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Hilmar Lapp
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2020 – today
- 2024
- [i13]Kazi Sajeed Mehrab, M. Maruf, Arka Daw, Harish Babu Manogaran, Abhilash Neog, Mridul Khurana, Bahadir Altintas, Yasin Bakis, Elizabeth G. Campolongo, Matthew J. Thompson, Xiaojun Wang, Hilmar Lapp, Wei-Lun Chao, Paula M. Mabee, Henry L. Bart Jr., Wasila M. Dahdul, Anuj Karpatne:
Fish-Vista: A Multi-Purpose Dataset for Understanding & Identification of Traits from Images. CoRR abs/2407.08027 (2024) - [i12]Mridul Khurana, Arka Daw, M. Maruf, Josef C. Uyeda, Wasila M. Dahdul, Caleb Charpentier, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Wei-Lun Chao, Charles V. Stewart, Tanya Y. Berger-Wolf, Anuj Karpatne:
Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution. CoRR abs/2408.00160 (2024) - [i11]M. Maruf, Arka Daw, Kazi Sajeed Mehrab, Harish Babu Manogaran, Abhilash Neog, Medha Sawhney, Mridul Khurana, James P. Balhoff, Yasin Bakis, Bahadir Altintas, Matthew J. Thompson, Elizabeth G. Campolongo, Josef C. Uyeda, Hilmar Lapp, Henry L. Bart Jr., Paula M. Mabee, Yu Su, Wei-Lun Chao, Charles V. Stewart, Tanya Y. Berger-Wolf, Wasila M. Dahdul, Anuj Karpatne:
VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological Images. CoRR abs/2408.16176 (2024) - [i10]Harish Babu Manogaran, M. Maruf, Arka Daw, Kazi Sajeed Mehrab, Caleb Charpentier, Josef C. Uyeda, Wasila M. Dahdul, Matthew J. Thompson, Elizabeth G. Campolongo, Kaiya Provost, Paula M. Mabee, Hilmar Lapp, Anuj Karpatne:
What Do You See in Common? Learning Hierarchical Prototypes over Tree-of-Life to Discover Evolutionary Traits. CoRR abs/2409.02335 (2024) - 2023
- [c12]Mohannad Elhamod
, Mridul Khurana
Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks. KDD 2023: 3966-3978 - [i9]Mohannad Elhamod, Mridul Khurana, Harish Babu Manogaran, Josef C. Uyeda, Meghan A. Balk, Wasila M. Dahdul, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Caleb Charpentier, David Carlyn, Wei-Lun Chao, Charles V. Stewart, Daniel I. Rubenstein, Tanya Y. Berger-Wolf, Anuj Karpatne:
Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks. CoRR abs/2306.03228 (2023) - 2021
- [j15]Gaurav Vaidya
JPhyloRef: a tool for testing and resolving phyloreferences. J. Open Source Softw. 6(64): 3374 (2021) - [c11]Aaron Eberhart, David Carral, Pascal Hitzler, Hilmar Lapp, Sebastian Rudolph:
Seed Patterns for Modeling Trees. WOP (Book) 2021: 48-67 - 2020
- [j14]Stephen K. Woody, David Burdick, Hilmar Lapp
Application programming interfaces for knowledge transfer and generation in the life sciences and healthcare. npj Digit. Medicine 3 (2020) - [j13]Stephen K. Woody, David Burdick, Hilmar Lapp
Publisher Correction: Application programming interfaces for knowledge transfer and generation in the life sciences and healthcare. npj Digit. Medicine 3 (2020)
2010 – 2019
- 2018
- [j12]Wasila M. Dahdul
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. Database J. Biol. Databases Curation 2018: bay110 (2018) - [c10]Paula M. Mabee, James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Christopher J. Mungall, Todd J. Vision:
Reasoning over Anatomical Homology in the Phenoscape KB. ICBO 2018 - [p2]Ian Braun, James P. Balhoff, Tanya Z. Berardini, Laurel Cooper, Georgios V. Gkoutos, Lisa C. Harper, Eva Huala, Pankaj Jaiswal, Toni Kazic, Hilmar Lapp
'Computable' Phenotypes Enable Comparative and Predictive Phenomics Among Plant Species and Across Domains of Life. Application of Semantic Technology in Biodiversity Science 2018: 187-205 - [p1]Paula M. Mabee, Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp
Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology. Application of Semantic Technology in Biodiversity Science 2018: 207-224 - [i8]Nomi L. Harris
The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018). F1000Research 7: 1309 (2018) - 2017
- [c9]David Carral, Pascal Hitzler, Hilmar Lapp, Sebastian Rudolph
