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Computers in Biology and Medicine, Volume 42
Volume 42, Number 1, January 2012
- Xiaofeng Song, Lei Cheng, Tao Zhou
, Xuejiang Guo
Predicting miRNA-mediated gene silencing mode based on miRNA-target duplex features. 1-7 - Quansheng Xu, Kangning Xie
A statistical study of the factors influencing the extent of respiratory motion blur in PET imaging. 8-18 - Emmanouil G. Sifakis
Evaluating the effect of various background correction methods regarding noise reduction, in two-channel microarray data. 19-29 - Hu Huang
Ant colony optimization-based feature selection method for surface electromyography signals classification. 30-38 - Pejman Farhadi Ghalati
Numerical analysis of micro- and nano-particle deposition in a realistic human upper airway. 39-49 - Elahe Moghimirad, Seyed Hamid Rezatofighi, Hamid Soltanian-Zadeh
Retinal vessel segmentation using a multi-scale medialness function. 50-60 - George Tzanis, Christos Berberidis, Ioannis P. Vlahavas
StackTIS: A stacked generalization approach for effective prediction of translation initiation sites. 61-69 - Kaushik Kumar Majumdar:
Differential operator in seizure detection. 70-74 - Pelin Kus, Irfan Karagoz:
Fully automated gradient based breast boundary detection for digitized X-ray mammograms. 75-82 - Saurabh Pal
Empirical mode decomposition based ECG enhancement and QRS detection. 83-92 - Shih-Yen Ku, Yuh-Jyh Hu:
Structural alphabet motif discovery and a structural motif database. 93-105 - Siripit Pitchuanchom, Chantana Boonyarat
Cyclin-dependent kinases 5 template: Useful for virtual screening. 106-111 - Yin-Fu Huang, Ching-Ping Liang, Sing-Wu Liou:
Intron identification approaches based on weighted features and fuzzy decision trees. 112-122 - Mohamed Meselhy Eltoukhy, Ibrahima Faye
A statistical based feature extraction method for breast cancer diagnosis in digital mammogram using multiresolution representation. 123-128 - John L. Sfondouris, Tabitha M. Quebedeaux, Chris Holdgraf, Alberto E. Musto:
Combined process automation for large-scale EEG analysis. 129-134 - João Dallyson Sousa de Almeida
Computational methodology for automatic detection of strabismus in digital images through Hirschberg test. 135-146
Volume 42, Number 2, February 2012
- Diego Alexander Garzón-Alvarado
Modeling porous scaffold microstructure by a reaction-diffusion system and its degradation by hydrolysis. 147-155 - M. V. K. Karthik, M. V. K. N. Satya Deepak, Pratyoosh Shukla
Explication of interactions between HMGCR isoform 2 and various statins through In silico modeling and docking. 156-163 - Eduardo Miranda Dantas, Marcela Lima Sant'Anna, Rodrigo Varejão Andreão
Spectral analysis of heart rate variability with the autoregressive method: What model order to choose? 164-170 - Sergey Vaisman, Shimrit Yaniv Salem, Gershon Holcberg, Amir B. Geva:
Passive fetal monitoring by adaptive wavelet denoising method. 171-179 - Ru-Ping Liang, Shu-Yun Huang, Shao-Ping Shi
A novel algorithm combining support vector machine with the discrete wavelet transform for the prediction of protein subcellular localization. 180-187 - Cristóbal Fresno, Andrea S. Llera
The multi-reference contrast method: Facilitating set enrichment analysis. 188-194 - Themis P. Exarchos, Alexandros T. Tzallas
Using partial decision trees to predict Parkinson's symptoms: A new approach for diagnosis and therapy in patients suffering from Parkinson's disease. 195-204 - Nami K. Takano, Takeshi Tsutsumi, Hiroshi Suzuki, Yoshiwo Okamoto, Toshiaki Nakajima:
Time frequency power profile of QRS complex obtained with wavelet transform in spontaneously hypertensive rats. 205-212 - You-Shyang Chen, Ching-Hsue Cheng
Identifying patients in target customer segments using a two-stage clustering-classification approach: A hospital-based assessment. 213-221 - Fatemeh Dorri, Paeiz Azmi, Faezeh Dorri:
Missing value imputation in DNA microarrays based on conjugate gradient method. 222-227 - Chaang-Ray Chen
THEME: A web tool for loop-design microarray data analysis. 228-234 - Giacomo Veneri
Evaluating gaze control on a multi-target sequencing task: The distribution of fixations is evidence of exploration optimisation. 235-244 - Federico Divina
An effective measure for assessing the quality of biclusters. 245-256 - Carlos Fernando Crispim Junior, Cesar Nonato Pederiva, Ricardo Chessini Bose, Vitor Augusto Garcia, Cilene Lino-de-Oliveira
ETHOWATCHER: validation of a tool for behavioral and video-tracking analysis in laboratory animals. 257-264
Volume 42, Number 3, March 2012
- Niels Wessel
Computing complexity in cardiovascular oscillations: Selected papers from the 6th Conference of the ESGCO. 265-266
- Teodor Buchner
Complex activity patterns in arterial wall: Results from a model of calcium dynamics. 267-275 - Adriane B. Schelin, György Károlyi
Are the fractal skeletons the explanation for the narrowing of arteries due to cell trapping in a disturbed blood flow? 276-281 - Federico Aletti, Rebecca Re
Deep and surface hemodynamic signal from functional time resolved transcranial near infrared spectroscopy compared to skin flowmotion. 282-289
- Luca Faes
Non-uniform multivariate embedding to assess the information transfer in cardiovascular and cardiorespiratory variability series. 290-297 - Alberto Porta
Model-based assessment of baroreflex and cardiopulmonary couplings during graded head-up tilt. 298-305 - Tito Bassani
Testing the involvement of baroreflex during general anesthesia through Granger causality approach. 306-312
- Dirk Cysarz
Binary symbolic dynamics classifies heart rate variability patterns linked to autonomic modulations. 313-318 - Ulrich Parlitz, Sebastian Berg, Stefan Luther, Alexander Schirdewan, Jürgen Kurths, Niels Wessel
Classifying cardiac biosignals using ordinal pattern statistics and symbolic dynamics. 319-327 - Thomas Penzel
Effect of CPAP therapy on daytime cardiovascular regulations in patients with obstructive sleep apnea. 328-334
- Dirk Hoyer, Samuel Nowack, Stephan Bauer, Florian Tetschke, Stefan Ludwig, Liviu Moraru, Anja Rudoph, Ulrike Wallwitz, Franziska Jaenicke, Jens Haueisen
Fetal development assessed by heart rate patterns - Time scales of complex autonomic control. 335-341 - Peter Van Leeuwen
Automatic identification of fetal breathing movements in fetal RR interval time series. 342-346 - Mathias Baumert
Multiscale entropy and detrended fluctuation analysis of QT interval and heart rate variability during normal pregnancy. 347-352
Volume 42, Number 4, April 2012
- Bian Wu, Fan Yang, Ji-cai Zhang, Yiwen Wang, Xiaoxiang Zheng, Weidong Chen:
A frequency-temporal-spatial method for motor-related electroencephalography pattern recognition by comprehensive feature optimization. 353-363 - Manuel Chica
Real-time recognition of patient intentions from sequences of pressure maps using artificial neural networks. 364-375 - Konstantinos Sidiropoulos
Real time decision support system for diagnosis of rare cancers, trained in parallel, on a graphics processing unit. 376-386 - Hyonyoung Han, Jung Kim:
Artifacts in wearable photoplethysmographs during daily life motions and their reduction with least mean square based active noise cancellation method. 387-393 - Gleb V. Tcheslavski, Fahrettin Firat Gonen:
Alcoholism-related alterations in spectrum, coherence, and phase synchrony of topical electroencephalogram. 394-401 - Yuehui Chen, Jingru Xu, Bin Yang, Yaou Zhao, Wenxing He:
A novel method for prediction of protein interaction sites based on integrated RBF neural networks. 402-407 - Xuan Zhou, Zhanchao Li
Prediction of methylation CpGs and their methylation degrees in human DNA sequences. 408-413 - Sako Mirzaie
Prediction of the mode of interaction between monoterpenes and the nitroreductase from Enterobacter cloacae by docking simulation. 414-421 - Kwanguk Kim, Daeyoung Roh
Provoked arrangement symptoms in obsessive-compulsive disorder using a virtual environment: A preliminary report. 422-427 - Junpeng Zhang
Inferring functional miRNA-mRNA regulatory modules in epithelial-mesenchymal transition with a probabilistic topic model. 428-437 - Ramon Clèries, Jordi Galvez, Meritxell Espino
BootstRatio: A web-based statistical analysis of fold-change in qPCR and RT-qPCR data using resampling methods. 438-445 - P. Ajay Babu, Viswa Teja S. S. Colluru, Naishitha Anaparthy:
In-silico characterization of ECE-1 inhibitors. 446-457 - Hsu-Chih Huang, Ming-Shaung Ju
A robust algorithm for removing artifacts in EEG recorded during FMRI/EEG study. 458-467 - Jaegyoon Ahn, Youngmi Yoon, Chihyun Park, Sanghyun Park:
CNV detection method optimized for high-resolution arrayCGH by normality test. 468-473 - Luiz Cláudio Demes da Mata Sousa, Pedro de Alcântara dos Santos Neto, Fernando da Fonseca de Souza
LabSystem Gen, a tool for structuring and analyzing genetic data in histocompatibility laboratories. 474-479 - Tao Liu, Lingli Han, Zhangyu Yu, Dongju Zhang, Chengbu Liu:
Theoretical and experimental study on the molecular recognition of adrenaline by supramolecular complexation with crown ethers. 480-484 - Saeed Shakibfar
Assessing common classification methods for the identification of abnormal repolarization using indicators of T-wave morphology and QT interval. 485-491 - Matthew D. Sinnott, Paul W. Cleary
Investigating the relationships between peristaltic contraction and fluid transport in the human colon using Smoothed Particle Hydrodynamics. 492-503 - Wei Chen
Identification of voltage-gated potassium channel subfamilies from sequence information using support vector machine. 504-507
Volume 42, Number 5, May 2012
- André G. R. Balan, Agma J. M. Traina, Marcela X. Ribeiro, Paulo Mazzoncini de Azevedo Marques
Smart histogram analysis applied to the skull-stripping problem in T1-weighted MRI. 509-522 - Myung-Eun Lee
Segmentation of interest region in medical volume images using geometric deformable model. 523-537 - Luis Guimarães, Natália F. Silva, Anderson Miyoshi, Maria P. C. Schneider, Artur Silva
Structure modeling of a metalloendopeptidase from Corynebacterium pseudotuberculosis. 538-541 - Subhasish Saha
Preclinical evaluation and molecular docking of 4-phenyl-1-Napthyl phenyl acetamide (4P1NPA) from Streptomyces sp. DPTB16 as a potent antifungal compound. 542-547 - Eleonora Atzeni, Luca Iuliano
Proposal of an innovative benchmark for accuracy evaluation of dental crown manufacturing. 548-555 - Zhao-Hui Qi, Jun Feng, Xiao-Qin Qi, Ling Li:
Application of 2D graphic representation of protein sequence based on Huffman tree method. 556-563 - Jingyan Wang, Yongping Li, Quanquan Wang, Xinge You, Jiaju Man, Chao Wang, Xin Gao
ProClusEnsem: Predicting membrane protein types by fusing different modes of pseudo amino acid composition. 564-574 - Robert Salat
