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XSEDE 2014: Atlanta, GA, USA
- Scott A. Lathrop, Jay Alameda:
Annual Conference of the Extreme Science and Engineering Discovery Environment, XSEDE '14, Atlanta, GA, USA - July 13 - 18, 2014. ACM 2014, ISBN 978-1-4503-2893-7
Accelerating Discovery in Scholarly Research
- Abhilash Chaparala, Clara Novoa, Apan Qasem:
A SIMD Solution for the Quadratic Assignment Problem with GPU Acceleration. 1:1-1:8 - Joseph Paul Cohen
, Henry Z. Lo:
Academic Torrents: A Community-Maintained Distributed Repository. 2:1-2:2 - Meifeng Lin, Yasumichi Aoki, Thomas Blum, Taku Izubuchi, Chulwoo Jung, Shigemi Ohta
Accelerating Ab Initio Nucleon Structure Calculations with All-Mode-Averaging on Gordon. 3:1-3:2 - Jingwen Yan, Hui Zhang, Lei Du, Eric A. Wernert, Andrew J. Saykin
Accelerating Sparse Canonical Correlation Analysis for Large Brain Imaging Genetics Data. 4:1-4:7 - Ye Fan, Yan Liu, Shaowen Wang, David Tarboton
Accelerating TauDEM as a Scalable Hydrological Terrain Analysis Service on XSEDE. 5:1-5:2 - Jeffrey S. Young, M. Graham Lopez
Advanced Application Support for Improved GPU Utilization on Keeneland. 6:1-6:6 - Zheng Yin, Fuhai Li, Stephen T. C. Wong:
An Integrated Analytic Pipeline for Identifying and Predicting Genetic Interactions based on Perturbation Data from High Content Double RNAi Screening. 7:1-7:2 - Sukrit Sondhi, Ritu Arora:
Applying Lessons from e-Discovery to Process Big Data using HPC. 8:1-8:2 - M. Graham Lopez
Large-scale Hydrodynamic Brownian Simulations on Multicore and GPU Architectures. 9:1-9:2 - Scott Boone, Saravanan Arunachalam:
Calculation of Sensitivity Coefficients for Individual Airport Emissions in the Continental U.S. using CMAQ-DDM/PM. 10:1-10:8 - Dhawal Buaria
Challenges in particle tracking in turbulence on a massive scale. 11:1-11:2 - Adhiraj Dasgupta, Somesh Roy
Detailed computational modeling of laminar and turbulent sooting flames. 12:1-12:7 - Carlos Rosales, Robert T. McLay:
ECSS Experience: Particle Tracing Reinvented. 13:1-13:2 - Jeff A. Tracey, James K. Sheppard, Glenn K. Lockwood
Efficient 3D Movement-Based Kernel Density Estimator and Application to Wildlife Ecology. 14:1-14:8 - Rong Rong, Jiang Hao, Jason Liu
Performance Study of a Minimalistic Simulator on XSEDE Massively Parallel Systems. 15:1-15:8 - Robert S. Sinkovits
Fast, Low-Memory Algorithm for Construction of Nanosecond Level Snapshots of Financial Markets. 16:1-16:5 - Y. Dora Cai, Bettina Cassandra Riedl, Rabindra Robby Ratan
FeatureSelector: an XSEDE-Enabled Tool for Massive Game Log Analysis. 17:1-17:7 - Dulma Nugawela, Steven J. Stuart, Jacek Jakowski
Highly Energetic Collisions of Xe with Fullerene Clusters. 18:1-18:8 - Junqi Yin
Instrumenting Genomic Sequence Analysis Pipeline Mothur on Shared Memory Architecture. 19:1-19:4 - Philip D. Blood, Shoshana Marcus, Michael C. Schatz:
Large-scale Sequencing and Assembly of Cereal Genomes Using Blacklight. 20:1-20:6 - Virginia Kuhn, Michael Simeone
MOVIE: Large Scale Automated Analysis of MOVing ImagEs. 21:1-21:3 - Nikolai V. Pogorelov
MS-FLUKSS and Its Application to Modeling Flows of Partially Ionized Plasma in the Heliosphere. 22:1-22:8 - M. S. Pindzola, Sh. A. Abdel-Naby, Connor P. Ballance:
Photoionization of Ne8+. 23:1-23:2 - Lei Wang, James W. Mazzuca, Sophya Garashchuk
