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Gabriel Girard

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2020 – today

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2024
[c13]
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Remy Gardier, Arnaud Savoy, Juan Luis Villarreal-Haro, Gabriel Girard, Erick Jorge Canales-Rodríguez, Elda Fischi Gomez, Andreea Hertanu, Ileana O. Jelescu, Jonathan Rafael-Patino, Jean-Philippe Thiran:
Comparing Steam and PGSE Diffusion MRI Signal of RAT Lymph Nodes Using In-Silico Simulations. ISBI 2024: 1-5
2023
[j21]
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Juan Luis Villarreal-Haro, Remy Gardier, Erick Jorge Canales-Rodríguez, Elda Fischi Gomez, Gabriel Girard, Jean-Philippe Thiran, Jonathan Rafael-Patino:
CACTUS: a computational framework for generating realistic white matter microstructure substrates. Frontiers Neuroinformatics 17 (2023)
[j20]
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Gabriel Girard, Jonathan Rafael-Patino, Raphaël Truffet, Dogu Baran Aydogan, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Sara Bosticardo, Ilaria Gabusi, Mario Ocampo-Pineda, Matteo Battocchio, Zuzana Piskorova, Pietro Bontempi, Simona Schiavi, Alessandro Daducci, Aleksandra Stafiej, Dominika Ciupek, Fabian Bogusz, Tomasz Pieciak, Matteo Frigo, Sara Sedlar, Samuel Deslauriers-Gauthier, Ivana Kojcic, Mauro Zucchelli, Hiba Laghrissi, Yang Ji, Rachid Deriche, Kurt G. Schilling, Bennett A. Landman, Alberto Cacciola, Gianpaolo Antonio Basile, Salvatore Bertino, Nancy Newlin, Praitayini Kanakaraj, Francois Rheault, Patryk Filipiak, Timothy M. Shepherd, Ying-Chia Lin, Dimitris G. Placantonakis, Fernando E. Boada, Steven H. Baete, Erick Hernandez-Gutierrez, Alonso Ramirez-Manzanares, Ricardo Coronado-Leija, Pablo Stack-Sánchez, Luis Concha, Maxime Descoteaux, Sina Mansour L, Caio Seguin, Andrew Zalesky, Kenji Marshall, Erick Jorge Canales-Rodríguez, Ye Wu, Sahar Ahmad, Pew-Thian Yap, Antoine Théberge, Florence Gagnon, Frédéric Massi, Elda Fischi Gomez, Remy Gardier, Juan Luis Villarreal-Haro, Marco Pizzolato, Emmanuel Caruyer, Jean-Philippe Thiran:
Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge. NeuroImage 277: 120231 (2023)
[c12]
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Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Sharib Ali, Vincent Andrearczyk, Marc Aubreville, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Veronika Cheplygina, Marie Daum, Marleen de Bruijne, Adrien Depeursinge, Reuben Dorent, Jan Egger, David G. Ellis, Sandy Engelhardt, Melanie Ganz, Noha M. Ghatwary, Gabriel Girard, Patrick Godau, Anubha Gupta, Lasse Hansen, Kanako Harada, Mattias P. Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Pierre Jannin, A. Emre Kavur, Oldrich Kodym, Michal Kozubek, Jianning Li, Hongwei Bran Li, Jun Ma, Carlos Martín-Isla, Bjoern H. Menze, J. Alison Noble, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Tim Rädsch, Jonathan Rafael-Patino, Vivek Singh Bawa, Stefanie Speidel, Carole H. Sudre, Kimberlin M. H. van Wijnen, Martin Wagner, D. Wei, Amine Yamlahi, Moi Hoon Yap, C. Yuan, Maximilian Zenk, A. Zia, David Zimmerer, Dogu Baran Aydogan, Binod Bhattarai, Louise Bloch, Raphael Brüngel, J. Cho, C. Choi, Q. Dou, Ivan Ezhov, Christoph M. Friedrich, C. Fuller, Rebati Raman Gaire, Adrian Galdran, Álvaro García-Faura, Maria Grammatikopoulou, S. Hong, Mostafa Jahanifar, I. Jang, Abdolrahim Kadkhodamohammadi, I. Kang, Florian