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Zhi-Ping Liu
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2020 – today
- 2025
- [j42]Chuanyan Wu
, Bentao Lin, Huanghe Zhang
GCNPMDA: Human microbe-disease association prediction by hierarchical graph convolutional network with layer attention. Biomed. Signal Process. Control. 100: 107004 (2025) - 2024
- [j41]Dezhen Zhang, Shuhua Gao, Zhi-Ping Liu
LogicGep: Boolean networks inference using symbolic regression from time-series transcriptomic profiling data. Briefings Bioinform. 25(4) (2024) - [j40]Yanqiu Wang, Tong Wang, Yi Cao, Xu Qiao, Xianhua Han, Zhi-Ping Liu:
TopMarker: Computational screening biomarkers of hepatocellular carcinoma from transcriptome and interactome based on differential network topological parameters. Comput. Biol. Chem. 112: 108166 (2024) - [j39]Chuan-Yuan Wang
Network Activity Evaluation Reveals Significant Gene Regulatory Architectures During SARS-CoV-2 Viral Infection From Dynamic scRNA-seq Data. IEEE J. Biomed. Health Informatics 28(4): 2373-2384 (2024) - [c14]Yunhai Li, Pengpai Li, Duanchen Sun, Zhi-Ping Liu:
Predicting Drug-Target Affinity Using Protein Pocket and Graph Convolution Network. ISBRA (1) 2024: 1-12 - 2023
- [j38]Lingyu Li
LogBTF: gene regulatory network inference using Boolean threshold network model from single-cell gene expression data. Bioinform. 39(5) (2023) - [j37]Chuan-Yuan Wang
ActivePPI: quantifying protein-protein interaction network activity with Markov random fields. Bioinform. 39(9) (2023) - [j36]Lingyu Li
Biomarker discovery from high-throughput data by connected network-constrained support vector machine. Expert Syst. Appl. 226: 120179 (2023) - [j35]Zhi-Ping Liu:
Editorial: Insights in integrative bioinformatics-2021. Frontiers Bioinform. 3 (2023) - [c13]Jiaxin Yang, Chuan-Yuan Wang, Duanchen Sun, Zhi-Ping Liu:
Multi-objective Optimization-Based Approach for Detection of Breast Cancer Biomarkers. ICIC (3) 2023: 716-726 - [c12]Chunxiao Zhang, Pengpai Li, Duanchen Sun, Zhi-Ping Liu:
MOFNet: A Deep Learning Framework of Integrating Multi-omics Data for Breast Cancer Diagnosis. ICIC (3) 2023: 727-738 - [i3]Min-Gang Zhou, Zhi-Ping Liu, Hua-Lei Yin, Chen-Long Li, Tong-Kai Xu, Zeng-Bing Chen:
Quantum Neural Network for Quantum Neural Computing. CoRR abs/2305.08544 (2023) - 2022
- [j34]Lingyu Li
A connected network-regularized logistic regression model for feature selection. Appl. Intell. 52(10): 11672-11702 (2022) - [j33]Pengpai Li, Zhi-Ping Liu
PST-PRNA: prediction of RNA-binding sites using protein surface topography and deep learning. Bioinform. 38(8): 2162-2168 (2022) - [j32]Guangyi Chen, Zhi-Ping Liu
Graph attention network for link prediction of gene regulations from single-cell RNA-sequencing data. Bioinform. 38(19): 4522-4529 (2022) - [j31]Yijuan Wang, Zhi-Ping Liu
Identifying biomarkers for breast cancer by gene regulatory network rewiring. BMC Bioinform. 22-S(12): 308 (2022) - [j30]Lingyu Li
Robust biomarker screening from gene expression data by stable machine learning-recursive feature elimination methods. Comput. Biol. Chem. 100: 107747 (2022) - [j29]Na Yu
Predicting multiple types of MicroRNA-disease associations based on tensor factorization and label propagation. Comput. Biol. Medicine 146: 105558 (2022) - [j28]Dawei Li, Zhi-Ping Liu
Predicting Box-Office Markets with Machine Learning Methods. Entropy 24(5): 711 (2022) - [j27]Zishuang Zhang, Chenxi Sun, Zhi-Ping Liu