The hybrid Quantum Trajectory/Electronic Structure DFTB-based approach to Molecular Dynamics. 24:1-24:8 - Fugang Wang, Gregor von Laszewski, Geoffrey Charles Fox, Thomas R. Furlani
Towards a Scientific Impact Measuring Framework for Large Computing Facilities - a Case Study on XSEDE. 25:1-25:8 - Yu Zhuang, Michele Ceotto
Towards Efficient Direct Semiclassical Molecular Dynamics for Complex Molecular Systems. 26:1 - Kevin R. Shieh, Pilib Ó Broin, David Rhee, Matthew Levy, Aaron Golden:
Using SAGA and the Open Science Grid to Search for Aptamers. 27:1-27:4 - Galen Wesley Arnold, Manisha Gajbe, Seid Koric, John Urbanic:
XSEDE OpenACC workshop enables Blue Waters Researchers to Accelerate Key Algorithms. 28:1-28:6 - Bhanu Rekepalli, Yuri K. Peterson:
XSEDE Support: Revolutionizing the Next-Generation Therapeutic Drug Discovery. 29:1
Technology (Hardware and Systems Software)
- Mark R. Fahey:
A leap forward with UTK's Cray XC30. 30:1-30:8 - Joseph P. White
An Analysis of Node Sharing on HPC Clusters using XDMoD/TACC_Stats. 31:1-31:8 - Rick Mohr, Paul Peltz Jr.:
Benchmarking SSD-Based Lustre File System Configurations. 32:1-32:2 - Jérôme Vienne:
Benefits of Cross Memory Attach for MPI libraries on HPC Clusters. 33:1-33:6 - Paul Peltz Jr., Troy Baer:
Best Practices for Administering a Medium Sized Cluster with Intel® Xeon Phi™ Coprocessors. 34:1-34:8 - Warren Smith, Shava Smallen
Building an Information System for a Distributed Testbed. 35:1-35:8 - Gary L. Rogers Jr.
Data Management Practices on Large-Scale Lustre Scratch File Systems. 36:1-36:6 - Sudarshan Srinivasan, Victor Hazlewood, Gregory D. Peterson:
Descriptive Data Analysis of File Transfer Data. 37:1-37:8 - Natasha Pavlovikj, Kevin Begcy
Evaluating Distributed Platforms for Protein-Guided Scientific Workflow. 38:1-38:8 - Richard Lee Moore, Chaitan Baru, Diane Baxter, Geoffrey Charles Fox, Amitava Majumdar
Gateways to Discovery: Cyberinfrastructure for the Long Tail of Science. 39:1-39:8 - Lucas A. Wilson
Launcher: A Shell-based Framework for Rapid Development of Parallel Parametric Studies. 40:1-40:8 - Gwang Son, Victor Hazlewood, Gregory D. Peterson:
On Automating XSEDE User Ticket Classification. 41:1-41:7 - Troy Baer, Doug Johnson:
pbsacct: A Workload Analysis System for PBS-Based HPC Systems. 42:1-42:6 - Dong Ju Choi, Glenn K. Lockwood
Performance of Applications using Dual-Rail InfiniBand 3D Torus network on the Gordon Supercomputer. 43:1-43:6 - Nikoli Dryden:
PGDB: A Debugger for MPI Applications. 44:1-44:7 - Julio C. Olaya, Rodrigo A. Romero:
Runtime Pipeline Scheduling System for Heterogeneous Architectures. 45:1-45:7 - Alexander Merritt, Naila Farooqui, Magdalena Slawiñska, Ada Gavrilovska, Karsten Schwan, Vishakha Gupta:
Slices: Provisioning Heterogeneous HPC Systems. 46:1-46:8 - Glenn K. Lockwood
SR-IOV: Performance Benefits for Virtualized Interconnects. 47:1-47:7 - S. Patrick Calhoun, David Akin, Joshua Alexander, Brett Zimmerman, Fred Keller, Brandon George, Henry Neeman:
The Oklahoma PetaStore: A Business Model for Big Data on a Small Budget. 48:1-48:8 - Henry Neeman, David Akin, Joshua Alexander, Dana Brunson
The OneOklahoma Friction Free Network: Towards a Multi-Institutional Science DMZ in an EPSCoR State. 49:1-49:8 - Fei Xing, Haihang You:
Workload Aware Utilization Optimization for a Petaflop Supercomputer: Evidence Based Assessment Using Statistical Methods. 50:1-50:8