Kofler, S. Kondo, Hugo Jaco Kuijf, M. Li, M. Luu, Tomaz Martincic, Pedro Morais, Mohamed A. Naser, Bruno Oliveira, David Owen, S. Pang, J. Park, S. Park, Szymon Plotka, Élodie Puybareau, Nasir M. Rajpoot, K. Ryu, Numan Saeed, Adam Shephard, Pengcheng Shi, Dejan Stepec, Ronast Subedi, Guillaume Tochon, Helena R. Torres, Hélène Urien, João L. Vilaça, Kareem A. Wahid, H. Wang, J. Wang, L. Wang, X. Wang, Benedikt Wiestler, Marek Wodzinski, F. Xia, J. Xie, Z. Xiong, Sen Yang, Y. Yang, Z. Zhao, Klaus H. Maier-Hein, Paul F. Jäger, Annette Kopp-Schneider, Lena Maier-Hein:
Why is the Winner the Best? CVPR 2023: 19955-19966
[i4]
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  - journals/corr/abs-2303-17719
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Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Sharib Ali, Vincent Andrearczyk, Marc Aubreville, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Veronika Cheplygina, Marie Daum, Marleen de Bruijne, Adrien Depeursinge, Reuben Dorent, Jan Egger, David G. Ellis, Sandy Engelhardt, Melanie Ganz, Noha M. Ghatwary, Gabriel Girard, Patrick Godau, Anubha Gupta, Lasse Hansen, Kanako Harada, Mattias P. Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Pierre Jannin, Ali Emre Kavur, Oldrich Kodym, Michal Kozubek, Jianning Li, Hongwei Bran Li, Jun Ma, Carlos Martín-Isla, Bjoern H. Menze, J. Alison Noble, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Tim Rädsch, et al.:
Why is the winner the best? CoRR abs/2303.17719 (2023)
[i3]
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  - journals/corr/abs-2305-16109
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Juan Luis Villarreal-Haro, Remy Gardier, Erick Jorge Canales-Rodríguez, Elda Fischi Gomez, Gabriel Girard, Jean-Philippe Thiran, Jonathan Rafael-Patino:
CACTUS: A Computational Framework for Generating Realistic White Matter Microstructure Substrates. CoRR abs/2305.16109 (2023)
2022
[j19]
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  - journals/neuroimage/MaffeiGSAAZWMHS22
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Chiara Maffei, Gabriel Girard, Kurt G. Schilling, Dogu Baran Aydogan, Nagesh Adluru, Andrey Zhylka, Ye Wu, Matteo Mancini, Andac Hamamci, Alessia Sarica, Achille Teillac, Steven H. Baete, Davood Karimi, Fang-Cheng Yeh, Mert E. Yildiz, Ali Gholipour, Yann Bihan-Poudec, Bassem Hiba, Andrea Quattrone, Aldo Quattrone, Tommy Boshkovski, Nikola Stikov, Pew-Thian Yap, Alberto De Luca, Josien P. W. Pluim, Alexander Leemans, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Bennett A. Landman, Erick Jorge Canales-Rodríguez, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Gaëtan Rensonnet, Simona Schiavi, Alessandro Daducci, Marco Pizzolato, Elda Fischi Gomez, Jean-Philippe Thiran, George Dai, Giorgia Grisot, Nikola Lazovski, Santi Puch, Marc Ramos, Paulo Rodrigues, Vesna Prckovska, Robert Jones, Julia Lehman, Suzanne N. Haber, Anastasia Yendiki:
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. NeuroImage 257: 119327 (2022)
[j18]
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  - journals/neuroimage/KochGBCBPMWPCGS22
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Philipp J. Koch, Gabriel Girard, Julia Brügger, Andéol Cadic-Melchior, Elena Beanato, Chang-Hyun Park, Takuya Morishita, Maximilian Jonas Wessel, Marco Pizzolato, Erick Jorge Canales-Rodríguez, Elda Fischi Gomez, Simona Schiavi, Alessandro Daducci, Gian Franco Piredda, Tom Hilbert, Tobias Kober, Jean-Philippe Thiran, Friedhelm C. Hummel:
