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Sílvia Delgado Olabarriaga
Sílvia D. Olabarriaga
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- affiliation: Federal University of Rio Grande do Sul, Porto Alegre, Brazil
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2020 – today
- 2023
- [j33]Marcela T. de Oliveira
, Yiannis Verginadis
AC-ABAC: Attribute-based access control for electronic medical records during acute care. Expert Syst. Appl. 213(Part): 119271 (2023) - 2022
- [j32]Marcela Tuler de Oliveira
SmartAccess: Attribute-Based Access Control System for Medical Records Based on Smart Contracts. IEEE Access 10: 117836-117854 (2022) - [c60]Lúcio Henrik A. Reis, Marcela T. de Oliveira
Fine-grained Encryption for Secure Research Data Sharing. CBMS 2022: 465-470 - 2021
- [c59]Lúcio Henrik A. Reis, Marcela T. de Oliveira
Private Data Sharing in a Secure Cloud-based Application for Acute Stroke Care. CBMS 2021: 568-573 - [c58]Lúcio Henrik A. Reis, Marcela Tuler de Oliveira
Cryptography on Untrustworthy Cloud Storage for Healthcare Applications: A Performance Analysis. SBESC 2021: 1-8 - 2020
- [j31]Tom Tervoort
Solutions for Mitigating Cybersecurity Risks Caused by Legacy Software in Medical Devices: A Scoping Review. IEEE Access 8: 84352-84361 (2020) - [j30]Marcela T. de Oliveira
A break-glass protocol based on ciphertext-policy attribute-based encryption to access medical records in the cloud. Ann. des Télécommunications 75(3-4): 103-119 (2020) - [j29]Marcela T. de Oliveira, Lúcio Henrik A. Reis, Dianne S. V. Medeiros, Ricardo Campanha Carrano, Sílvia D. Olabarriaga, Diogo M. F. Mattos
Blockchain reputation-based consensus: A scalable and resilient mechanism for distributed mistrusting applications. Comput. Networks 179: 107367 (2020) - [c57]Taridzo Chomutare, Kassaye Yitbarek Yigzaw
Healthcare and data privacy requirements for e-health cloud: A qualitative analysis of clinician perspectives. HealthCom 2020: 1-8
2010 – 2019
- 2019
- [j28]Allard J. van Altena
Usage of the Term Big Data in Biomedical Publications: A Text Mining Approach. Big Data Cogn. Comput. 3(1): 13 (2019) - [j27]Adam Hilbert
Data-efficient deep learning of radiological image data for outcome prediction after endovascular treatment of patients with acute ischemic stroke. Comput. Biol. Medicine 115 (2019) - [j26]Michelle Barker
The global impact of science gateways, virtual research environments and virtual laboratories. Future Gener. Comput. Syst. 95: 240-248 (2019) - [c56]Marcela T. de Oliveira
Red Alert: Break-Glass Protocol to Access Encrypted Medical Records in the Cloud. HealthCom 2019: 1-7 - [c55]Marcela T. de Oliveira
Towards a Blockchain-Based Secure Electronic Medical Record for Healthcare Applications. ICC 2019: 1-6 - 2018
- [j25]Sílvia Delgado Olabarriaga
Special isssue of the CCGrid-Life workshop 2017. Concurr. Comput. Pract. Exp. 30(12) (2018) - 2017
- [j24]Ketan Maheshwari, Daniel S. Katz
Report on the first workshop on negative and null results in eScience. Concurr. Comput. Pract. Exp. 29(2) (2017) - [j23]Tristan Glatard
Software architectures to integrate workflow engines in science gateways. Future Gener. Comput. Syst. 75: 239-255 (2017) - [c54]Allard J. van Altena, Perry D. Moerland, Aeilko H. Zwinderman, Sílvia D. Olabarriaga:
Analysis of the term 'big data': Usage in biomedical publications. IEEE BigData 2017: 1253-1258 - [c53]Allard J. van Altena, Sílvia Delgado Olabarriaga:
Predicting Publication Inclusion for Diagnostic Accuracy Test Reviews Using Random Forests and Topic Modelling. CLEF (Working Notes) 2017 - [c52]Allard Jan-Jaap van Altena, Sílvia Delgado Olabarriaga:
(Bio)medical Publications in the Age of Big Data: Yes, They Are Different. DH 2017: 221-222 - 2016
- [j22]Sílvia Delgado Olabarriaga, Nancy Wilkins-Diehr:
GCE15 Special Issue Conference Publications. Concurr. Comput. Pract. Exp. 28(7): 1949-1951 (2016) - [j21]Allard J. van Altena, Perry D. Moerland
Understanding big data themes from scientific biomedical literature through topic modeling. J. Big Data 3: 23 (2016) - [j20]Mohammad Mahdi Jaghoori, Boris Bleijlevens, Sílvia Delgado Olabarriaga:
1001 Ways to run AutoDock Vina for virtual screening. J. Comput. Aided Mol. Des. 30(3): 237-249 (2016) - [j19]Renan Sales Barros, Sílvia Delgado Olabarriaga, Jordi Borst, Marianne A. A. van Walderveen, Jorrit S. Posthuma, Geert J. Streekstra, Marcel van Herk
Dynamic CT perfusion image data compression for efficient parallel processing. Medical Biol. Eng. Comput. 54(2-3): 463-473 (2016) - [c51]Gabriele Pierantoni, Dermot Frost, Sandra Gesing, Sílvia Delgado Olabarriaga, Mohammad Mahdi Jaghoori, Gábor Terstyánszky, Junaid Arshad:
A Model for Information and Action Flows Connecting Science Gateways to Distributed Computing Infrastructures. IWSG 2016 - [c50]Shayan Shahand, Sílvia Delgado Olabarriaga:
Rosemary: A Flexible Programming Framework to Build Science Gateways. IWSG 2016 - [i2]Shayan Shahand
Rosemary: a flexible programming framework to build Science Gateways. PeerJ Prepr. 4: e2576 (2016) - 2015
- [j18]Shayan Shahand
A data-centric neuroscience gateway: design, implementation, and experiences. Concurr. Comput. Pract. Exp. 27(2): 489-506 (2015) - [j17]Shayan Shahand
Reflections on science gateways sustainability through the business model canvas: case study of a neuroscience gateway. Concurr. Comput. Pract. Exp. 27(16): 4269-4281 (2015) - [j16]Mohammad Mahdi Jaghoori, Allard J. van Altena, Boris Bleijlevens, Sara Ramezani, Juan Luis Font, Sílvia D. Olabarriaga:
A multi-infrastructure gateway for virtual drug screening. Concurr. Comput. Pract. Exp. 27(16): 4478-4490 (2015) - [c49]Renan Sales Barros, Jordi Borst, Steven Kleynenberg, Celine Badr, Rama-Rao Ganji, Hubrecht de Bliek, Landry-Stéphane Zeng-Eyindanga, Henk van den Brink, Charles B. L. M. Majoie, Henk A. Marquering
Remote Collaboration, Decision Support, and On-Demand Medical Image Analysis for Acute Stroke Care. ESOCC 2015: 214-225 - [c48]Shayan Shahand
Science Gateway Canvas: A business reference model for Science Gateways. SCREAM@HPDC 2015: 45-52 - [c47]Jalmar Teeuw
Robust Automated White Matter Pathway Reconstruction for Large Studies. MICCAI (1) 2015: 101-108 - [i1]Ammar Benabdelkader, Antoine H. C. van Kampen, Sílvia D. Olabarriaga:
PROV-man: A PROV-compliant toolkit for provenance management. PeerJ Prepr. 3: e1102 (2015) - 2014
- [c46]Sílvia Delgado Olabarriaga, Gabriele Pierantoni, Giuliano Taffoni
Scientific Workflow Management - For Whom? eScience 2014: 298-305 - [c45]Gábor Terstyánszky, Tamás Kiss
Analyzing and Modeling of Medical Data on Distributed Computing Infrastructures. HICSS 2014: 2918-2927 - [c44]Mohammad Mahdi Jaghoori, Allard J. van Altena, Boris Bleijlevens, Sílvia D. Olabarriaga:
A Grid-Enabled Virtual Screening Gateway. IWSG 2014: 24-29 - [c43]Shayan Shahand, Sílvia Delgado Olabarriaga:
Initial steps in analyzing science gateways sustainability through business model canvas: a use case for the computational neuroscience gateway. GCE@SC 2014: 5-8 - [c42]Mohammad Mahdi Jaghoori, Sara Ramezani, Sílvia Delgado Olabarriaga:
User-oriented partial result evaluation in workflow-based science gateways. WORKS@SC 2014: 70-81 - [p2]Shayan Shahand
