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Manja Marz
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- affiliation: Friedrich Schiller University Jena, Institute of Computer Science
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2020 – today
- 2023
- [j17]Guillermo Rangel-Pineros
, Alexandre Almeida, Martin Beracochea
VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models. PLoS Comput. Biol. 19(8) (2023) - 2021
- [j16]Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. Briefings Bioinform. 22(2): 642-663 (2021) - [j15]Florian Mock
VIDHOP, viral host prediction with deep learning. Bioinform. 37(3): 318-325 (2021) - [j14]Maximilian Collatz, Florian Mock
EpiDope: a deep neural network for linear B-cell epitope prediction. Bioinform. 37(4): 448-455 (2021) - [j13]Martin Hölzer, Manja Marz
PoSeiDon: a Nextflow pipeline for the detection of evolutionary recombination events and positive selection. Bioinform. 37(7): 1018-1020 (2021) - [j12]Maximilian Collatz, Florian Mock, Emanuel Barth
EpiDope: a deep neural network for linear B-cell epitope prediction. Bioinform. 37(12): 1784 (2021) - [j11]Ioanna Kalvari
Rfam 14: expanded coverage of metagenomic, viral and microRNA families. Nucleic Acids Res. 49(Database-Issue): D192-D200 (2021) - 2020
- [j10]Akash Srivastava
Tissue-specific Gene Expression Changes Are Associated with Aging in Mice. Genom. Proteom. Bioinform. 18(4): 430-442 (2020)
2010 – 2019
- 2019
- [j9]Markus Fricke, Ruman Gerst, Bashar Ibrahim
Global importance of RNA secondary structures in protein-coding sequences. Bioinform. 35(4): 579-583 (2019) - 2016
- [j8]Markus Fricke, Manja Marz
Prediction of conserved long-range RNA-RNA interactions in full viral genomes. Bioinform. 32(19): 2928-2935 (2016) - 2014
- [j7]Jing Qin
Graph-distance distribution of the Boltzmann ensemble of RNA secondary structures. Algorithms Mol. Biol. 9: 19 (2014) - [j6]Manja Marz
Challenges in RNA virus bioinformatics. Bioinform. 30(13): 1793-1799 (2014) - [c4]Clemens Beckstein, Sebastian Böcker, Martin Bogdan, Helge Bruelheide, H. Martin Bücker, Joachim Denzler, Peter Dittrich, Ivo Grosse, Alexander Hinneburg, Birgitta König-Ries, Felicitas Löffler, Manja Marz, Matthias Müller-Hannemann, Martin Winter
Explorative Analysis of Heterogeneous, Unstructured, and Uncertain Data - A Computer Science Perspective on Biodiversity Research. DATA 2014: 251-257 - 2013
- [j5]Marcus Lechner, Manja Marz
The correlation of genome size and DNA methylation rate in metazoans. Theory Biosci. 132(1): 47-60 (2013) - [c3]Nicolas Wieseke, Marcus Lechner, Marcus Ludwig, Manja Marz
POMAGO: Multiple Genome-Wide Alignment Tool for Bacteria. ISBRA 2013: 249-260 - [c2]Rolf Backofen, Markus Fricke, Manja Marz, Jing Qin
Distribution of Graph-Distances in Boltzmann Ensembles of RNA Secondary Structures. WABI 2013: 112-125 - 2011
- [j4]Andrew X. Li, Manja Marz
RNA-RNA interaction prediction based on multiple sequence alignments. Bioinform. 27(4): 456-463 (2011) - [j3]Marcus Lechner, Sven Findeiß
Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis. BMC Bioinform. 12: 124 (2011) - 2010
- [j2]Manja Marz, Nathalie Vanzo, Peter F. Stadler
Temperature-Dependent Structural Variability of RNAs: spliced Leader RNAs and their Evolutionary History. J. Bioinform. Comput. Biol. 8(1): 1-17 (2010)
2000 – 2009
- 2009
- [c1]Todd Ingalls, Georg Martius, Manja Marz, Sonja J. Proshaka, Marc Hellmuth:
Converting DNA to Music: ComposAlign. GCB 2009: 93-103 - 2007
- [j1]Manja Marz
U7 snRNAs: A Computational Survey. Genom. Proteom. Bioinform. 5(3-4): 187-195 (2007)
Coauthor Index
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