Evaluating reproducibility and subject-specificity of microstructure-informed connectivity. NeuroImage 258: 119356 (2022)
[c11]
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Hamza Kebiri, Gabriel Girard, Yasser Alemán-Gómez, Thomas Yu, András Jakab, Erick Jorge Canales-Rodríguez, Meritxell Bach Cuadra:
Slice Estimation in Diffusion MRI of Neonatal and Fetal Brains in Image and Spherical Harmonics Domains Using Autoencoders. CDMRI@MICCAI 2022: 3-13
[i2]
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  - journals/corr/abs-2212-08568
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Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Patrick Godau, Veronika Cheplygina, Michal Kozubek, Sharib Ali, Anubha Gupta, Jan Kybic, J. Alison Noble, Carlos Ortiz-de-Solórzano, Samiksha Pachade, Caroline Petitjean, Daniel Sage, Donglai Wei, Elizabeth Wilden, Deepak Alapatt, Vincent Andrearczyk, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Vivek Singh Bawa, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Jinwook Choi, Olivier Commowick, Marie Daum, Adrien Depeursinge, Reuben Dorent, Jan Egger, Hannah Eichhorn, Sandy Engelhardt, Melanie Ganz, Gabriel Girard, Lasse Hansen, Mattias P. Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Hyunjeong Kim, Bennett A. Landman, Hongwei Bran Li, Jianning Li, Jun Ma, Anne L. Martel, et al.:
Biomedical image analysis competitions: The state of current participation practice. CoRR abs/2212.08568 (2022)
2021
[j17]
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  - journals/brain/Ocampo-PinedaSR21
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Mario Ocampo-Pineda, Simona Schiavi, François Rheault, Gabriel Girard, Laurent Petit, Maxime Descoteaux, Alessandro Daducci:
Hierarchical Microstructure Informed Tractography. Brain Connect. 11(2): 75-88 (2021)
[j16]
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Etienne St-Onge, Noor Al-Sharif, Gabriel Girard, Guillaume Theaud, Maxime Descoteaux:
Cortical Surfaces Integration with Tractography for Structural Connectivity Analysis. Brain Connect. 11(7): 505-517 (2021)
[j15]
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Kurt G. Schilling, François Rheault, Laurent Petit, Colin B. Hansen, Vishwesh Nath, Fang-Cheng Yeh, Gabriel Girard, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Elda Fischi Gomez, Marco Pizzolato, Mario Ocampo-Pineda, Simona Schiavi, Erick Jorge Canales-Rodríguez, Alessandro Daducci, Cristina Granziera, Giorgio M. Innocenti, Jean-Philippe Thiran, Laura Mancini, Stephen J. Wastling, Sirio Cocozza, Maria Petracca, Giuseppe Pontillo, Matteo Mancini, Sjoerd B. Vos, Vejay N. Vakharia, John S. Duncan, Helena Melero, Lidia Manzanedo, Emilio Sanz-Morales, Ángel Peña-Melián, Fernando Calamante, Arnaud Attye, Ryan P. Cabeen, Laura Korobova, Arthur W. Toga, Anupa Ambili Vijayakumari, Drew Parker, Ragini Verma, Ahmed M. Radwan, Stefan Sunaert, Louise Emsell, Alberto De Luca, Alexander Leemans, Claude J. Bajada, Hamied A. Haroon, Hojjatollah Azadbakht, Maxime Chamberland, Sila Genc, Chantal M. W. Tax, Ping Hong Yeh, Rujirutana Srikanchana, Colin D. Mcknight, Joseph Yuan-Mou Yang, Jian Chen, Claire E. Kelly, Chun-Hung Yeh, Jérôme Cochereau, Jerome J. Maller, Thomas Welton, Fabien Almairac, Kiran K. Seunarine, Chris A. Clark, Fan Zhang, Nikos Makris, Alexandra J. Golby, Yogesh Rathi, Lauren J. O'Donnell, Yihao Xia, Dogu Baran Aydogan, Yonggang Shi, Francisco