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4. APBC 2006: Taipei, Taiwan
- Tao Jiang, Ueng-Cheng Yang, Yi-Ping Phoebe Chen, Limsoon Wong:
Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February 2006, Taipei, Taiwan. Imperial College Press, London 2006, ISBN 1-86094-623-2
Preface
- Tao Jiang, Ueng-Cheng Yang, Yi-Ping Phoebe Chen, Limsoon Wong:
Preface.
Keynote Papers
- Wen-Hsiung Li:
On the Inference of Regulatory Elements, Circuits, and Modules. 1 - Mark A. Ragan:
Automating the Search for Lateral Gene Transfer. 3 - Michael S. Waterman:
Whole Genome Optical Mapping. 5
Contributed Papers
- Dmitry A. Konovalov:
Accuracy of Four Heuristics for the Full Sibship Reconstruction Problem in the Presence of Genotype Errors. 7-16 - Patrick C. H. Ma, Keith C. C. Chan:
Inference of Gene Regulatory Networks from Microarray Data: A Fuzzy Logic Approach. 17-26 - C. W. Li, W. C. Chang, B. S. Chen:
System Identification and Robustness Analysis of the Circadian Regulatory Network via Microarray Data in Arabidopsis Thaliana. 27-37 - Paul Horton, Keun-Joon Park, Takeshi Obayashi, Kenta Nakai:
Protein Subcellular Localisation Prediction with WoLF PSORT. 39-48 - Pin-Hao Chi, Chi-Ren Shyu:
Predicting Ranked SCOP Domains by Mining Associations of Visual Contents in Distance Matrices. 49-58 - Derek A. Ruths, Luay Nakhleh:
RECOMP: A Parsimony-Based Method for Detecting Recombination. 59-68 - Hee-Jeong Jin, Hye-Jung Kim, Jeong-Hyeon Choi, Hwan-Gue Cho:
AlignScope: A Visual Mining Tool for Gene Team Finding with Whole Genome Alignment. 69-78 - Francis Y. L. Chin, Henry C. M. Leung:
An Efficient Algorithm for String Motif Discovery. 79-88 - Yuji Kawada, Yasubumi Sakakibara:
Discriminative Detection of Cis-Acting Regulatory Variation From Location Data. 89-98 - Tatsuya Akutsu, Morihiro Hayashida, Wai-Ki Ching, Michael K. Ng:
On the Complexity of Finding Control Strategies for Boolean Networks. 99-108 - Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner:
Characterization of Multi-Charge Mass Spectra for Peptide Sequencing. 109-119 - Yifei Ma, Guoren Wang, Yongguang Li, Yuhai Zhao:
EDAM: An Efficient Clique Discovery Algorithm with Frequency Transformation for Finding Motifs. 119-128 - Michael K. Ng:
A Recursive Method for Solving Haplotype Frequencies in Multiple Loci Linkage Analysis. 129-138 - Sabyasachi Das, Sandip Paul, Chitra Dutta:
Trends in Codon and Amino Acid Usage in Human Pathogen Tropheryma Whipplei, the only Known Actinobacteria with Reduced Genome. 139-148 - Sandip Paul, Sabyasachi Das, Chitra Dutta:
Consequences of Mutation, Selection, and Physico-Chemical Properties of Encoded Proteins on Synonymous Codon Usage in Adenoviruses. 149-158 - Zhipeng Cai, Maysam Heydari, Guohui Lin:
Microarray Missing Value Imputation by Iterated Local Least Squares. 159-168 - Steinar Thorvaldsen, Elinor Ytterstad, Tor Flå:
Property-Dependent Analysis of Aligned Proteins from Two Or More Populations. 169-178 - Li Shen, Eng Chong Tan:
A Generalized Output-Coding Scheme with SVM for Multiclass Microarray Classification. 179-186 - Derek A. Ruths, Luay Nakhleh:
Techniques for Assessing Phylogenetic Branch Support: A Performance Study. 187-196 - Yi-Ping Phoebe Chen, Qingfeng Chen:
Analyzing Inconsistency Toward Enhancing Integration of Biological Molecular Databases. 197-206 - Christine Sinoquet:
A Novel Approach for Structured Consensus Motif Inference Under Specificity and Quorum Constraints. 207-216 - Christopher James Langmead:
A Randomized Algorithm for Learning Mahalanobis Metrics: Application to Classification and Regression of Biological Data. 217-226 - Marcos J. Araúzo-Bravo, Satoshi Fujii, Hidetoshi Kono, Akinori Sarai:
Disentangling the Role of Tetranucleotide in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics Approach. 227-236 - Zhong-Ru Xie, Ming-Jing Hwang:
A New Neural Network for B-Turn Prediction: the Effect of Site-Specific Amino Acid Preference. 237-246 - Shao-Shan Huang, Debra L. Fulton, David J. Arenillas, Paul Perco, Shannan J. Ho Sui, James R. Mortimer, Wyeth W. Wasserman:
Identification of Over-Represented Combinations of Transcription Factor Binding Sites in Sets of Co-Expressed Genes. 247-256 - Ching-Tai Chen, Hsin-Nan Lin, Kuen-Pin Wu, Ting-Yi Sung, Wen-Lian Hsu:
A Knowledge-Based Approach to Protein Local Structure Prediction. 257-266 - Liang Huai Yang, Wynne Hsu, Mong-Li Lee, Limsoon Wong:
Identification of MicroRNA Precursors via SVM. 267-276 - M. Shashikanth, A. Snethalatharani, S. K. Mubarak, K. Ulaganathan:
Genome Wide Computational Analysis of Small Nuclear RNA Genes for Oryza Sativa (Indica and Japonica). 277-286 - Xiaoxu Han:
Resolving the Gene Tree and Species Tree Problem by Phylogenetic Mining. 287-296 - Ján Manuch, Xiaohong Zhao, Ladislav Stacho, Arvind Gupta:
Characterization of the Existence of Galled-Tree Networks. 297-306 - Johannes Aßfalg, Hans-Peter Kriegel, Peer Kröger, Peter Kunath, Alexey Pryakhin, Matthias Renz:
Semi-Supervised Threshold Queries on Pharmacogenomics Time Sequences. 307-316 - K. Arun, Christopher James Langmead:
Structure-Based Chemical Shift Prediction Using Random Forests Non-Linear Regression. 317-326 - Minlie Huang, Xiaoyan Zhu, Shilin Ding, Hao Yu, Ming Li:
ONBRIRES: Ontology-Based Biological Relation Extraction System. 327-336 - P. Y. Chan, Tak Wah Lam, Siu-Ming Yiu:
A More Accurate and Efficient Whole Genome Phylogeny. 337-352 - De Pan, Fei Wang:
Gene Expression Data Clustering Based on Local Similarity Combination. 353-362
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