhya Balasubramanian, Somaye Hashemifar, Steven White, Utpal J. Dave, Gady Agam, Jinbo Xu, Sheng Wang
Lynx: a knowledge base and an analytical workbench for integrative medicine. Nucleic Acids Res. 44(Database-Issue): 882-887 (2016) - [j33]Sheng Wang
CoinFold: a web server for protein contact prediction and contact-assisted protein folding. Nucleic Acids Res. 44(Webserver-Issue): W361-W366 (2016) - [j32]Sheng Wang
RaptorX-Property: a web server for protein structure property prediction. Nucleic Acids Res. 44(Webserver-Issue): W430-W435 (2016) - [c54]Sheng Wang
AUC-Maximized Deep Convolutional Neural Fields for Protein Sequence Labeling. ECML/PKDD (2) 2016: 1-16 - [c53]Somaye Hashemifar, Qixing Huang, Jinbo Xu:
Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization. RECOMB 2016: 267-269 - [i10]Qingming Tang, Lifu Tu, Weiran Wang, Jinbo Xu:
Network Inference by Learned Node-Specific Degree Prior. CoRR abs/1602.02386 (2016) - [i9]Somaye Hashemifar, Qixing Huang, Jinbo Xu:
Joint alignment of multiple protein-protein interaction networks via convex optimization. CoRR abs/1604.03482 (2016) - [i8]Sheng Wang, Siqi Sun, Zhen Li, Renyu Zhang, Jinbo Xu:
Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model. CoRR abs/1609.00680 (2016) - 2015
- [b1]Jinbo Xu, Sheng Wang, Jianzhu Ma:
Protein Homology Detection Through Alignment of Markov Random Fields - Using MRFalign. Springer Briefs in Computer Science, Springer 2015, ISBN 978-3-319-14913-4, pp. 1-48 - [j31]Jianzhu Ma, Sheng Wang
Protein contact prediction by integrating joint evolutionary coupling analysis and supervised learning. Bioinform. 31(21): 3506-3513 (2015) - [j30]Bingqing Xie, Gady Agam, Sandhya Balasubramanian, Jinbo Xu, T. Conrad Gilliam, Natalia Maltsev, Daniela Börnigen:
Disease Gene Prioritization Using Network and Feature. J. Comput. Biol. 22(4): 313-323 (2015) - [j29]Qi Lv
Urban Land Use and Land Cover Classification Using Remotely Sensed SAR Data through Deep Belief Networks. J. Sensors 2015: 538063:1-538063:10 (2015) - [c52]Siqi Sun, Hai Wang, Jinbo Xu:
Inferring Block Structure of Graphical Models in Exponential Families. AISTATS 2015 - [c51]Qingming Tang, Sheng Wang
Bermuda: de novo assembly of transcripts with new insights for handling uneven coverage. BCB 2015: 166-175 - [c50]Somaye Hashemifar, Behnam Neyshabur, Jinbo Xu:
Joint inference of tissue-specific networks with a scale free topology. BIBM 2015: 290-294 - [c49]Siqi Sun, Jianzhu Ma, Sheng Wang
Predicting diverse M-best protein contact maps. BIBM 2015: 1287-1295 - [c48]Qingming Tang, Siqi Sun, Jinbo Xu:
Learning Scale-Free Networks by Dynamic Node Specific Degree Prior. ICML 2015: 2247-2255 - [c47]Qi Lv, Yong Dou, Xin Niu, Jiaqing Xu, Jinbo Xu:
Classification of Tiangong-1 hyperspectral remote sensing image via contextual sparse coding. ICMLC 2015: 128-133 - [c46]Jinbo Xu, Weixia Xu, Zhengbin Pang:
A low-latency fine-grained dynamic shared cache management scheme for chip multi-processor. IPCCC 2015: 1-7 - [c45]Siqi Sun, Mladen Kolar, Jinbo Xu:
Learning structured densities via infinite dimensional exponential families. NIPS 2015: 2287-2295 - [c44]Qingming Tang, Chao Yang, Jian Peng, Jinbo Xu:
Exact Hybrid Covariance Thresholding for Joint Graphical Lasso. ECML/PKDD (2) 2015: 593-607 - [c43]Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu:
Protein Contact Prediction by Integrating Joint Evolutionary Coupling Analysis and Supervised Learning. RECOMB 2015: 218-221 - [c42]Jianzhu Ma, Feng Zhao, Jinbo Xu:
Structure Learning Constrained by Node-Specific Degree Distribution. UAI 2015: 533-541 - [i7]Qingming Tang, Chao Yang, Jian Peng, Jinbo Xu:
Exact Hybrid Covariance Thresholding for Joint Graphical Lasso. CoRR abs/1503.02128 (2015) - [i6]Qingming Tang, Siqi Sun, Chao Yang, Jinbo Xu:
Learning Scale Free Network by Node Specific Degree Prior. CoRR abs/1503.02129 (2015) - [i5]Sheng Wang, Siqi Sun, Jinbo Xu:
AUC-maximized Deep Convolutional Neural Fields for Sequence Labeling. CoRR abs/1511.05265 (2015) - [i4]Sheng Wang, Jian Peng, Jianzhu Ma, Jinbo Xu:
Protein secondary structure prediction using deep convolutional neural fields. CoRR abs/1512.00843 (2015) - 2014
- [j28]Somaye Hashemifar, Jinbo Xu:
HubAlign: an accurate and efficient method for global alignment of protein-protein interaction networks. Bioinform. 30(17): 438-444 (2014) - [j27]Zhiyong Wang, Jinbo Xu, Xinghua Shi:
Finding Alternative Expression Quantitative Trait Loci by Exploring Sparse Model Space. J. Comput. Biol. 21(5): 385-393 (2014) - [j26]Dinanath Sulakhe, Sandhya Balasubramanian, Bingqing Xie, Bo Feng, Andrew Taylor, Sheng Wang
Lynx: a database and knowledge extraction engine for integrative medicine. Nucleic Acids Res. 42(Database-Issue): 1007-1012 (2014) - [j25]Jianzhu Ma, Sheng Wang
MRFalign: Protein Homology Detection through Alignment of Markov Random Fields. PLoS Comput. Biol. 10(3) (2014) - [j24]Yuanwu Lei, Lei Guo, Yong Dou, Sheng Ma, Jinbo Xu:
FPGA Implementation of a Special-Purpose VLIW Structure for Double-Precision Elementary Function. ACM Trans. Reconfigurable Technol. Syst. 7(2): 8:1-8:21 (2014) - [c41]Siqi Sun, Yuancheng Zhu, Jinbo Xu:
Adaptive Variable Clustering in Gaussian Graphical Models. AISTATS 2014: 931-939 - [c40]Zhiyong Wang, Jinbo Xu, Xinghua Shi:
CNVnet: combining sparse learning and biological networks to capture joint effect of copy number variants. BCB 2014: 128-137 - [c39]Jinbo Xu, Weixia Xu, Kefei Wang, Zhengbin Pang:
Low-latency last-level cache structure based on grouped cores in Chip Multi-Processor. IPCCC 2014: 1-2 - [c38]Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu:
MRFalign: Protein Homology Detection through Alignment of Markov Random Fields. RECOMB 2014: 173-174 - [i3]Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu:
MRFalign: Protein Homology Detection through Alignment of Markov Random Fields. CoRR abs/1401.2668 (2014) - 2013
- [j23]Jianzhu Ma, Sheng Wang
Protein threading using context-specific alignment potential. Bioinform. 29(13): 257-265 (2013) - [j22]Zhiyong Wang, Jinbo Xu:
Predicting protein contact map using evolutionary and physical constraints by integer programming. Bioinform. 29(13): 266-273 (2013) - [j21]Rongchun Li, Yong Dou, Jie Zhou, Baofeng Li, Jinbo Xu:
From WiFi to WiMAX: Efficient GPU-based Parameterized Transceiver across Different OFDM Protocols. KSII Trans. Internet Inf. Syst. 7(8): 1911-1932 (2013) - [j20]Yuanwu Lei, Yong Dou, Lei Guo, Jinbo Xu, Jie Zhou, Yazhuo Dong, Hongjian Li:
VLIW coprocessor for IEEE-754 quadruple-precision elementary functions. ACM Trans. Archit. Code Optim. 10(3): 12:1-12:22 (2013) - [c37]Jianzhu Ma, Jian Peng, Sheng Wang, Jinbo Xu:
Estimating the Partition Function of Graphical Models Using Langevin Importance Sampling. AISTATS 2013: 433-441 - [c36]Dan Zou, Yong Dou, Qiang Wang
Direction-Optimizing Breadth-First Search on CPU-GPU Heterogeneous Platforms. HPCC/EUC 2013: 1064-1069 - [c35]Pingjing Lu, Bao Li, Zhengbin Pang, Ying Zhang, Shaogang Wang, Jinbo Xu, Yan Liu:
An Effective Framework of Program Optimization for High Performance Computing. NCCET 2013: 153-162 - [c34]Caixia Sun, Yongwen Wang, Jinbo Xu:
Achieving Predictable Performance in SMT Processors by Instruction Fetch Policy. NCCET 2013: 186-197 - [i2]Zhiyong Wang, Jinbo Xu:
Predicting protein contact map using evolutionary and physical constraints by integer programming (extended version). CoRR abs/1308.1975 (2013) - [i1]Jianzhu Ma, Sheng Wang, Jinbo Xu:
Protein contact prediction by joint evolutionary coupling analysis across multiple families. CoRR abs/1312.2988 (2013) - 2012
- [j19]Jianzhu Ma, Jian Peng, Sheng Wang
A conditional neural fields model for protein threading. Bioinform. 28(12): 59-66 (2012) - [c33]Xiaohui Chen, Xinghua Shi, Xing Xu, Zhiyong Wang, Ryan Mills, Charles Lee, Jinbo Xu:
A Two-Graph Guided Multi-task Lasso Approach for eQTL Mapping. AISTATS 2012: 208-217 - [c32]Jian Peng, Tamir Hazan, Nathan Srebro, Jinbo Xu:
Approximate Inference by Intersecting Semidefinite Bound and Local Polytope. AISTATS 2012: 868-876 - 2011
- [j18]Zhiyong Wang, Jinbo Xu:
A conditional random fields method for RNA sequence-structure relationship modeling and conformation sampling. Bioinform. 27(13): 102-110 (2011) - [j17]Sheng Wang
Alignment of distantly related protein structures: algorithm, bound and implications to homology modeling. Bioinform. 27(18): 2537-2545 (2011) - [j16]Shuai Cheng Li
Finding Nearly Optimal GDT Scores. J. Comput. Biol. 18(5): 693-704 (2011) - [c31]Weixia Xu, Jinbo Xu, Zhengbin Pang:
A Parallel Processing Scheme for Large-Size Sliding-Window Applications. HPCC 2011: 35-39 - 2010
- [j15]Jian Peng, Jinbo Xu:
Low-homology protein threading. Bioinform. 26(12): 294-300 (2010) - [j14]Feng Zhao, Jian Peng, Jinbo Xu:
Fragment-free approach to protein folding using conditional neural fields. Bioinform. 26(12): 310-317 (2010) - [j13]Feng Zhao, Jian Peng, Joe DeBartolo, Karl F. Freed, Tobin R. Sosnick, Jinbo Xu:
A Probabilistic and Continuous Model of Protein Conformational Space for Template-Free Modeling. J. Comput. Biol. 17(6): 783-798 (2010) - [j12]Rohit Singh
Struct2Net: a web service to predict protein-protein interactions using a structure-based approach. Nucleic Acids Res. 38(Web-Server-Issue): 508-515 (2010) - [c30]Zhiyong Wang, Feng Zhao, Jian Peng, Jinbo Xu:
Protein 8-class secondary structure prediction using Conditional Neural Fields. BIBM 2010: 109-114
2000 – 2009
- 2009
- [j11]Jinbo Xu, Yong Dou, Zhengbin Pang:
A Reconfigurable Architecture for Rotation Invariant Multi-View Face Detection Based on a Novel Two-Stage Boosting Method. EURASIP J. Adv. Signal Process. 2009 (2009) - [j10]Xin Gao
Predicting Local Quality of a Sequence-Structure Alignment. J. Bioinform. Comput. Biol. 7(5): 789-810 (2009) - [j9]Dongbo Bu, Ming Li, Shuai Cheng Li
Finding compact structural motifs. Theor. Comput. Sci. 410(30-32): 2834-2839 (2009) - [c29]Jinbo Xu, Yong Dou, Yuxing Tang, Xiaodong Wang:
Implementation of Rotation Invariant Multi-View Face Detection on FPGA. APPT 2009: 82-94 - [c28]Yong Dou, Jie Zhou, Xiaoyang Chen, Yuanwu Lei, Jinbo Xu:
FPGA accelerating three QR decomposition algorithms in the unified pipelined framework. FPL 2009: 410-416 - [c27]Jian Peng, Liefeng Bo, Jinbo Xu:
Conditional Neural Fields. NIPS 2009: 1419-1427 - [c26]Jian Peng, Jinbo Xu:
Boosting Protein Threading Accuracy. RECOMB 2009: 31-45 - [c25]Feng Zhao, Jian Peng, Joe DeBartolo, Karl F. Freed, Tobin R. Sosnick, Jinbo Xu:
A Probabilistic Graphical Model for Ab Initio Folding. RECOMB 2009: 59-73 - 2008
- [j8]Rohit Singh
Global alignment of multiple protein interaction networks with application to functional orthology detection. Proc. Natl. Acad. Sci. USA 105(35): 12763-12768 (2008) - [c24]Jinbo Xu, Yong Dou, Jie Zhou:
Multi-access memory architecture for image applications with multiple interested regions. APCCAS 2008: 1576-1579 - [c23]Fei Xia, Yong Dou, Jinbo Xu:
Hardware BLAST Algorithms with Multi-seeds Detection and Parallel Extension. ARC 2008: 39-50 - [c22]Shuai Cheng Li
Finding Largest Well-Predicted Subset of Protein Structure Models. CPM 2008: 44-55 - [c21]Jie Zhou, Yong Dou, Yuanwu Lei, Jinbo Xu, Yazhuo Dong:
Double Precision Hybrid-Mode Floating-Point FPGA CORDIC Co-processor. HPCC 2008: 182-189 - [c20]Shuai Cheng Li
Designing succinct structural alphabets. ISMB 2008: 182-189 - [c19]Jinbo Xu, Yong Dou, Jie Zhou:
Rectangularly Multi-Module Memory System with Table-Based Dynamic Addressing Scheme. NAS 2008: 334-341 - [c18]Rohit Singh, Jinbo Xu, Bonnie Berger:
Global Alignment of Multiple Protein Interaction Networks. Pacific Symposium on Biocomputing 2008: 303-314 - [c17]Jing Zhang, Xin Gao
Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information. RECOMB 2008: 285-299 - [c16]Bonnie Berger, Rohit Singh, Jinbo Xu:
Graph algorithms for biological systems analysis. SODA 2008: 142-151 - 2007
- [j7]Jinbo Xu, Feng Jiao, Bonnie Berger:
A Parameterized Algorithm for Protein Structure Alignment. J. Comput. Biol. 14(5): 564-577 (2007) - [c15]Yong Dou, Jinbo Xu:
FPGA-Accelerated Active Shape Model for Real-Time People Tracking. Asia-Pacific Computer Systems Architecture Conference 2007: 268-279 - [c14]Jinbo Xu:
Solving the contact map overlap problem via tree decomposition and a DEE-like pruning strategy. CDC 2007: 4531-4538 - [c13]Jianbo Qian, Shuai Cheng Li
Finding Compact Structural Motifs. CPM 2007: 142-149 - [c12]Jinbo Xu, Yong Dou, Junfeng Li, Xingming Zhou, Qiang Dou:
FPGA Accelerating Algorithms of Active Shape Model in People Tracking Applications. DSD 2007: 432-435 - [c11]Rohit Singh
Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology. RECOMB 2007: 16-31 - 2006
- [j6]Jinbo Xu, Bonnie Berger
Fast and accurate algorithms for protein side-chain packing. J. ACM 53(4): 533-557 (2006) - [j5]Jinbo Xu, Daniel G. Brown, Ming Li, Bin Ma:
Optimizing Multiple Spaced Seeds for Homology Search. J. Comput. Biol. 13(7): 1355-1368 (2006) - [c10]Jinbo Xu, Yong Dou:
Robust and real-time automatic target recognition using partial hausdorff distance measure on reconfigurable hardware. FPT 2006: 25-32 - [c9]Rohit Singh, Jinbo Xu, Bonnie Berger:
Struct2Net: Integrating Structure into Protein-Protein Interaction Prediction. Pacific Symposium on Biocomputing 2006: 403-414 - [c8]Jinbo Xu, Feng Jiao, Bonnie Berger:
A Parameterized Algorithm for Protein Structure Alignment. RECOMB 2006: 488-499 - 2005
- [j4]Jinbo Xu:
Fold Recognition by Predicted Alignment Accuracy. IEEE ACM Trans. Comput. Biol. Bioinform. 2(2): 157-165 (2005) - [c7]Jinbo Xu, Libo Yu, Ming Li:
Consensus fold recognition by predicted model quality. APBC 2005: 73-83 - [c6]Jinbo Xu, Feng Jiao, Bonnie Berger:
A Tree-Decomposition Approach to Protein Structure Prediction. CSB 2005: 247-256 - [c5]Thomas Tang, Jinbo Xu, Ming Li:
Discovering Sequence-Structure Motifs from Protein Segments and Two Applications. Pacific Symposium on Biocomputing 2005 - [c4]Jinbo Xu:
Rapid Protein Side-Chain Packing via Tree Decomposition. RECOMB 2005: 423-439 - 2004
- [j3]Jinbo Xu, Ming Li, Ying Xu:
Protein Threading by Linear Programming: Theoretical Analysis and Computational Results. J. Comb. Optim. 8(4): 403-418 (2004) - [c3]Jinbo Xu, Daniel G. Brown, Ming Li, Bin Ma:
Optimizing Multiple Spaced Seeds for Homology Search. CPM 2004: 47-58 - 2003
- [j2]Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu:
Raptor: Optimal Protein Threading by Linear Programming. J. Bioinform. Comput. Biol. 1(1): 95-118 (2003) - [j1]Zhi-Zhong Chen, Tao Jiang
Approximation algorithms for NMR spectral peak assignment. Theor. Comput. Sci. 299(1-3): 211-229 (2003) - [c2]Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu:
Protein Threading by Linear Programming. Pacific Symposium on Biocomputing 2003: 264-275 - [c1]Jinbo Xu:
Speedup LP Approach to Protein Threading via Graph Reduction. WABI 2003: 374-388
Coauthor Index
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