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15th ISMB / 6. ECCB 2007: Vienna, Austria (Supplement of Bioinformatics)
- Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), Vienna, Austria, July 21-25, 2007. 2007
- ISMB/ECCB 2007. 1-4
- ISMB/ECCB 2007 Organization. 5-9
- Evrim Acar
, Canan Aykut-Bingöl
Multiway analysis of epilepsy tensors. 10-18 - Mirela Andronescu, Anne Condon, Holger H. Hoos
Efficient parameter estimation for RNA secondary structure prediction. 19-28 - Sitaram Asur, Duygu Ucar
An ensemble framework for clustering protein-protein interaction networks. 29-40 - William A. Baumgartner Jr., K. Bretonnel Cohen, Lynne M. Fox, George K. Acquaah-Mensah
Manual curation is not sufficient for annotation of genomic databases. 41-48 - Tanya Y. Berger-Wolf, Saad I. Sheikh, Bhaskar DasGupta, Mary V. Ashley, Isabel C. Caballero, Wanpracha Art Chaovalitwongse, Satya Lahari Putrevu:
Reconstructing sibling relationships in wild populations. 49-56 - Kevin Bleakley, Gérard Biau, Jean-Philippe Vert
Supervised reconstruction of biological networks with local models. 57-65 - Shann-Ching Chen, Ting Zhao, Geoffrey J. Gordon, Robert F. Murphy:
Automated image analysis of protein localization in budding yeast. 66-71 - Xiaoyu Chen, Timothy R. Hughes, Quaid Morris
RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors. 72-79 - Ho-Ryun Chung
A physical model for tiling array analysis. 80-86 - Miklós Csürös, J. Andrew Holey, Igor B. Rogozin
In search of lost introns. 87-96 - Xuefeng Cui, Tomás Vinar
Homology search for genes. 97-103 - Samuel A. Danziger, Jue Zeng, Ying Wang, Rainer K. Brachmann, Richard H. Lathrop:
Choosing where to look next in a mutation sequence space: Active Learning of informative p53 cancer rescue mutants. 104-114 - Gihan Dawelbait, Christof Winter
Structural templates predict novel protein interactions and targets from pancreas tumour gene expression data. 115-124 - Tijl De Bie, Léon-Charles Tranchevent
Kernel-based data fusion for gene prioritization. 125-132 - Jeroen de Ridder, Jaap Kool, Anthony Uren
Co-occurrence analysis of insertional mutagenesis data reveals cooperating oncogenes. 133-141 - Charlotte M. Deane
Cotranslational protein folding - fact or fiction? 142-148 - Janusz Dutkowski, Jerzy Tiuryn
Identification of functional modules from conserved ancestral protein-protein interactions. 149-158 - Matthew D. Dyer, T. M. Murali, Bruno W. S. Sobral
Computational prediction of host-pathogen protein-protein interactions. 159-166 - Jesús K. Estrada-Gil, Juan C. Fernández-López, Enrique Hernández-Lemus
GPDTI: A Genetic Programming Decision Tree Induction method to find epistatic effects in common complex diseases. 167-174 - Eran Eyal, Chakra Chennubhotla, Lee-Wei Yang, Ivet Bahar:
Anisotropic fluctuations of amino acids in protein structures: insights from X-ray crystallography and elastic network models. 175-184 - Ivelin Georgiev, Bruce Randall Donald:
Dead-End Elimination with Backbone Flexibility. 185-194 - Stefan Gräf, Fiona G. G. Nielsen
Optimized design and assessment of whole genome tiling arrays. 195-204 - Michelle L. Green, Peter D. Karp
Using genome-context data to identify specific types of functional associations in pathway/genome databases. 205-211 - Jim C. Huang, Anitha Kannan, John M. Winn:
Bayesian association of haplotypes and non-genetic factors to regulatory and phenotypic variation in human populations. 212-221 - Yu Huang, Haifeng Li, Haiyan Hu, Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong Jasmine Zhou:
Systematic discovery of functional modules and context-specific functional annotation of human genome. 222-229 - Wataru Iwasaki
Reconstruction of highly heterogeneous gene-content evolution across the three domains of life. 230-239 - Etai Jacob, Amnon Horovitz, Ron Unger:
Different mechanistic requirements for prokaryotic and eukaryotic chaperonins: a lattice study. 240-248 - Miriam R. Kantorovitz, Gene E. Robinson, Saurabh Sinha:
A statistical method for alignment-free comparison of regulatory sequences. 249-255 - Jee-Hyub Kim
Learning to extract relations for protein annotation. 256-263 - Corinna Kolárik, Martin Hofmann-Apitius, Marc Zimmermann, Juliane Fluck
Identification of new drug classification terms in textual resources. 264-272 - Eva Lange, Clemens Gröpl, Ole Schulz-Trieglaff, Andreas Leinenbach, Christian G. Huber
A geometric approach for the alignment of liquid chromatography - mass spectrometry data. 273-281 - Wei Keat Lim, Kai Wang
Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks. 282-288 - Gerton Lunter
Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes. 289-296 - Shaun Mahony
Inferring protein-DNA dependencies using motif alignments and mutual information. 297-304 - Florian Markowetz, Dennis Kostka, Olga G. Troyanskaya
Nested effects models for high-dimensional phenotyping screens. 305-312 - Tristan Mary-Huard, Jean-Jacques Daudin, Michela Baccini, Annibale Biggeri
Biases induced by pooling samples in microarray experiments. 313-318 - Itay Mayrose, Adi Doron-Faigenboim, Eran Bacharach
Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates. 319-327 - Sean McIlwain, David Page, Edward L. Huttlin
Using dynamic programming to create isotopic distribution maps from mass spectra. 328-336 - Chris Mungall
A Chado case study: an ontology-based modular schema for representing genome-associated biological information. 337-346 - Yanay Ofran, Venkatesh Mysore, Burkhard Rost
Prediction of DNA-binding residues from sequence. 347-353 - Jung Hun Ohn, Jihun Kim, Ju Han Kim:
Genomic characterization of perturbation sensitivity. 354-358 - Oved Ourfali, Tomer Shlomi, Trey Ideker
SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments. 359-366 - Yue Pan, Tim Durfee, Joseph Bockhorst, Mark Craven:
Connecting quantitative regulatory-network models to the genome. 367-376 - Jayesh Pandey, Mehmet Koyutürk
Functional annotation of regulatory pathways. 377-386 - Frank Panitz
SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation. 387-391 - Janina Reeder, Jens Reeder, Robert Giegerich:
Locomotif: from graphical motif description to RNA motif search. 392-400 - Adam Roberts, Leonard McMillan
Inferring missing genotypes in large SNP panels using fast nearest-neighbor searches over sliding windows. 401-407 - Romain Rossi, Mathieu Isorce, Sandy Morin, Julien Flocard, Karthik Arumugam, Serge Crouzy, Michel Vivaudou
Adaptive torsion-angle quasi-statics: a general simulation method with applications to protein structure analysis and design. 408-417 - Yvan Saeys
Translation initiation site prediction on a genomic scale: beauty in simplicity. 418-423 - Olivia Sanchez-Graillet, Massimo Poesio
Negation of protein-protein interactions: analysis and extraction. 424-432 - David Sankoff, Chunfang Zheng, Qian Zhu:
Polyploids, genome halving and phylogeny. 433-439 - Liat Segal, Michal Lapidot, Zach Solan, Eytan Ruppin, Yitzhak Pilpel, David Horn
Nucleotide variation of regulatory motifs may lead to distinct expression patterns. 440-449 - Sohrab P. Shah, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy:
Modeling recurrent DNA copy number alterations in array CGH data. 450-458 - Yanxin Shi, Michael Klutstein, Itamar Simon
Continuous hidden process model for time series expression experiments. 459-467 - Motoki Shiga
Annotating gene function by combining expression data with a modular gene network. 468-478 - Kyung-Ah Sohn
Spectrum: joint bayesian inference of population structure and recombination events. 479-489 - Le Song, Justin Bedo
Gene selection via the BAHSIC family of algorithms. 490-498 - Xiaoyun Sun
Computational modeling of Caenorhabditis elegans vulval induction. 499-507 - Suman Sundaresh, Arlo Z. Randall, Berkay Unal, Jeannine M. Petersen, John T. Belisle
From protein microarrays to diagnostic antigen discovery: a study of the pathogen Francisella tularensis. 508-518 - Marko Sysi-Aho, Aki Vehtari
Exploring the lipoprotein composition using Bayesian regression on serum lipidomic profiles. 519-528 - Ying Tao, Lee T. Sam, Jianrong Li, Carol Friedman, Yves A. Lussier
Information theory applied to the sparse gene ontology annotation network to predict novel gene function. 529-538 - Lydia Tapia, Xinyu Tang, Shawna L. Thomas, Nancy M. Amato:
Kinetics analysis methods for approximate folding landscapes. 539-548 - Ilan Wapinski, Avi Pfeffer, Nir Friedman
Automatic genome-wide reconstruction of phylogenetic gene trees. 549-558 - Travis J. Wheeler
Multiple alignment by aligning alignments. 559-568 - Song Wu, Jie Yang, Rongling Wu:
Semiparametric functional mapping of quantitative trait loci governing long-term HIV dynamics. 569-576 - Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu, Xianghong Jasmine Zhou:
A graph-based approach to systematically reconstruct human transcriptional regulatory modules. 577-586
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