Guerreiro Fernandes, Mathijs Raemaekers, Shaun Warrington, Stijn Michielse, Alonso Ramirez-Manzanares, Luis Concha, Ramón Aranda, Mariano Rivera Meraz, Garikoitz Lerma-Usabiaga, Lucas Roitman, Lucius S. Fekonja, Navona Calarco, Michael Joseph, Hajer Nakua, Aristotle N. Voineskos, Philippe Karan, Gabrielle Grenier, Jon Haitz Legarreta, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Andrew L. Alexander, Koji Kamagata, Yuya Saito, Wataru Uchida, Christina Andica, Masahiro Abe, Roza G. Bayrak, Claudia A. M. Gandini Wheeler-Kingshott, Egidio D'Angelo, Fulvia Palesi, Giovanni Savini, Nicolò Rolandi, Pamela Guevara, Josselin Houenou, Narciso López-López, Jean-François Mangin, Cyril Poupon, Claudio Román, Andrea Vázquez, Chiara Maffei, Mavilde Arantes, José Paulo Andrade, Susana Maria Silva, Vince D. Calhoun, Eduardo Caverzasi, Simone Sacco, Michael Lauricella, Franco Pestilli, Daniel Bullock, Yang Zhan, Edith Brignoni-Pérez, Catherine Lebel, Jess E Reynolds, Igor Nestrasil, René Labounek, Christophe Lenglet, Amy Paulson, Stefania Aulicka, Sarah R. Heilbronner, Katja Heuer, Bramsh Qamar Chandio, Javier Guaje, Wei Tang, Eleftherios Garyfallidis, Rajikha Raja, Adam W. Anderson, Bennett A. Landman, Maxime Descoteaux:
Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset? NeuroImage 243: 118502 (2021)
[c10]
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Hamza Kebiri, Hélène Lajous, Yasser Alemán-Gómez, Gabriel Girard, Erick Jorge Canales-Rodríguez, Sébastien Tourbier, Marco Pizzolato, Jean-Baptiste Ledoux, Eleonora Fornari, András Jakab, Meritxell Bach Cuadra:
Quantitative Evaluation of Enhanced Multi-plane Clinical Fetal Diffusion MRI with a Crossing-Fiber Phantom. CDMRI@MICCAI 2021: 12-22
[c9]
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  - conf/miccai/Rafael-PatinoGT21
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Jonathan Rafael-Patino, Gabriel Girard, Raphaël Truffet, Marco Pizzolato, Jean-Philippe Thiran, Emmanuel Caruyer:
The Microstructural Features of the Diffusion-Simulated Connectivity (DiSCo) Dataset. CDMRI@MICCAI 2021: 159-170
2020
[j14]
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  - journals/fini/Rafael-PatinoRR20
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Jonathan Rafael-Patino, David Romascano, Alonso Ramirez-Manzanares, Erick Jorge Canales-Rodríguez, Gabriel Girard, Jean-Philippe Thiran:
Robust Monte-Carlo Simulations in Diffusion-MRI: Effect of the Substrate Complexity and Parameter Choice on the Reproducibility of Results. Frontiers Neuroinformatics 14: 8 (2020)
[j13]
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  - journals/neuroimage/GirardCBSAEKDDT20
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Gabriel Girard, Roberto Caminiti, Alexandra Battaglia-Mayer, Etienne St-Onge, Karen Sandø Ambrosen, Simon F. Eskildsen, Kristine Krug, Tim B. Dyrby, Maxime Descoteaux, Jean-Philippe Thiran, Giorgio M. Innocenti:
On the cortical connectivity in the macaque brain: A comparison of diffusion tractography and histological tracing data. NeuroImage 221: 117201 (2020)
[c8]
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  - conf/miccai/TruffetRGPBTC20
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Raphaël Truffet, Jonathan Rafael-Patino, Gabriel Girard, Marco Pizzolato, Christian Barillot, Jean-Philippe Thiran, Emmanuel Caruyer:
An Evolutionary Framework for Microstructure-Sensitive Generalized Diffusion Gradient Waveforms. MICCAI (2) 2020: 94-103

