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PeerJ PrePrints, Volume 5
Volume 5, 2017
- Mark D. Wilkinson
, Ruben Verborgh
Interoperability and FAIRness through a novel combination of Web technologies. e2522 - Guilherme Avelino, Marco Túlio Valente, André C. Hora:
What is the Truck Factor of popular GitHub applications? A first assessment. e1233 - Chun-Nan Hsu
Assessing value of biomedical digital repositories. e2688 - Soumya Banerjee:
An artificial immune system approach to automated program verification: Towards a theory of undecidability in biological computing. e2690 - Emmanuel Seaman, Jason Du:
System-on-chip sensor fusion front-end self-healing design for network-on-chip digital communications. e2694 - Carlos J. Corrada-Bravo, Rafael Álvarez Berríos, T. Mitchell Aide:
Species-specific audio detection: A comparison of three template-based classification algorithms using random forests. e2713 - Martin Leroux, Sofiane Achiche
Assessment of accuracy for target detection in 3D-space using eye tracking and computer vision. e2718 - Serena Dotolo, Angelo M. Facchiano
Pharmacophore modeling, virtual computational screening and biological evaluation studies. e2721 - Eddie A. Santos
Lifting the curse of stringly-typed code. e2723 - Elham Shahab, Hadi Abdolrahimpour:
A comprehensive investigation of visual cryptography and its role in secure communications. e2682 - Moritz Beller
How developers debug. e2743 - Chin-Wei Huang
Comprehensive model optimization in pulp quality prediction: a machine learning approach. e2749 - Ankur Roy Chowdhury:
IoT and Robotics: a synergy. e2760 - Florian Wagner
The XL-mHG test for gene set enrichment. e1962 - Shaiful Alam Chowdhury, Stephanie Gil, Stephen Romansky, Abram Hindle
Did I make a mistake? Finding the impact of code change on energy regression. e2419 - Daniele D'Agostino
A microservice-based portal for X-ray transient and variable sources. e2519
- Nan Wang:
Text parsing with Markov logic network. e2774 - Evangelia I. Zacharaki:
Prediction of protein function using a deep convolutional neural network ensemble. e2778 - Markus Luczak-Rösch
What an entangled Web we weave: An information-centric approach to socio-technical systems. e2789 - Cheng Lee:
A survey of the World Wide Web evolution with respect to security issues. e2793 - Olga Krestinskaya, Alex Pappachen James
Facial emotion recognition using Min-Max similarity classifier. e2794 - Neil Swainston
CodonGenie: optimised ambiguous codon design tools. e2797 - Yi Liu, Kwangjo Kim:
Understanding Web 2.0 service models, applications, reflections, perspectives, and beyond. e2811 - Alessandro Costa
An innovative workspace for the Cherenkov Telescope Array. e2817 - Eva Sciacca
Milky way analysis through a Science Gateway: workflows and resource monitoring. e2818 - Michael G. Zentner
HUBzero and CatalyzeCare: A community driven platform for data sharing and collaboration in medical informatics research. e2819 - Eugenio Del Prete
Suitable reporting for the reproducible research: an added value in the analysis of proteomics data. e2823 - Richard Allen White III
MerCat: a versatile k-mer counter and diversity estimator for database-independent property analysis obtained from metagenomic and/or metatranscriptomic sequencing data. e2825 - Richard Grunzke, Volker Hartmann, Thomas Jejkal, Ajinkya Prabhune, Hendrik Herold
Towards a metadata-driven multi-community research data management service. e2831 - Paul Fremantle
A survey of secure middleware for the Internet of Things. e1241 - Don L. Jewett:
When scholars use Knowledge-Step Forums to create Web-Compended Guides to the literature of their fields, paradigm-shifts will occur in the processes of knowledge creation and in graduate education. e1568 - Maria A. Brovelli, Candan E. Kilsedar, Patrick J. Hogan, Gabriele Prestifilippo, Giorgio Zamboni:
NASA World Wind: virtual globe for an open smart city. e2139 - Soumya Banerjee:
A computational technique to estimate within-host productively infected cell lifetimes in emerging viral infections. e2621 - Albert Krewinkel
Formatting Open Science: agilely creating multiple document formats for academic manuscripts with Pandoc Scholar. e2648
- Donatello Elia, Alessandra Nuzzo, Paola Nassisi, Sandro Fiore, Ignacio Blanquer, Francisco V. Brasileiro, Iana A. A. Rufino
A Science gateway for biodiversity and climate change research. e2834 - Atilla Özgür, Hamit Erdem:
The impact of using large training data set KDD99 on classification accuracy. e2838 - Christopher Mohr, Andreas Friedrich, David Wojnar, Erhan Kenar, Aydin Can Polatkan, Marius Cosmin Codrea, Stefan Czemmel, Oliver Kohlbacher, Sven Nahnsen:
qPortal - A science gateway for biomedical applications. e2839 - Richard Allen White III
ATLAS (Automatic Tool for Local Assembly Structures) - a comprehensive infrastructure for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data. e2843 - Ken Arroyo Ohori
Visualising higher-dimensional space-time and space-scale objects as projections to ℝ3. e2844 - Ian J. Taylor, Jarek Nabrzyski:
Towards a dashboard environment for repeating and reusing research. e2845 - Luis de la Garza, Fabian Aicheler, Oliver Kohlbacher:
From the desktop to the grid and cloud: conversion of KNIME workflows to WS-PGRADE. e2849 - Michael Mayo, Maisa Daoud:
Aesthetic local search of wind farm layouts. e2864 - Jacob M. Schreiber, William S. Noble
Finding the optimal bayesian network given a constraint graph. e2872 - Christopher J. Lortie
A review of R for Data Science: key elements and a critical analysis. e2873 - Andrew E. Webb, Thomas A. Walsh, Mary J. O'Connell:
VESPA: Very large-scale Evolutionary and Selective Pressure Analyses. e1895 - Markus J. Ankenbrand
AliTV-interactive visualization of whole genome comparisons. e2348 - Erwan Bocher, Olivier Ertz:
A redesign of OGC Symbology Encoding standard for sharing cartography. e2415
- Jürgen Cito, Gerald Schermann, Erik Wittern, Philipp Leitner, Sali Zumberi, Harald C. Gall
An empirical analysis of the Docker container ecosystem on GitHub. e2905 - Rory Mitchell, Eibe Frank:
Accelerating the XGBoost algorithm using GPU computing. e2911 - Hakan Ayral
Parallel and in-process compilation of individuals for genetic programming on GPU. e2936 - Yu Wu, Na Wang, Jessica Kropczynski, John M. Carroll:
The appropriation of GitHub for curation. e2952 - Brook G. Milligan:
Probabilistic graph models for landscape genetics. e2225 - Roberto Santos
Integrating GIScience and Crop Science datasets: a study involving genetic, geographic and environmental data. e2248
- Radhwan M. Abduallah, Zuriati Ahmad Zukarnain:
Vertical handoff algorithm for different wireless technologies. e2970 - Pascal Brokmeier:
Project level effects of gender on contribution evaluation on GitHub. e2989 - Shitij Bhargava, Tsung-Ting Kuo
bioPDFX: preparing PDF scientific articles for biomedical text mining. e2993 - Flávio Codeço Coelho
Secure trustless text processing of sensitive documents. e2994
- Ibrahim Ghafir, Mohammad Hammoudeh, Vaclav Prenosil:
Disguised executable files in spear-phishing emails: Detecting the point of entry in advanced persistent threat. e2998 - Stephanie R. Debats
Integrating active learning and crowdsourcing into large-scale supervised landcover mapping algorithms. e3004 - Jie Xie:
Multi-label classification of frog species via deep learning. e3007
- Silvio Peroni
Research Articles in Simplified HTML: a Web-first format for HTML-based scholarly articles. e2513 - Haydee Artaza
