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Journal of Bioinformatics and Computational Biology, Volume 17
Volume 17, Number 1, February 2019
- Yuriy L. Orlov
, Ralf Hofestädt, Tatiana V. Tatarinova
Bioinformatics research at BGRS\SB-2018. 1902001:1-1902001:4
- Anastasiya V. Rudik
Metatox - Web application for generation of metabolic pathways and toxicity estimation. 1940001:1-1940001:14 - Alexey Penenko
Numerical algorithm for morphogen synthesis region identification with indirect image-type measurement data. 1940002:1-1940002:18 - Anna Sergeevna Batova, Aleksandr Nikolaevich Bugay, Ermuhammad Berdimurodovich Dushanov:
Effect of mutant NMDA receptors on the oscillations in a model of hippocampus. 1940003:1-1940003:15 - Natalia G. Novoselova:
Numerical constructions of optimal feedback in models of chemotherapy of a malignant tumor. 1940004:1-1940004:16
- Wei Zhang, Jia Xu, Yuanyuan Li, Xiufen Zou:
Integrating network topology, gene expression data and GO annotation information for protein complex prediction. 1950001:1-1950001:20 - Youming Lu, Lei Yuan, Xin Chen, Aijun Zhang, Pengqi Zhang, Dongdong Zou:
Systematic analysis and identification of unexpected interactions from the neuroprotein drug interactome in hydrocephalus pharmacological intervention. 1950002:1-1950002:16
- Anna V. Kudryavtseva
Bioinformatic identification of differentially expressed genes associated with prognosis of locally advanced lymph node-positive prostate cancer. 1950003:1-1950003:20
- Chun Fang, Yoshitaka Moriwaki
Identifying short disorder-to-order binding regions in disordered proteins with a deep convolutional neural network method. 1950004:1-1950004:16 - Nguyen-Quoc-Khanh Le
Using two-dimensional convolutional neural networks for identifying GTP binding sites in Rab proteins. 1950005:1-1950005:19
- Oxana V. Galzitskaya
Is there codon usage bias for poly-Q stretches in the human proteome? 1950010:1-1950010:10
Volume 17, Number 2, April 2019
- Ashish Runthala
Refined template selection and combination algorithm significantly improves template-based modeling accuracy. 1950006:1-1950006:21 - Farzad Peyravi, Alimohammad Latif
Protein tertiary structure prediction using hidden Markov model based on lattice. 1950007:1-1950007:21 - Sanjeev Kumar, Suneeta Agarwal, Ranvijay:
Fast and memory efficient approach for mapping NGS reads to a reference genome. 1950008:1-1950008:17 - Polina Zhornikova, Nina Golyandina
Noise model estimation with application to gene expression. 1950009:1-1950009:20 - Ali Cuvitoglu
Predicting drug synergy for precision medicine using network biology and machine learning. 1950012:1-1950012:20 - Yaxing Zhao, Andrew Chi-Hau Sue
Deeper investigation into the utility of functional class scoring in missing protein prediction from proteomics data. 1950013:1-1950013:17
Volume 17, Number 3, June 2019
- Yen-Wei Chu
Selected Papers from the International Workshop on Cancer Bioinformatics and Intelligent Medicine (CBIM2018). 1902002:1-1902002:2
- Chun-Yu Lin
Deep learning with evolutionary and genomic profiles for identifying cancer subtypes. 1940005:1-1940005:15 - Jung-Yu Lee, Si-Yu Lin, Chun-Yu Lin
Identification of the PCA29 gene signature as a predictor in prostate cancer. 1940006:1-1940006:12 - Teppei Matsubara, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu
Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles. 1940007:1-1940007:11 - Yoshiaki Sota
Improvement of detection performance of fusion genes from RNA-seq data by clustering short reads. 1940008:1-1940008:12
- Daniel Inostroza, Cecilia Hernández
Cell cycle and protein complex dynamics in discovering signaling pathways. 1950011:1-1950011:21 - Rumen Andonov
Complete assembly of circular and chloroplast genomes based on global optimization. 1950014:1-1950014:23 - Matthew Stephenson
DSRIG: Incorporating graphical structure in the regularized modeling of SNP data. 1950017:1-1950017:15 - Jamshid Pirgazi, Ali Reza Khanteymoori, Maryam Jalilkhani:
TIGRNCRN: Trustful inference of gene regulatory network using clustering and refining the network. 1950018:1-1950018:26 - Rishika Sen
PyPredT6: A python-based prediction tool for identification of Type VI effector proteins. 1950019:1-1950019:18
Volume 17, Number 4, August 2019
- Shuhei Kimura