Software and Software Environments (Gateways, Bridging, and Applications)
- Ritu Arora, Julio C. Olaya, Madhav Gupta:
A Tool for Interactive Parallelization. 51:1-51:8 - Tom Bulatewicz, Daniel Andresen:
Accessible Parallelization for the Open Modeling Interface. 52:1-52:8 - Emre H. Brookes:
An Open Extensible Multi-Target Application Generation Tool for Simple Rapid Deployment of Multi-Scale Scientific Codes. 53:1-53:6 - Saurabh Jain, Daniel Jacob Tward, David S. Lee, Anthony Kolasny, Timothy Brown, J. Tilak Ratnanather
Computational Anatomy Gateway: Leveraging XSEDE Computational Resources for Shape Analysis. 54:1-54:6 - Rion Dooley
Dynamically Provisioning Portable Gateway Infrastructure Using Docker and Agave. 55:1-55:2 - Mark S. Shephard
HPC Simulation Workflows for Engineering Innovation. 56:1-56:2 - Ye Fan, Sudhakar Pamidighantam
Incorporating Job Predictions into the SEAGrid Science Gateway. 57:1-57:3 - Jim Basney, Jeff Gaynor, Suresh Marru, Marlon E. Pierce
Integrating Science Gateways with XSEDE Security: A Survey of Credential Management Approaches. 58:1-58:2 - Choonhan Youn, Viswanath Nandigam
Leveraging XSEDE HPC resources to address computational challenges with high-resolution topography data. 59:1-59:2 - Yannick Hold-Geoffroy, Olivier Gagnon, Marc Parizeau
Once you SCOOP, no need to fork. 60:1-60:8 - Shawn P. Coleman
Performance Improvement and Workflow Development of Virtual Diffraction Calculations. 61:1-61:7 - Fei Xing, Haihang You, Charng-Da Lu:
Statistical Performance Analysis for Scientific Applications. 62:1-62:8 - Guangchen Ruan, Hui Zhang, Eric A. Wernert, Beth Plale
TextRWeb: Large-Scale Text Analytics with R on the Web. 63:1-63:8 - Tabitha K. Samuel, M. Shahbaz Memon, Bernd Schuller, Shava Smallen
UNICORE in XSEDE: Through Development, Integration, Deployment and beyond. 64:1-64:8 - David L. Hart
XRAS: Allocations software as a service in XSEDE. 65:1-65:8
Education, Outreach, and Training
- Mike Morris, Karl Frinkle
A Three-Semester, Interdisciplinary Approach to Parallel Programming in a Liberal Arts University Setting. 66:1-66:7 - David Toth, Jeffrey Solka:
An Introductory Course on Modeling and Simulation. 67:1 - Razvan Carbunescu, Aditya Devarakonda
Architecting an autograder for parallel code. 68:1-68:8 - Diane A. Baxter, Beth Simon:
Clash of the Timelines: Lessons Learned from the Front Lines of CS Education. 69:1-69:5 - Uwe Hilgert
DNA Subway: Making Genome Analysis Egalitarian. 70:1-70:3 - Dirk Colbry:
iCER Interns: Engaging Undergraduates in High Performance Computing. 71:1-71:5 - Lorna Rivera, Lizanne DeStefano:
Integrating Performance Measurement and Program Evaluation to Promote Understanding. 72:1-72:2 - Ivan Babic, Aaron Weeden, Mobeen Ludin, Skylar Thompson, Charles Peck, Kristin Muterspaw, Andrew Fitz Gibbon, Jennifer Houchins
LittleFe and BCCD as a successful on-ramp to HPC. 73:1-73:7 - Jeremy Fischer
Methods For Creating XSEDE Compatible Clusters. 74:1-74:5 - Russell Feldhausen
Minimum Time, Maximum Effect: Introducing Parallel Computing in CS0 and STEM Outreach Activities Using Scratch. 75:1-75:7 - Gowtham S.:
Revision Control System (RCS) in computational sciences and engineering curriculum. 76:1-76:3 - Barbara Hallock, Richard Knepper
XSEDE Campus Bridging Pilot Case Study. 77:1-77:5
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