PIsCO: A Performance indicators framework for collection of bioinformatics resource metrics. e3112 - Leonardo Carvalho, Eduardo Bezerra, Gustavo Paiva Guedes, Laura Assis
A Mixed Graph Framework to evaluate the complementarity of communication Tools. e3114
- Eddie A. Santos
Finding and correcting syntax errors using recurrent neural networks. e3123 - Joseph Keenan St. Pierre:
A Simple Encryption Algorithm. e3128 - Pierre Monnin
PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units. e3140 - J. Frederico Carvalho
An algorithm for calculating top-dimensional bounding chains. e3151 - Jennifer Bryan
Excuse me, do you have a moment to talk about version control? e3159 - Benjamin S. Baumer
Lessons from between the white lines for isolated data scientists. e3160 - Amelia McNamara, Nicholas J. Horton
Wrangling categorical data in R. e3163 - Yongmei Zhai, Shenglong Chen
GIS-based seismic hazard prediction system for urban earthquake disaster prevention planning. e3165 - Zev Ross, Hadley Wickham, David Robinson:
Declutter your R workflow with tidy tools. e3180 - Mine Çetinkaya-Rundel
Infrastructure and tools for teaching computing throughout the statistical curriculum. e3181 - Ricardo Bion, Robert Chang, Jason Goodman:
How R helps Airbnb make the most of its data. e3182 - Dirk Eddelbuettel
Extending R with C++: A Brief Introduction to Rcpp. e3188 - Sean J. Taylor, Benjamin Letham:
Forecasting at Scale. e3190 - Jaderick P. Pabico:
Human-Borg dynamics during a cybernetic alien invasion. e3198 - Steven Wu, Luke Bornn:
Modeling offensive player movement in professional basketball. e3201 - Sankhanil Dey, Ranjan Ghosh:
Extended SAC: A review and new algorithms of differential cryptanalysis of 4-bit s-boxes and strict avalanche criterion of BFs and 4-bit s-boxes again with a new extension to HO-SAC criterion. e3202 - Lance A. Waller:
Documenting and evaluating Data Science contributions in academic promotion in Departments of Statistics and Biostatistics. e3204 - Daniel T. Kaplan:
Teaching stats for data science. e3205
- Yann H. Chemin
Assessment of spectral properties of Apollo 12 landing site. e2124 - Danila Vella
MTopGO: a tool for module identification in PPI Networks. e3229 - Carlo Maj, Elena Milanesi, Massimo Gennarelli, Luciano Milanesi
Epistasis analysis reveals associations between gene variants and bipolar disorder. e3242 - Kyle Chard
The Modern Research Data Portal: A design pattern for networked, data-intensive science. e3194 - Andrea Tangherloni, Simone Spolaor, Leonardo Rundo, Marco S. Nobile, Ivan Merelli, Paolo Cazzaniga, Daniela Besozzi, Giancarlo Mauri, Pietro Liò:
GenHap: A novel computational method based on genetic algorithms for haplotype assembly. e3246 - Sankhanil Dey, Ranjan Ghosh:
Linear Approximation Analysis: an improved technique for linear cryptanalysis of 4-bit Bijective Crypto S-Boxes. e3249 - Mikael Vejdemo-Johansson
Weighted growth functions of automatic groups. e3256 - Sankhanil Dey, Ranjan Ghosh:
Multiplication over Extended Galois Field: A New Approach to Find Monic Irreducible Polynomials over Galois Field GF(p^q). e3258 - Sankhanil Dey, Ranjan Ghosh:
Multiplication and Division over Extended Galois Field GF(p^q): A new Approach to find Monic Irreducible Polynomials over any Galois Field GF(p^q). e3259 - Alessandro Zandonà, Matilde Francescon, Maya Bronfeld, Andrea Calvo
A Dynamic Bayesian Network model for simulation of disease progression in Amyotrophic Lateral Sclerosis patients. e3262 - Mohammad Masudur Rahman
Improved query reformulation for concept location using CodeRank and document structures. e3186 - Raúl Amado Cattáneo, Luis Diambra
Phylogenomics of 42 tomato chloroplasts using assembly and alignment-free method. e3271 - Valentina Grasso
