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Joan Segura
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2020 – today
- 2023
- [j19]Joan Segura, Yana Rose, Chunxiao Bi, Jose M. Duarte, Stephen K. Burley, Sebastian Bittrich:
RCSB Protein Data Bank: visualizing groups of experimentally determined PDB structures alongside computed structure models of proteins. Frontiers Bioinform. 3 (2023) - [j18]Stephen K. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao, Li Chen, Paul A. Craig, Gregg V. Crichlow, Kenneth Dalenberg, Jose M. Duarte, Shuchismita Dutta, Maryam Fayazi, Zukang Feng, Justin W. Flatt, Sai Ganesan, Sutapa Ghosh, David S. Goodsell, Rachel Kramer Green, Vladimir Guranovic, Jeremy Henry, Brian P. Hudson, Igor Khokhriakov, Catherine L. Lawson, Yuhe Liang, Robert Lowe, Ezra Peisach, Irina Persikova, Dennis W. Piehl, Yana Rose, Andrej Sali, Joan Segura, Monica Sekharan, Chenghua Shao, Brinda Vallat, Maria Voigt, Ben M. Webb, John D. Westbrook, Shamara Whetstone, Jasmine Young, Arthur O. Zalevsky, Christine Zardecki:
RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning. Nucleic Acids Res. 51(D1): 488-508 (2023) - 2022
- [j17]Sebastian Bittrich, Yana Rose, Joan Segura, Robert Lowe, John D. Westbrook, Jose M. Duarte, Stephen K. Burley:
RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB. Bioinform. 38(5): 1452-1454 (2022) - [j16]Joan Segura, Yana Rose, Sebastian Bittrich, Stephen K. Burley, Jose M. Duarte:
RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies. Bioinform. 38(12): 3304-3305 (2022) - 2021
- [j15]Joan Segura, Yana Rose, John D. Westbrook, Stephen K. Burley, Jose M. Duarte:
RCSB Protein Data Bank 1D tools and services. Bioinform. 36(22-23): 5526-5527 (2021) - [j14]Stephen K. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Li Chen, Gregg V. Crichlow, Cole H. Christie, Kenneth Dalenberg, Luigi Di Costanzo, Jose M. Duarte, Shuchismita Dutta, Zukang Feng, Sai Ganesan, David S. Goodsell, Sutapa Ghosh, Rachel Kramer Green, Vladimir Guranovic, Dmytro Guzenko, Brian P. Hudson, Catherine L. Lawson, Yuhe Liang, Robert Lowe, Harry Namkoong, Ezra Peisach, Irina Persikova, Christopher Randle, Alexander S. Rose, Yana Rose, Andrej Sali, Joan Segura, Monica Sekharan, Chenghua Shao, Yi-Ping Tao, Maria Voigt, John D. Westbrook, Jasmine Young, Christine Zardecki, Marina Zhuravleva:
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. Nucleic Acids Res. 49(Database-Issue): D437-D451 (2021)
2010 – 2019
- 2019
- [j13]Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo, Joan Segura:
BIPSPI: a method for the prediction of partner-specific protein-protein interfaces. Bioinform. 35(3): 470-477 (2019) - [j12]Amaya Jiménez, Slavica Jonic, Tomás Majtner, Joaquín Otón, Jose Luis Vilas, David Maluenda, Javier Mota, Erney Ramírez-Aportela, Marta Martínez, Yaiza Rancel, Joan Segura, Rubén Sánchez García, Roberto Melero, Laura del Cano, Pablo Conesa, Lars Skjaerven, Roberto Marabini, José María Carazo, Carlos Oscar Sánchez Sorzano:
Validation of electron microscopy initial models via small angle X-ray scattering curves. Bioinform. 35(14): 2427-2433 (2019) - [j11]Joan Segura, Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo:
3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations. Bioinform. 35(18): 3512-3513 (2019) - 2017
- [j10]Joan Segura, Rubén Sánchez García, Marta Martínez, Jesús Cuenca Alba, Daniel Tabas-Madrid, Carlos Oscar Sánchez Sorzano, José María Carazo:
3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures. Bioinform. 33(22): 3655-3657 (2017) - 2015
- [j9]Joan Segura, Carlos Oscar Sánchez Sorzano, Jesús Cuenca Alba, Patrick Aloy, José María Carazo:
Using neighborhood cohesiveness to infer interactions between protein domains. Bioinform. 31(15): 2545-2552 (2015) - 2014
- [j8]Jaume Bonet, Joan Segura, Joan Planas-Iglesias, Baldomero Oliva, Narcis Fernandez-Fuentes:
Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design. Bioinform. 30(13): 1935-1936 (2014) - 2012
- [j7]Natalia Jiménez-Lozano, Joan Segura, José Ramón Macías, Juanjo Vega, José María Carazo:
Integrating human and murine anatomical gene expression data for improved comparisons. Bioinform. 28(3): 397-402 (2012) - [j6]Joan Segura, Pamela F. Jones, Narcis Fernandez-Fuentes:
A holistic in silico approach to predict functional sites in protein structures. Bioinform. 28(14): 1845-1850 (2012) - [j5]Joan Segura, Baldomero Oliva, Narcis Fernandez-Fuentes:
CAPS-DB: a structural classification of helix-capping motifs. Nucleic Acids Res. 40(Database-Issue): 479-485 (2012) - 2011
- [j4]Joan Segura, Pamela F. Jones, Narcis Fernandez-Fuentes:
Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi Diagrams. BMC Bioinform. 12: 352 (2011) - [j3]Joan Segura, Narcis Fernandez-Fuentes:
PCRPi-DB: a database of computationally annotated hot spots in protein interfaces. Nucleic Acids Res. 39(Database-Issue): 755-760 (2011)
2000 – 2009
- 2009
- [j2]Jairo Rocha, Joan Segura, Richard C. Wilson, Swagata Dasgupta:
Flexible structural protein alignment by a sequence of local transformations. Bioinform. 25(13): 1625-1631 (2009) - [j1]Natalia Jiménez-Lozano, Joan Segura, José Ramón Macías, Juanjo Vega, José María Carazo:
aGEM: an integrative system for analyzing spatial-temporal gene-expression information. Bioinform. 25(19): 2566-2572 (2009) - 2006
- [i1]Jairo Rocha, Francesc Rosselló, Joan Segura:
Compression ratios based on the Universal Similarity Metric still yield protein distances far from CATH distances. CoRR abs/q-bio/0603007 (2006)
Coauthor Index
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