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Radek Erban
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2010 – 2019
- 2017
- [j21]Edward Rolls, Yuichi Togashi, Radek Erban:
Varying the Resolution of the Rouse Model on Temporal and Spatial Scales: Application to Multiscale Modeling of DNA Dynamics. Multiscale Model. Simul. 15(4): 1672-1693 (2017) - [j20]Mihai Cucuringu, Radek Erban:
ADM-CLE Approach for Detecting Slow Variables in Continuous Time Markov Chains and Dynamic Data. SIAM J. Sci. Comput. 39(1) (2017) - 2016
- [j19]Andrew B. Duncan, Radek Erban, Konstantinos C. Zygalakis
:
Hybrid framework for the simulation of stochastic chemical kinetics. J. Comput. Phys. 326: 398-419 (2016) - [j18]Ulrich Dobramysl
Particle-Based Multiscale Modeling of Calcium Puff Dynamics. Multiscale Model. Simul. 14(3): 997-1016 (2016) - [j17]S. Jonathan Chapman
Reactive Boundary Conditions as Limits of Interaction Potentials for Brownian and Langevin Dynamics. SIAM J. Appl. Math. 76(1): 368-390 (2016) - [j16]Radek Erban, Jan Haskovec
A Cucker-Smale Model with Noise and Delay. SIAM J. Appl. Math. 76(4): 1535-1557 (2016) - [j15]Simon L. Cotter
Error Analysis of Diffusion Approximation Methods for Multiscale Systems in Reaction Kinetics. SIAM J. Sci. Comput. 38(1) (2016) - 2015
- [j14]Martin Robinson
Multiscale reaction-diffusion simulations with Smoldyn. Bioinform. 31(14): 2406-2408 (2015) - [j13]Mark B. Flegg, Stefan Hellander, Radek Erban:
Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations. J. Comput. Phys. 289: 1-17 (2015) - [i2]Mihai Cucuringu, Radek Erban:
ADM-CLE approach for detecting slow variables in continuous time Markov chains and dynamic data. CoRR abs/1504.01786 (2015) - 2014
- [j12]Wan Chen, Radek Erban, S. Jonathan Chapman
From Brownian Dynamics to Markov Chain: An Ion Channel Example. SIAM J. Appl. Math. 74(1): 208-235 (2014) - [j11]Mark B. Flegg, S. Jonathan Chapman
Analysis of the Two-Regime Method on Square Meshes. SIAM J. Sci. Comput. 36(3) (2014) - [i1]Jake P. Taylor-King, Benjamin Franz, Christian A. Yates, Radek Erban:
Mathematical Modelling of Turning Delays in Swarm Robotics. CoRR abs/1401.7612 (2014) - 2013
- [j10]Benjamin Franz, Mark B. Flegg, S. Jonathan Chapman
Multiscale Reaction-Diffusion Algorithms: PDE-Assisted Brownian Dynamics. SIAM J. Appl. Math. 73(3): 1224-1247 (2013) - [j9]Simon L. Cotter
Adaptive Finite Element Method Assisted by Stochastic Simulation of Chemical Systems. SIAM J. Sci. Comput. 35(1) (2013) - 2012
- [j8]Tamás Székely
A higher-order numerical framework for stochastic simulation of chemical reaction systems. BMC Syst. Biol. 6: 85 (2012) - [j7]Guido Klingbeil, Radek Erban, Mike B. Giles
Fat versus Thin Threading Approach on GPUs: Application to Stochastic Simulation of Chemical Reactions. IEEE Trans. Parallel Distributed Syst. 23(2): 280-287 (2012) - 2011
- [j6]Guido Klingbeil, Radek Erban, Mike B. Giles
STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB. Bioinform. 27(8): 1170-1171 (2011) - [j5]Jana Lipková, Konstantinos C. Zygalakis
Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions. SIAM J. Appl. Math. 71(3): 714-730 (2011)
2000 – 2009
- 2009
- [j4]Radek Erban, S. Jonathan Chapman
Analysis of a Stochastic Chemical System Close to a SNIPER Bifurcation of Its Mean-Field Model. SIAM J. Appl. Math. 70(3): 984-1016 (2009) - 2007
- [j3]Michail E. Kavousanakis, Radek Erban, Andreas G. Boudouvis
Projective and coarse projective integration for problems with continuous symmetries. J. Comput. Phys. 225(1): 382-407 (2007) - 2005
- [j2]Radek Erban, Hans G. Othmer:
From Signal Transduction to Spatial Pattern Formation in E. coli: A Paradigm for Multiscale Modeling in Biology. Multiscale Model. Simul. 3(2): 362-394 (2005) - 2004
- [j1]Radek Erban, Hans G. Othmer:
From Individual to Collective Behavior in Bacterial Chemotaxis. SIAM J. Appl. Math. 65(2): 361-391 (2004)
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