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Frontiers in Neuroinformatics, Volume 10
Volume 10, 2016
- Helena T. Glabska, Eivind S. Norheim, Anna Devor
, Anders M. Dale, Gaute T. Einevoll, Daniel K. Wójcik
Generalized Laminar Population Analysis (gLPA) for Interpretation of Multielectrode Data from Cortex. 1 - Mary K. Askren, Trevor K. McAllister-Day
Using Make for Reproducible and Parallel Neuroimaging Workflow and Quality-Assurance. 2 - Makoto Takemiya, Kei Majima
BrainLiner: A Neuroinformatics Platform for Sharing Time-Aligned Brain-Behavior Data. 3 - Oscar Esteban
Diffantom: Whole-Brain Diffusion MRI Phantoms Derived from Real Datasets of the Human Connectome Project. 4 - Dimitris Sakellariou
Connectivity Measures in EEG Microstructural Sleep Elements. 5 - Alexander Dubbs, James Guevara, Rafael Yuste:
moco: Fast Motion Correction for Calcium Imaging. 6 - Nima Bigdely Shamlo, Scott Makeig, Kay A. Robbins:
Preparing Laboratory and Real-World EEG Data for Large-Scale Analysis: A Containerized Approach. 7 - Benjamin D. Evans
PyRhO: A Multiscale Optogenetics Simulation Platform. 8 - Sandeep R. Panta
A Tool for Interactive Data Visualization: Application to Over 10, 000 Brain Imaging and Phantom MRI Data Sets. 9 - Marco Ganzetti, Nicole Wenderoth, Dante Mantini
Intensity Inhomogeneity Correction of Structural MR Images: A Data-Driven Approach to Define Input Algorithm Parameters. 10 - Eszter A. Papp
Brain-Wide Mapping of Axonal Connections: Workflow for Automated Detection and Spatial Analysis of Labeling in Microscopic Sections. 11 - Richard Beare
Neonatal Brain Tissue Classification with Morphological Adaptation and Unified Segmentation. 12 - Vito Paolo Pastore
ToolConnect: A Functional Connectivity Toolbox for In vitro Networks. 13 - Sejal Patel, Min Tae M. Park
Gene Prioritization for Imaging Genetics Studies Using Gene Ontology and a Stratified False Discovery Rate Approach. 14 - Yinghua Wang, Jiaqing Yan, Jianbin Wen
An Intracranial Electroencephalography (iEEG) Brain Function Mapping Tool with an Application to Epilepsy Surgery Evaluation. 15 - Dmitrii I. Sukhinin, Andreas K. Engel
Building the Ferretome. 16 - Werner Van Geit
BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience. 17 - Satya S. Sahoo
NeuroPigPen: A Scalable Toolkit for Processing Electrophysiological Signal Data in Neuroscience Applications Using Apache Pig. 18 - Nicoletta Nicolaou
A Nonlinear Causality Estimator Based on Non-Parametric Multiplicative Regression. 19 - Sulantha Mathotaarachchi, Seqian Wang, Monica Shin, Tharick A. Pascoal
VoxelStats: A MATLAB Package for Multi-Modal Voxel-Wise Brain Image Analysis. 20 - Zhao Feng, Anan Li, Hui Gong, Qingming Luo
An Automatic Method for Nucleus Boundary Segmentation Based on a Closed Cubic Spline. 21 - Luz María Alonso-Valerdi
Python Executable Script for Estimating Two Effective Parameters to Individualize Brain-Computer Interfaces: Individual Alpha Frequency and Neurophysiological Predictor. 22 - Carmen Alina Lupascu, Annunziato Morabito, Elisabetta Merenda
A General Procedure to Study Subcellular Models of Transsynaptic Signaling at Inhibitory Synapses. 23 - Ruth Pauli, Alexander Bowring
Exploring fMRI Results Space: 31 Variants of an fMRI Analysis in AFNI, FSL, and SPM. 24 - Haiyong Wu, Geng Chen, Yan Jin
Embarrassingly Parallel Acceleration of Global Tractography via Dynamic Domain Partitioning. 25 - Lyuba Zehl
Handling Metadata in a Neurophysiology Laboratory. 26 - Nikolaas N. Oosterhof
CoSMoMVPA: Multi-Modal Multivariate Pattern Analysis of Neuroimaging Data in Matlab/GNU Octave. 27 - William Grisham, Barbara Lom, Linda J. Lanyon