2010 – 2019

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2019
[j12]
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  - journals/neuroimage/Canales-Rodriguez19
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Erick Jorge Canales-Rodríguez, Jon Haitz Legarreta, Marco Pizzolato, Gaëtan Rensonnet, Gabriel Girard, Jonathan Rafael-Patino, Muhamed Barakovic, David Romascano, Yasser Alemán-Gómez, Joaquim Radua, Edith Pomarol-Clotet, Raymond Salvador, Jean-Philippe Thiran, Alessandro Daducci:
Sparse wars: A survey and comparative study of spherical deconvolution algorithms for diffusion MRI. NeuroImage 184: 140-160 (2019)
[j11]
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Gaëtan Rensonnet, Benoît Scherrer, Gabriel Girard, Aleksandar Jankovski, Simon K. Warfield, Benoît Macq, Jean-Philippe Thiran, Maxime Taquet:
Towards microstructure fingerprinting: Estimation of tissue properties from a dictionary of Monte Carlo diffusion MRI simulations. NeuroImage 184: 964-980 (2019)
[j10]
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  - journals/neuroimage/SchillingNHPBGN19
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Kurt G. Schilling, Vishwesh Nath, Colin B. Hansen, Prasanna Parvathaneni, Justin A. Blaber, Yurui Gao, Peter Neher, Dogu Baran Aydogan, Yonggang Shi, Mario Ocampo-Pineda, Simona Schiavi, Alessandro Daducci, Gabriel Girard, Muhamed Barakovic, Jonathan Rafael-Patino, David Romascano, Gaëtan Rensonnet, Marco Pizzolato, Bennett A. Landman:
Limits to anatomical accuracy of diffusion tractography using modern approaches. NeuroImage 185: 1-11 (2019)
[c7]
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  - conf/icip/Rafael-PatinoBG19
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Jonathan Rafael-Patino, Muhamed Barakovic, Gabriel Girard, Alessandro Daducci, Jean-Philippe Thiran:
Learning Global Brain Microstructure Maps Using Trainable Sparse Encoders. ICIP 2019: 2926-2930
[c6]
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Thomas Yu, Marco Pizzolato, Gabriel Girard, Jonathan Rafael-Patino, Erick Jorge Canales-Rodríguez, Jean-Philippe Thiran:
Robust Biophysical Parameter Estimation with a Neural Network Enhanced Hamiltonian Markov Chain Monte Carlo Sampler. IPMI 2019: 818-829
2018
[j9]
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Dalila Cherifi, Messaoud Boudjada, Abdelatif Morsli, Gabriel Girard, Rachid Deriche:
Combining Improved Euler and Runge-Kutta 4th order for Tractography in Diffusion-Weighted MRI. Biomed. Signal Process. Control. 41: 90-99 (2018)
[j8]
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Etienne St-Onge, Alessandro Daducci, Gabriel Girard, Maxime Descoteaux:
Surface-enhanced tractography (SET). NeuroImage 169: 524-539 (2018)
[j7]
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Zhengwu Zhang, Maxime Descoteaux, Jingwen Zhang, Gabriel Girard, Maxime Chamberland, David B. Dunson, Anuj Srivastava, Hongtu Zhu:
Mapping population-based structural connectomes. NeuroImage 172: 130-145 (2018)
2017
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  - journals/brain/ChamberlandGBFD17
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Maxime Chamberland, Gabriel Girard, Michaël Bernier, David Fortin, Maxime Descoteaux, Kevin Whittingstall:
On the Origin of Individual Functional Connectivity Variability: The Role of White Matter Architecture. Brain Connect. 7(8): 491-503 (2017)
2016
[b1]
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Gabriel Girard:
White matter tractography guided by anatomical and microstructural priors. (Tractographie de la matière blanche orientée par a priori anatomiques et microstructurels). University of Nice Sophia Antipolis, France, 2016
2015
[c5]
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Gabriel Girard, Rutger Fick, Maxime Descoteaux, Rachid Deriche, Demian Wassermann:
AxTract: Microstructure-Driven Tractography Based on the Ensemble Average Propagator. IPMI 2015: 675-686
[c4]
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Rutger Henri Jacques Fick, Mauro Zucchelli, Gabriel Girard, Maxime Descoteaux, Gloria Menegaz, Rachid Deriche:
Using 3D-SHORE and MAP-MRI to obtain both tractography and microstructural constrast from a clinical DMRI acquisition. ISBI 2015: 436-439
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Jorg M. Portegies, Rutger Henri Jacques Fick, Gonzalo R. Sanguinetti, Stephan P. L. Meesters, Gabriel Girard, Remco Duits:
Improving Fiber Alignment in HARDI by Combining Contextual PDE Flow with Constrained Spherical Deconvolution. CoRR abs/1506.07062 (2015)
2014
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Gabriel Girard, Kevin Whittingstall, Rachid Deriche, Maxime Descoteaux:
Towards quantitative connectivity analysis: reducing tractography biases. NeuroImage 98: 266-278 (2014)
2013
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Marc-Alexandre Côté, Gabriel Girard, Arnaud Boré, Eleftherios Garyfallidis, Jean-Christophe Houde, Maxime Descoteaux:
Tractometer: Towards validation of tractography pipelines. Medical Image Anal. 17(7): 844-857 (2013)
2012
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Marc-Alexandre Côté, Arnaud Boré, Gabriel Girard, Jean-Christophe Houde, Maxime Descoteaux:
Tractometer: Online Evaluation System for Tractography. MICCAI (1) 2012: 699-706
2011
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Gabriel Girard, Stéphane Côté, Sisi Zlatanova, Yannick Barette, Johanne St-Pierre, Peter van Oosterom:
Indoor Pedestrian Navigation Using Foot-Mounted IMU and Portable Ultrasound Range Sensors. Sensors 11(8): 7606-7624 (2011)
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Julien Desfossez, Justine Dieppedale, Gabriel Girard:
Stealth malware analysis from kernel space with Kolumbo. J. Comput. Virol. 7(1): 83-93 (2011)

2000 – 2009

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2006
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Laurent Birtz, Gabriel Girard:
The Snowflakes Distributed Computing System. HPCS 2006: 10
2003
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Hon Fung Li, Gabriel Girard:
View consistencies and exact implementations. Parallel Comput. 29(1): 37-67 (2003)

1990 – 1999

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1999
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Gabriel Girard, Hon Fung Li:
Evaluation of Two Optimized Protocols for Sequential Consistency. HICSS 1999

Coauthor Index

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