New approach to predicting proconvulsant activity with the use of Support Vector Regression. 575-581 - Jin-Xing Liu, Chun-Hou Zheng, Yong Xu:
Extracting plants core genes responding to abiotic stresses by penalized matrix decomposition. 582-589 - Golnaz Baghdadi
Comparison of different EEG features in estimation of hypnosis susceptibility level. 590-597 - Bashar Awwad Shiekh Hasan, John Q. Gan
Hangman BCI: An unsupervised adaptive self-paced Brain-Computer Interface for playing games. 598-606 - Sjur Urdson Gjerald, Reidar Brekken
Interactive development of a CT-based tissue model for ultrasound simulation. 607-613 - Joan Climent, Roberto A. Hexsel:
Particle filtering in the Hough space for instrument tracking. 614-623 - Xue Xiao, Dongguo Li, Lei Gao, Xia Li, Qianghu Wang, Shaojun Zhang, Zhicheng Liu:
Screening for cancer associated MiRNAs through co-gene, co-function and co-pathway analysis. 624-630 - Esmail M. Saber
Flow patterns and deposition fraction of particles in the range of 0.1-10 μm at trachea and the first third generations under different breathing conditions. 631-638
Volume 42, Number 6, June 2012
- José M. Urquiza, Ignacio Rojas
Using machine learning techniques and genomic/proteomic information from known databases for defining relevant features for PPI classification. 639-650 - Ziye Yan
Super resolution SPECT reconstruction with non-uniform attenuation. 651-656 - Supriya D. Beedkar, C. N. Khobragade, Ragini G. Bodade
Comparative structural modeling and docking studies of uricase: Possible implication in enzyme supplementation therapy for hyperuricemic disorders. 657-666 - Aleksandar Boskovic
Unbiased entropy estimates in stress: A parameter study. 667-679 - Tai Nguyen-Ky, Peng Wen
Measuring the hypnotic depth of anaesthesia based on the EEG signal using combined wavelet transform, eigenvector and normalisation techniques. 680-691 - Sandrine de Ribaupierre
Construction of a 3-D anatomical model for teaching temporal lobectomy. 692-696 - Syam B. Nair
Computational identification of novel histone deacetylase inhibitors by docking based QSAR. 697-705 - Yinhui Deng, Yuanyuan Wang, Ping Chen, Jinhua Yu:
A hierarchical model for automatic nuchal translucency detection from ultrasound images. 706-713 - Yueyang Teng, Tie Zhang:
Three penalized EM-type algorithms for PET image reconstruction. 714-723
Volume 42, Number 7, July 2012
- Aravind Kailas, Chia-Chin Chong, Fujio Watanabe:
Simple statistical inference algorithms for task-dependent wellness assessment. 725-734 - Joselene Marques, Rabia Granlund, Martin Lillholm, Paola Pettersen, Erik B. Dam:
Automatic analysis of trabecular bone structure from knee MRI. 735-742 - Seyed Morteza Hosseini
Medical ultrasound image compression using contextual vector quantization. 743-750 - Yuwen Sun, Allen C. Cheng:
Machine learning on-a-chip: A high-performance low-power reusable neuron architecture for artificial neural networks in ECG classifications. 751-757 - Trilce Estrada
A scalable and accurate method for classifying protein-ligand binding geometries using a MapReduce approach. 758-771 - Hüseyin Demirel
Prediction of the brain temperature from other body temperatures in hypothermia induced rats by using artificial neural networks. 772-777 - Pietro Amedeo Modesti
The impact of fine-tuning of optical recognition system on database reliability. 778-783
Volume 42, Number 8, August 2012
- Di Zhang, Jiazhong He, Jianping Yao, Yuequan Wu, Minghui Du:
Noninvasive detection of mechanical prosthetic heart valve disorder. 785-792 - Femke De Backere