Weather events identification in social media streams: tools to detect their evidence in Twitter. e2241 - Alfonso Crisci
Summer Heat Risk Index: how to integrate recent climatic changes and soil consumption component. e2234 - Soumya Banerjee:
Lymph node inspired computing: towards holistic immune system inspired algorithms for human-engineered complex systems. e3150 - Lukasz Slugocki, Robert Czerniawski:
Impact of the catchment land use on some factors of lakes trophic status: a GIS approach. e2203 - Alicia Fernandez-Rovira, Rocio Lavado-Valenzuela, Miguel Ángel Guerrero-Martinez, Ismael Navas-Delgado, José Francisco Aldana Montes:
Melanoma expression analysis with Big Data technologies. e3260 - Pasquale Nino
Mapping irrigated areas using multi-sensor remote sensing data in a Mediterranean environment. e2155 - Sankhanil Dey, Ranjan Ghosh:
Crypto-Archaeology: unearthing design methodology of DES s-boxes. e3285 - Simone Sterlacchini
An Open source GIS-based tool for economic loss estimation due to flood events. e2228 - Danila Vella
Stability analysis of MTopGO for module identification in PPI networks. e3289 - Valentina Tibollo
Procedure to integrate i2b2 and REDCap: a case study at ICSM. e3294 - Giuseppe Agapito
GenotypeAnalytics: a RESTFul platform to mine multiple associations between SNPs and drug response in case-control studies. e3299 - Sankhanil Dey, Ranjan Ghosh:
4, 8, 32, 64 bit Substitution Box generation using Irreducible or Reducible Polynomials over Galois Field GF(pq). e3300
- Maureen Lyndel C. Lauron, Jaderick P. Pabico:
Profiling waitlisted incoming students for future delinquency with an ensemble of statistical machine learning algorithms. e3312 - Junade Ali:
Mechanism for the prevention of password reuse through Anonymized Hashes. e3322 - Silvana Iuliana Albert:
Visualizing mutation occurrence using Big Data. e3325 - Michela Quadrini, Luca Tesei, Emanuela Merelli:
An algebraic representation for tree alignment of RNA pseudoknotted structures. e3327 - Francesco Guarino
A novel shiny platform for the geo-spatial analysis of large amount of patient data. e3335 - Fabienne Lambusch, Dagmar Waltemath
Identifying frequent patterns in biochemical reaction networks - a workflow. e1479 - Francesco Versaci, Luca Pireddu
Distributed stream processing for genomics pipelines. e3338 - Onofre Orozco
Linear time-varying Luenberger observer applied to diabetes. e3341 - Arman Rahimzamani, Sreeram Kannan:
Potential conditional mutual information: Estimators and properties. e3345 - Fabio Fassetti
Automatic simulation of RNA editing in plants for the identification of novel putative Open Reading Frames. e3362 - Patrick D. C. Pereira, Cleyssian Dias
Seqs-Extractor: Automated sequences extraction to reduce tedious manual corrections of large datasets. e3364 - Soumya Banerjee:
A computational framework to find novel therapeutics for autoimmunity. e3217
- Udit Arora, Sohit Verma, Sarthak Sahni, Tushar Sharma:
Cricket umpire assistance and ball tracking system using a single smartphone camera. e3402 - Rohit Takhar, Tushar Sharma, Udit Arora, Sohit Verma:
Assistive guidance system for the visually impaired. e3410 - Roberto Vidmar, Nicola Creati:
QCOBJ a Python package to handle quantity-aware configuration files. e3418 - Sankhanil Dey, Ranjan Ghosh:
A review of existing 4-bit crypto S-box cryptanalysis techniques and two new techniques with 4-bit Boolean functions for cryptanalysis of 4-bit crypto S-boxes. e3441
- Daniel Alcaide
MCLEAN: Multilevel Clustering Exploration As Network. e3448 - Alexander Seitz, Friederike Hanssen, Kay Nieselt:
DACCOR - Detection, charACterization, and reconstruction of Repetitive regions in bacterial genomes. e3480
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