Discovering biomarkers of hepatocellular carcinoma from single-cell RNA sequencing data by cooperative games on gene regulatory network. J. Comput. Sci. 65: 101881 (2022) - [j26]Chuan-Yuan Wang
Evaluating Gene Regulatory Network Activity From Dynamic Expression Data by Regularized Constraint Programming. IEEE J. Biomed. Health Informatics 26(11): 5738-5749 (2022) - [c11]Guoqing Zhao, Pengpai Li, Zhi-Ping Liu:
A Comparison Study of Predicting lncRNA-Protein Interactions via Representative Network Embedding Methods. ICIC (2) 2022: 3-13 - [i2]Zhi-Ping Liu, Min-Gang Zhou, Wen-Bo Liu, Chen-Long Li, Jie Gu, Hua-Lei Yin, Zeng-Bing Chen:
Automated machine learning for secure key rate in discrete-modulated continuous-variable quantum key distribution. CoRR abs/2201.09419 (2022) - 2021
- [j25]Pengpai Li
Prediction of cardiovascular diseases by integrating multi-modal features with machine learning methods. Biomed. Signal Process. Control. 66: 102474 (2021) - [j24]Haixia Shang, Zhi-Ping Liu
Prioritizing Type 2 Diabetes Genes by Weighted PageRank on Bilayer Heterogeneous Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 18(1): 336-346 (2021) - [c10]Na Yu
A Semi-Supervised Learning Algorithm for Predicting MiRNA-Disease Association. BIBM 2021: 771-774 - [c9]Guangyi Chen, Zhi-Ping Liu:
Inference of Gene Regulatory Network from Time Series Expression Data by Combining Local Geometric Similarity and Multivariate Regression. ICIC (3) 2021: 345-355 - 2020
- [j23]Haixia Shang, Zhi-Ping Liu:
Network-based prioritization of cancer genes by integrative ranks from multi-omics data. Comput. Biol. Medicine 119: 103692 (2020) - [c8]Yaohua Chang, Zhi-Ping Liu:
iNOA: An Improvement of Network Ontology Analysis with GO Semantic Similarity. ICBIP 2020: 56-61
2010 – 2019
- 2019
- [c7]Zishuang Zhang, Zhi-Ping Liu:
Identifying Cancer Biomarkers from High-Throughput RNA Sequencing Data by Machine Learning. ICIC (2) 2019: 517-528 - 2018
- [j22]Zhi-Ping Liu
Detecting pathway biomarkers of diabetic progression with differential entropy. J. Biomed. Informatics 82: 143-153 (2018) - [j21]Zhi-Ping Liu:
Towards precise reconstruction of gene regulatory networks by data integration. Quant. Biol. 6(2): 113-128 (2018) - 2017
- [j20]Zhi-Ping Liu, Shutang Liu, Ruitang Chen, Xiaopeng Huang, Ling-Yun Wu
Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces. BMC Bioinform. 18(1): 27:1-27:13 (2017) - [j19]Xu Qiao, Xiaoqing Liu, Yen-Wei Chen, Zhi-Ping Liu:
Multi-dimensional data representation using linear tensor coding. IET Image Process. 11(7): 492-501 (2017) - 2016
- [j18]Guangyong Zheng, Yaochen Xu, Xiujun Zhang
CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data. BMC Bioinform. 17(S-17): 137-144 (2016) - [j17]Zhi-Ping Liu, Hongyu Miao:
Prediction of protein-RNA interactions using sequence and structure descriptors. Neurocomputing 206: 28-34 (2016) - 2015
- [j16]Zhi-Ping Liu, Canglin Wu, Hongyu Miao, Hulin Wu:
RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse. Database J. Biol. Databases Curation 2015 (2015) - [j15]Xindong Zhang, Lin Gao, Zhi-Ping Liu, Luonan Chen:
Identifying module biomarker in type 2 diabetes mellitus by discriminative area of functional activity. BMC Bioinform. 16: 92:1-92:10 (2015) - [i1]Hui-Jia Li, Junhua Zhang, Zhi-Ping Liu, Luonan Chen, Xiang-Sun Zhang:
Identifying overlapping communities in social networks using multi-scale local information expansion. CoRR abs/1503.08024 (2015) - 2014
- [j14]Zhi-Ping Liu, Hulin Wu, Jian Zhu, Hongyu Miao:
Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection. BMC Bioinform. 15: 336 (2014) - 2013
- [j13]Xiujun Zhang
NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference. Bioinform. 29(1): 106-113 (2013) - [j12]Zhenshu Wen, Zhi-Ping Liu, Zhengrong Liu, Yan Zhang, Luonan Chen:
Research and applications: An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer. J. Am. Medical Informatics Assoc. 20(4): 659-667 (2013) - 2012
- [j11]Xiujun Zhang
Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information. Bioinform. 28(1): 98-104 (2012) - [j10]Keqin Liu, Zhi-Ping Liu, Jin-Kao Hao
Identifying dysregulated pathways in cancers from pathway interaction networks. BMC Bioinform. 13: 126 (2012) - [j9]Zhi-Ping Liu, Jiguang Wang
Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs. BMC Bioinform. 13(S-7): S6 (2012) - [j8]Guanying Piao, Shigeru Saito, Yidan Sun, Zhi-Ping Liu, Yong Wang, Xiao Han, Jiarui Wu, Huarong Zhou, Luonan Chen, Katsuhisa Horimoto:
A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats. BMC Syst. Biol. 6(S-1): S2 (2012) - [j7]Jianghua Zhang
Multiple-resource and multiple-depot emergency response problem considering secondary disasters. Expert Syst. Appl. 39(12): 11066-11071 (2012) - [j6]Xiaoping Liu
Identifying disease genes and module biomarkers by differential interactions. J. Am. Medical Informatics Assoc. 19(2): 241-248 (2012) - [c6]Zhi-Ping Liu, Wanwei Zhang
A Gaussian graphical model for identifying significantly responsive regulatory networks from time series gene expression data. ISB 2012: 142-147 - [c5]Yang Liu, Jin Zhou, Zhi-Ping Liu, Luonan Chen, Michael K. Ng
Construction and analysis of genome-wide SNP networks. ISB 2012: 327-332 - 2011
- [j5]Huarong Zhou, Shigeru Saito, Guanying Piao, Zhi-Ping Liu, Jiguang Wang
Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression. BMC Syst. Biol. 5(S-1): S16 (2011) - [c4]Zhi-Ping Liu, Jiguang Wang
Inferring Protein-Protein Interactions Based on Sequences and Interologs in Mycobacterium Tuberculosis. ICIC (3) 2011: 91-96 - 2010
- [j4]Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen:
Prediction of protein-RNA binding sites by a random forest method with combined features. Bioinform. 26(13): 1616-1622 (2010) - [j3]Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang, Luonan Chen:
Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains. BMC Syst. Biol. 4(S-2): S11 (2010) - [c3]Zhi-Ping Liu, Xiang-Sun Zhang, Luonan Chen:
Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ICMLC 2010: 3067-3072
2000 – 2009
- 2009
- [c2]Zhi-Ping Liu, Yong Wang, Tieqiao Wen, Xiang-Sun Zhang, Weiming Xia, Luonan Chen:
Dynamically dysfunctional protein interactions in the development of Alzheimer's disease. SMC 2009: 4262-4267 - 2008
- [j2]Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen:
Protein cavity clustering based on community structure of pocket similarity network. Int. J. Bioinform. Res. Appl. 4(4): 445-460 (2008) - 2007
- [j1]Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Luonan Chen, Xiang-Sun Zhang:
Predicting gene ontology functions from protein's regional surface structures. BMC Bioinform. 8 (2007) - 2006
- [c1]Xiao-Yuan Wang, Hai-hong Liu, Zhi-Ping Liu:
Short-Time Traffic Flow Forecasting Based on Projection Pursuit Auto-Regression. ICICIC (1) 2006: 707-711
Coauthor Index
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last updated on 2024-11-07 21:32 CET by the dblp team
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