Proposed Training to Meet Challenges of Large-Scale Data in Neuroscience. 28 - Jessica L. Forbes, Regina E. Y. Kim
An Open-Source Label Atlas Correction Tool and Preliminary Results on Huntingtons Disease Whole-Brain MRI Atlases. 29 - José V. Manjón, Pierrick Coupé
volBrain: An Online MRI Brain Volumetry System. 30 - Philipp Weidel, Mikael Djurfeldt, Renato C. Duarte
Closed Loop Interactions between Spiking Neural Network and Robotic Simulators Based on MUSIC and ROS. 31 - Antonio Ulloa
Embedding Task-Based Neural Models into a Connectome-Based Model of the Cerebral Cortex. 32 - Eloy Roura, Nicolae Sarbu
Automated Detection of Lupus White Matter Lesions in MRI. 33 - Leah B. Honor
Data Citation in Neuroimaging: Proposed Best Practices for Data Identification and Attribution. 34 - Robert D. Vincent, Peter Neelin, Najmeh Khalili-Mahani
MINC 2.0: A Flexible Format for Multi-Modal Images. 35 - Diego A. Angulo, Cyril Schneider
A Multi-facetted Visual Analytics Tool for Exploratory Analysis of Human Brain and Function Datasets. 36 - Aldo Zaimi, Tanguy Duval, Alicja Gasecka, Daniel Côté, Nikola Stikov
AxonSeg: Open Source Software for Axon and Myelin Segmentation and Morphometric Analysis. 37 - Robert Meyer, Klaus Obermayer:
pypet: A Python Toolkit for Data Management of Parameter Explorations. 38 - Erinç Gökdeniz, Arzucan Özgür, Resit Canbeyli:
Automated Neuroanatomical Relation Extraction: A Linguistically Motivated Approach with a PVT Connectivity Graph Case Study. 39 - Gonzalo M. Rojas
Mobile Device Applications for the Visualization of Functional Connectivity Networks and EEG Electrodes: iBraiN and iBraiNEEG. 40 - Angel Lareo, Caroline G. Forlim
Temporal Code-Driven Stimulation: Definition and Application to Electric Fish Signaling. 41 - Nima Bigdely Shamlo, Jeremy Cockfield, Scott Makeig, Thomas Rognon, Chris La Valle, Makoto Miyakoshi
Hierarchical Event Descriptors (HED): Semi-Structured Tagging for Real-World Events in Large-Scale EEG. 42 - Leah B. Honor, Christian Haselgrove
Corrigendum: Data Citation in Neuroimaging: Proposed Best Practices for Data Identification and Attribution. 43 - Sergio E. Galindo, Pablo Toharia
ViSimpl: Multi-View Visual Analysis of Brain Simulation Data. 44 - Kathleen M. Gates, Teague Rhine Henry, Doug Steinley, Damien A. Fair:
A Monte Carlo Evaluation of Weighted Community Detection Algorithms. 45 - Kamal Shadi, Saeideh Bakhshi, David A. Gutman, Helen S. Mayberg, Constantine Dovrolis:
A Symmetry-Based Method to Infer Structural Brain Networks from Probabilistic Tractography Data. 46 - Jian Zhang
New Insights into Signed Path Coefficient Granger Causality Analysis. 47 - Oliver Rübel, Max Dougherty
Methods for Specifying Scientific Data Standards and Modeling Relationships with Applications to Neuroscience. 48 - Natalia Y. Bilenko, Jack L. Gallant:
Pyrcca: Regularized Kernel Canonical Correlation Analysis in Python and Its Applications to Neuroimaging. 49 - Kristian Loewe
Memory-Efficient Analysis of Dense Functional Connectomes. 50 - Marieke Musegaas, Bas J. Dietzenbacher
On Shapley Ratings in Brain Networks. 51 - Ricardo Pizarro
Automated Quality Assessment of Structural Magnetic Resonance Brain Images Based on a Supervised Machine Learning Algorithm. 52 - Samir Das, Tristan Glatard, Christine Rogers, John Saigle, Santiago Paiva, Leigh C. MacIntyre, Mouna Safi-Harb, Marc-Etienne Rousseau
Cyberinfrastructure for Open Science at the Montreal Neurological Institute. 53
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