Inference of genetic networks using random forests: Assigning different weights for gene expression data. 1950015:1-1950015:21 - P. V. Sunil Kumar
Inferring disease and pathway associations of long non-coding RNAs using heterogeneous information network model. 1950020:1-1950020:18 - Qiang Yu, Xiang Zhao, Hongwei Huo
A new algorithm for DNA motif discovery using multiple sample sequence sets. 1950021:1-1950021:19 - Huiqing Wang, Chun Li, Jianhui Zhang, Jingjing Wang, Yue Ma, Yuanyuan Lian:
A new LSTM-based gene expression prediction model: L-GEPM. 1950022:1-1950022:19 - Luowen Liu
A sparse and decomposed particle swarm optimization for inferring gene regulatory networks based on fuzzy cognitive maps. 1950023:1-1950023:25 - Ting-Hua Huang, Xiali Huang, Bomei Shi, Min Yao
GEREDB: Gene expression regulation database curated by mining abstracts from literature. 1950024:1-1950024:12 - Sovan Saha
Protein function prediction from dynamic protein interaction network using gene expression data. 1950025:1-1950025:15 - Natalia Rubanova
Centrality and the shortest path approach in the human interactome. 1950027:1-1950027:13 - Md. Ashad Alam
Robust kernel canonical correlation analysis to detect gene-gene co-associations: A case study in genetics. 1950028:1-1950028:23 - Fang Yuan, Gan Liu, Xiwen Yang, Shunfang Wang
Prediction of oxidoreductase subfamily classes based on RFE-SND-CC-PSSM and machine learning methods. 1950029:1-1950029:25
Volume 17, Number 5, October 2019
- Elisabetta De Maria:
Introduction to JBCB Special Issue on BIOINFORMATICS 2019. 1902003:1-1902003:2
- Rick Gelhausen
IntaRNAhelix-composing RNA-RNA interactions from stable inter-molecular helices boosts bacterial sRNA target prediction. 1940009:1-1940009:16 - Farhad Maleki
Measuring consistency among gene set analysis methods: A systematic study. 1940010:1-1940010:18 - Yoshihiro Shibuya, Matteo Comin
Indexing k-mers in linear space for quality value compression. 1940011:1-1940011:15
- Pietro Bongini
Glycine-induced formation and druggability score prediction of protein surface pockets. 1950026:1-1950026:18 - Qiangrong Jiang, Guang Qiu
Graph kernels combined with the neural network on protein classification. 1950030:1-1950030:11 - Abdelhakim El Fatmi
RNAknot: A new algorithm for RNA secondary structure prediction based on genetic algorithm and GRASP method. 1950031:1-1950031:19 - Ting-Hua Huang, Xiali Huang, Min Yao
Min3: Predict microRNA target gene using an improved binding-site representation method and support vector machine. 1950032:1-1950032:19 - Vishan Kumar Gupta
Toxicity prediction of small drug molecules of androgen receptor using multilevel ensemble model. 1950033:1-1950033:26
Volume 17, Number 6, December 2019
- Qin Ding, Oliver Eulenstein, Hisham Al-Mubaid
Foreword: Special Issue for the 2019 International Conference on Bioinformatics and Computational Biology (BICOB-2019). 1902004:1-1902004:2
- Yuan Liu
An enrichment method for mapping ambiguous reads to the reference genome for NGS analysis. 1940012:1-1940012:13 - Ahmed Bin Zaman, Amarda Shehu:
Building maps of protein structure spaces in template-free protein structure prediction. 1940013:1-1940013:17 - Kazi Lutful Kabir, Nasrin Akhter, Amarda Shehu:
From molecular energy landscapes to equilibrium dynamics via landscape analysis and markov state models. 1940014:1-1940014:21 - Chun Fang, Yoshitaka Moriwaki, Caihong Li, Kentaro Shimizu:
MoRFPred_en: Sequence-based prediction of MoRFs using an ensemble learning strategy. 1940015:1-1940015:15
- Abolfazl Bahrami
PSSP: Protein splice site prediction algorithm using Bayesian approach. 1950034:1-1950034:18 - Huiqing Wang, Yuanyuan Lian
SIN-KNO: A method of gene regulatory network inference using single-cell transcription and gene knockout data. 1950035:1-1950035:28 - Tatsuya Sekiguchi
WinBEST-KIT: Biochemical reaction simulator that can define and customize algebraic equations and events as GUI components. 1950036:1-1950036:22 - Lei Gao
AUSPP: A universal short-read pre-processing package. 1950037:1-1950037:11 - Peng Li
Integration of multi-omics data to mine cancer-related gene modules. 1950038:1-1950038:24 - Bifang He, Jian Huang
PVsiRNAPred: Prediction of plant exclusive virus-derived small interfering RNAs by deep convolutional neural network. 1950039:1-1950039:11
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