Towards automated generation and execution of clinical guidelines: Engine design and implementation through the ICU Modified Schofield use case. 793-805 - Abdulhamit Subasi
Medical decision support system for diagnosis of neuromuscular disorders using DWT and fuzzy support vector machines. 806-815 - Sung-Nien Yu
Bispectral analysis and genetic algorithm for congestive heart failure recognition based on heart rate variability. 816-825 - You-Shyang Chen, Ching-Hsue Cheng
Identifying the medical practice after total hip arthroplasty using an integrated hybrid approach. 826-840 - Kiwan Han, In-Young Kim, Jae-Jin Kim
Assessment of cognitive flexibility in real life using virtual reality: A comparison of healthy individuals and schizophrenia patients. 841-847 - (Withdrawn) A novel real-time patient-specific seizure diagnosis algorithm based on analysis of EEG and ECG signals using spectral and spatial features and improved particle swarm optimization classifier. 848-856
- Karthik Seetharaman, Hamidreza Namazi, Vladimir V. Kulish:
Phase lagging model of brain response to external stimuli - modeling of single action potential. 857-862 - Seyed Saeid Khalafvand, E. Y. K. Ng
Fluid-dynamics modelling of the human left ventricle with dynamic mesh for normal and myocardial infarction: Preliminary study. 863-870
Volume 42, Number 9, September 2012
- R. P. Channing Rodgers:
In Memoriam, Robert Stevens Ledley (1926-2012). 871 - Lun-chien Lo
Pseudo three-dimensional vision-based nail-fold morphological and hemodynamic analysis. 873-884 - Watshara Shoombuatong
HIV-1 CRF01_AE coreceptor usage prediction using kernel methods based logistic model trees. 885-889 - Bastikar Virupaksha
CoMFA QSAR models of camptothecin analogues based on the distinctive SAR features of combined ABC, CD and E ring substitutions. 890-897 - Malar Elangeeran
A novel approach for detection and classification of mammographic microcalcifications using wavelet analysis and extreme learning machine. 898-905 - Lian Gao, Yufeng Zhang, Kexin Zhang, Guanghui Cai, Junhua Zhang, Xinling Shi:
A computer simulation model for Doppler ultrasound signals from pulsatile blood flow in stenosed vessels. 906-914 - Juliana H. K. Kim, Mark L. Trew, Andrew J. Pullan, Oliver Röhrle
Simulating a dual-array electrode configuration to investigate the influence of skeletal muscle fatigue following functional electrical stimulation. 915-924 - Debi Prosad Dogra, Arun K. Majumdar, Shamik Sural
Analysis of adductors angle measurement in Hammersmith infant neurological examinations using mean shift segmentation and feature point based object tracking. 925-934 - Jian-Jun Shu, Yajing Li:
A statistical fat-tail test of predicting regulatory regions in the Drosophila genome. 935-941
Volume 42, Number 10, October 2012
- Maria Gabriella Tana, Roberta Sclocco
GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data. 943-956 - Gongfa Chen, Wei Fan, Sanjay Mishra, Adam El-Atem, Michael A. Schuetz
Tooth fracture risk analysis based on a new finite element dental structure models using micro-CT data. 957-963 - Zoe Falomir
Automation of Food Questionnaires in Medical Studies: A state-of-the-art review and future prospects. 964-974 - Zhao-Hui Qi, Ming-Hui Du, Xiao-Qin Qi, Li-Juan Zheng:
Gene comparison based on the repetition of single-nucleotide structure patterns. 975-981 - Benjamin Bhattacharya-Ghosh, Silvia Schievano
A multi-physics and multi-scale lumped parameter model of cardiac contraction of the left ventricle: A conceptual model from the protein to the organ scale. 982-992 - Ignacio Larrabide, Pablo J. Blanco
HeMoLab - Hemodynamics Modelling Laboratory: An application for modelling the human cardiovascular system. 993-1004 - Yuh-Jyh Hu, Tien-Hsiung Ku:
Pattern discovery from patient controlled analgesia demand behavior. 1005-1011 - Santa Di Cataldo
Computer-aided techniques for chromogenic immunohistochemistry: Status and directions. 1012-1025 - Rohit Dutt, A. K. Madan:
Predicting biological activity: Computational approach using novel distance based molecular descriptors. 1026-1041
Volume 42, Number 11, November 2012
- Yang-Ming Zhu
Volume sweeping and bodyline matching for automated prealignment in volumetric medical image registration. 1043-1052 - Xia Wang, Gang Mi, Cuicui Wang, Yongqing Zhang, Juan Li, Yanzhi Guo, Xuemei Pu, Menglong Li:
Prediction of flavin mono-nucleotide binding sites using modified PSSM profile and ensemble support vector machine. 1053-1059 - Gideon Praveen Kumar, Lazar Mathew:
Self-expanding aortic valve stent - Material optimization. 1060-1063 - Eleni Ch. Georgiadi, Dimitra D. Dionysiou
Towards in silico oncology: Adapting a four dimensional nephroblastoma treatment model to a clinical trial case based on multi-method sensitivity analysis. 1064-1078 - Younes Ghasemi
The possible role of HSPs on Behçet's disease: A bioinformatic approach. 1079-1085 - Florian Andreas Probst, A. P. Litzenburger, M. J. Richter, Albert C. Mehl
Similarity measure for quality control of dental CAD/CAM-applications. 1086-1090 - Valerio Freschi, Alessandro Bogliolo
Genome-wide computational approach for the prediction of duplications generating protein localization signals. 1091-1097 - Donato Cascio
Automatic detection of lung nodules in CT datasets based on stable 3D mass-spring models. 1098-1109 - Stelmo Magalhães Barros Netto, Aristófanes Corrêa Silva
Automatic segmentation of lung nodules with growing neural gas and support vector machine. 1110-1121 - Joubin Nasehi Tehrani, Tong In Oh, Craig T. Jin
Evaluation of different stimulation and measurement patterns based on internal electrode: Application in cardiac impedance tomography. 1122-1132 - Mahendra Kumar Prajapat
Interplay between Fur and HNS in controlling virulence gene expression in Salmonella typhimurium. 1133-1140 - Megha Agrawal, Mugdha Gadgil:
Meta analysis of gene expression changes upon treatment of A549 cells with anti-cancer drugs to identify universal responses. 1141-1149 - Fleur T. Tehrani:
A closed-loop system for control of the fraction of inspired oxygen and the positive end-expiratory pressure in mechanical ventilation. 1150-1156
Volume 42, Number 12, December 2012
- Yongjun Chang, Namkug Kim
Fast and efficient lung disease classification using hierarchical one-against-all support vector machine and cost-sensitive feature selection. 1157-1164 - N. M. Shakya, Robert W. LeAnder, K. A. Hinton, S. M. Stricklin, Ryan K. Rader
Discrimination of squamous cell carcinoma in situ from seborrheic keratosis by color analysis techniques requires information from scale, scale-crust and surrounding areas in dermoscopy images. 1165-1169 - Marisol Martinez-Escobar, Jung-Leng Foo, Eliot H. Winer:
Colorization of CT images to improve tissue contrast for tumor segmentation. 1170-1178 - María J. Lado
Nocturnal evolution of heart rate variability indices in sleep apnea. 1179-1185 - Bijoy Laxmi Koley, Debangshu Dey:
An ensemble system for automatic sleep stage classification using single channel EEG signal. 1186-1195 - A. V. Kuznetsov, D. G. Blinov, A. A. Avramenko, I. A. Kuznetsov:
Error correction in intracellular transport: Numerical investigation of rerouting of a pulse of misdirected axonal cargos in a dendrite. 1196-1203
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