On the Ontological Modeling of Trees. WOP@ISWC 2017 - [i7]David Carral, Pascal Hitzler, Hilmar Lapp
On the Ontological Modeling of Trees. CoRR abs/1710.05096 (2017) - [i6]Arlin Stoltzfus
Community and Code: Nine Lessons from Nine NESCent Hackathons. F1000Research 6: 786- (2017) - [i5]Nomi L. Harris
The 2017 Bioinformatics Open Source Conference (BOSC). F1000Research 6: 1858- (2017) - 2016
- [j11]Nomi L. Harris
The 2015 Bioinformatics Open Source Conference (BOSC 2015). PLoS Comput. Biol. 12(2) (2016) - [c8]Prashanti Manda, Christopher J. Mungall, James P. Balhoff, Hilmar Lapp, Todd J. Vision:
Investigating the Importance of Anatomical Homology for Cross-Species Phenotype Comparisons Using Semantic Similarity. PSB 2016: 132-143 - [i4]Nomi L. Harris
The 2016 Bioinformatics Open Source Conference (BOSC). F1000Research 5: 2464 (2016) - 2015
- [j10]Wasila M. Dahdul
Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy. Database J. Biol. Databases Curation 2015 (2015) - [j9]Nomi L. Harris
The Bioinformatics Open Source Conference (BOSC) 2013. Bioinform. 31(2): 299-300 (2015) - 2014
- [j8]James P. Balhoff
Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex. J. Biomed. Semant. 5: 45 (2014) - [i3]Daniel S. Katz, Sou-Cheng T. Choi, Hilmar Lapp, Ketan Maheshwari, Frank Löffler, Matthew J. Turk, Marcus D. Hanwell, Nancy Wilkins-Diehr, James Hetherington, James Howison, Shel Swenson, Gabrielle Allen, Anne C. Elster, G. Bruce Berriman
Summary of the First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE1). CoRR abs/1404.7414 (2014) - [i2]James P. Balhoff, T. Alexander Dececchi, Paula M. Mabee, Hilmar Lapp:
Presence-absence reasoning for evolutionary phenotypes. CoRR abs/1410.3862 (2014) - 2013
- [j7]Peter E. Midford
The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes. J. Biomed. Semant. 4: 34 (2013) - [j6]Arlin Stoltzfus
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. BMC Bioinform. 14: 158 (2013) - [i1]Daisie Huang, Hilmar Lapp:
Software Engineering as Instrumentation for the Long Tail of Scientific Software. CoRR abs/1309.1806 (2013) - 2012
- [j5]Andreas Prlic
The PLOS Computational Biology Software Section. PLoS Comput. Biol. 8(11) (2012) - 2011
- [j4]Sook Jung, Naama Menda, Seth Redmond
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. Database J. Biol. Databases Curation 2011 (2011) - [c7]James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee:
Employing Reasoning within the Phenoscape Knowledgebase. ICBO 2011 - [c6]James P. Balhoff, Peter E. Midford, Hilmar Lapp:
Integrating Anatomy and Phenotype Ontologies with Taxonomic Hierarchies. ICBO 2011 - [c5]Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee:
Phenoscape: Use Cases and Anatomy Ontology Requirements for Linking Evolutionary and Model Organism Phenotypes. ICBO 2011 - [c4]Todd J. Vision, Judith A. Blake, Hilmar Lapp, Paula M. Mabee, Monte Westerfield:
Similarity Between Semantic Description Sets: Addressing Needs Beyond Data Integration. LISC 2011 - 2010
- [j3]Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1: 8 (2010)
2000 – 2009
- 2006
- [j2]Jason E. Stajich
Open source tools and toolkits for bioinformatics: significance, and where are we? Briefings Bioinform. 7(3): 287-296 (2006) - 2003
- [j1]Norbert Brändle
Robust DNA microarray image analysis. Mach. Vis. Appl. 15(1): 11-28 (2003) - 2000
- [c3]Horng-Yang Chen, Norbert Brändle, Horst Bischof, Hilmar Lapp:
Robust Spot Fitting for Genetic Spot Array Images. ICIP 2000: 412-415 - [c2]Norbert Brändle, Horng-Yang Chen, Horst Bischof, Hilmar Lapp:
Robust Parametric and Semi-Parametric Spot Fitting for Spot Array Images. ISMB 2000: 46-56
1990 – 1999
- 1999
- [c1]Norbert Brändle, Hilmar Lapp
Automatic Grid Fitting for Genetic Spot Array Images Containing Guide Spots. CAIP 1999: 357-366
Coauthor Index
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last updated on 2024-10-07 22:19 CEST by the dblp team
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