Computational Neuroscience Gateway: A Science Gateway Based on the WS-PGRADE/gUSE. Science Gateways for Distributed Computing Infrastructures 2014: 139-149 - [p1]Sílvia Delgado Olabarriaga, Ammar Benabdelkader, Matthan W. A. Caan, Mohammad Mahdi Jaghoori, Jens Krüger, Luis de la Garza, Christopher Mohr, Benjamin Schubert, Anatoli Danezi, Tamás Kiss
WS-PGRADE/gUSE-Based Science Gateways in Teaching. Science Gateways for Distributed Computing Infrastructures 2014: 223-234 - 2013
- [j15]Souley Madougou, Shayan Shahand
Characterizing workflow-based activity on a production e-infrastructure using provenance data. Future Gener. Comput. Syst. 29(8): 1931-1942 (2013) - [j14]Vladimir Korkhov
Exploring Workflow Interoperability for Neuroimage Analysis on the SHIWA Platform. J. Grid Comput. 11(3): 505-522 (2013) - [c41]Mark Santcroos, Barbera D. C. van Schaik
Exploring Dynamic Enactment of Scientific Workflows Using Pilot-Abstractions. CCGRID 2013: 311-318 - [c40]Renan Sales Barros, Sytse van Geldermalsen, Anna M. M. Boers, Adam S. Z. Belloum
Heterogeneous Platform Programming for High Performance Medical Imaging Processing. Euro-Par Workshops 2013: 301-310 - [c39]Barbera D. C. van Schaik, Mark Santcroos, Souley Madougou, Aldo Jongejan, Antoine H. C. van Kampen, Sílvia Delgado Olabarriaga:
e-Bioscience Solutions and Challenges for Next Generation Sequencing Experiments. IWBBIO 2013: 333-334 - [c38]Zoltán Farkas, Péter Kacsuk, Ákos Balaskó, Krisztián Karóczkai, Mark Santcroos, Sílvia D. Olabarriaga:
Data Bridge: solving diverse Data Access in Scientific Applications. IWSG 2013 - [c37]Evert Mouw, Guido van 't Noordende, Baas Louter, Sílvia Delgado Olabarriaga:
A Model-based Information Security Risk Assessment Method for Science Gateways. IWSG 2013 - [c36]Shayan Shahand, Ammar Benabdelkader, Jordi Huguet, Mohammad Mahdi Jaghoori, Mark Santcroos, Mostapha al Mourabit, Paul F. C. Groot, Matthan W. A. Caan, Antoine H. C. van Kampen, Sílvia D. Olabarriaga:
A Data-Centric Science Gateway for Computational Neuroscience. IWSG 2013 - [c35]Sílvia Delgado Olabarriaga, Mohammad Mahdi Jaghoori, Vladimir Korkhov
Understanding workflows for distributed computing: nitty-gritty details. WORKS@SC 2013: 68-76 - 2012
- [j13]Matthan W. A. Caan
Evolution of grid-based services for Diffusion Tensor Image analysis. Future Gener. Comput. Syst. 28(8): 1194-1204 (2012) - [j12]Shayan Shahand
A Grid-Enabled Gateway for Biomedical Data Analysis. J. Grid Comput. 10(4): 725-742 (2012) - [c34]Mark Santcroos, Sílvia Delgado Olabarriaga, Daniel S. Katz
Pilot abstractions for compute, data, and network. eScience 2012: 1-2 - [c33]Tristan Glatard, Sílvia D. Olabarriaga, Tony Solomonides:
HealthGrid 2012. HealthGrid 2012: 3-6 - [c32]Evert Mouw, Guido van 't Noordende, Antoine H. C. van Kampen, Baas Louter, Mark Santcroos, Sílvia D. Olabarriaga:
Legal constraints on genetic data processing in European grids. HealthGrid 2012: 49-58 - [c31]Souley Madougou, Mark Santcroos, Ammar Benabdelkader, Barbera D. C. van Schaik, Shayan Shahand
Provenance for distributed biomedical workflow execution. HealthGrid 2012: 91-100 - [c30]Vladimir Korkhov, Dagmar Krefting, Johan Montagnat, Tram Truong Huu, Tamas Kukla, Gábor Terstyánszky, David Manset, Matthan W. A. Caan, Sílvia D. Olabarriaga:
SHIWA workflow interoperability solutions for neuroimaging data analysis. HealthGrid 2012: 109-110 - [c29]Shayan Shahand
Integrated Support for Neuroscience Research: from Study Design to Publication. HealthGrid 2012: 195-204 - [e1]Sandra Gesing, Tristan Glatard, Jens Krüger, Sílvia Delgado Olabarriaga, Tony Solomonides, Jonathan C. Silverstein, Johan Montagnat, Alban Gaignard, Dagmar Krefting:
HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences, Proceedings of HealthGrid 2012, Amsterdam, The Netherlands, 21-23 May 2012. Studies in Health Technology and Informatics 175, IOS Press 2012, ISBN 978-1-61499-053-6 [contents] - 2011
- [c28]Ammar Benabdelkader, Mark Santcroos, Souley Madougou, Antoine H. C. van Kampen, Sílvia D. Olabarriaga:
A Provenance Approach to Trace Scientific Experiments on a Grid Infrastructure. eScience 2011: 134-141 - [c27]Yassene Mohammed
Data Decomposition in Biomedical e-Science Applications. e-Science Workshops 2011: 158-165 - [c26]Vladimir Korkhov
Exploring workflow interoperability tools for neuroimaging data analysis. WORKS@SC 2011: 87-96 - 2010
- [j11]Angela C. M. Luyf, Barbera D. C. van Schaik
Initial steps towards a production platform for DNA sequence analysis on the grid. BMC Bioinform. 11: 598 (2010) - [j10]Sílvia D. Olabarriaga, Johan Montagnat:
Special section: Medical imaging on grids. Future Gener. Comput. Syst. 26(4): 678-680 (2010) - [j9]Tristan Glatard
Large-scale functional MRI study on a production grid. Future Gener. Comput. Syst. 26(4): 685-692 (2010) - [j8]Sílvia D. Olabarriaga, Tristan Glatard
A virtual laboratory for medical image analysis. IEEE Trans. Inf. Technol. Biomed. 14(4): 979-985 (2010) - [j7]Matthan W. A. Caan
Estimation of Diffusion Properties in Crossing Fiber Bundles. IEEE Trans. Medical Imaging 29(8): 1504-1515 (2010) - [c25]Matthan W. A. Caan
Gridifying a Diffusion Tensor Imaging Analysis Pipeline. CCGRID 2010: 733-738 - [c24]Femida Gwadry-Sridhar, Sílvia Delgado Olabarriaga, Antoine H. C. van Kampen, Michael Bauer, Tony Solomonides:
Hitting the ground running: Healthgrid deployment and adoption. HealthGrid 2010: 40-51 - [c23]Matthan W. A. Caan
Adaptive Noise Filtering for Accurate and Precise Diffusion Estimation in Fiber Crossings. MICCAI (1) 2010: 167-174
2000 – 2009
- 2009
- [j6]Guido van 't Noordende, Sílvia D. Olabarriaga, Matthijs R. Koot, Cees de Laat:
A Trusted Data Storage Infrastructure for Grid-Based Medical Applications. Int. J. Grid High Perform. Comput. 1(2): 1-14 (2009) - [c22]Sílvia Delgado Olabarriaga, Tristan Glatard, Andreas Hoheisel, Aart J. Nederveen, Dagmar Krefting
Crossing HealthGrid Borders: Early Results in Medical Imaging. HealthGrid 2009: 62-71 - 2008
- [c21]Tristan Glatard, Kamel Boulebiar, Sílvia D. Olabarriaga:
Workflow Integration in VL-e Medical. CBMS 2008: 144-146 - [c20]Simon Caton
Using Dynamic Condor-Based Services for Classifying Schizophrenia in Diffusion Tensor Images. CCGRID 2008: 234-241 - [c19]Guido van 't Noordende, Sílvia Delgado Olabarriaga, Matthijs R. Koot, Cees T. A. M. de Laat:
A Trusted Data Storage Infrastructure for Grid-Based Medical Applications. CCGRID 2008: 627-632 - [c18]Tristan Glatard, Sílvia Delgado Olabarriaga:
User Friendly Management of Workflow Results: From Provenance Information to Grid Logical File Names. eScience 2008: 103-110 - [c17]Sílvia D. Olabarriaga, Tristan Glatard, Kamel Boulebiar, Piter T. de Boer:
From "Low Hanging" to "User Ready": Initial Steps into a HealthGrid. HealthGrid 2008: 70-79 - 2007
- [j5]Sílvia Delgado Olabarriaga, Jeroen G. Snel, Charl P. Botha, Robert G. Belleman:
Integrated Support for Medical Image Analysis Methods: From Development to Clinical Application. IEEE Trans. Inf. Technol. Biomed. 11(1): 47-57 (2007) - [c16]Ketan C. Maheshwari, Sílvia Delgado Olabarriaga, Charl P. Botha, Jeroen G. Snel, Johan Alkemade, Adam Belloum
Problem Solving Environment for Medical Image Analysis. CBMS 2007: 165-170 - [c15]Sílvia Delgado Olabarriaga, Aart J. Nederveen, Breanndán Ó Nualláin:
Parameter Sweeps for Functional MRI Research in the "Virtual Laboratory for e-Science" Project. CCGRID 2007: 685-690 - 2006
- [c14]Jeroen G. Snel, Sílvia Delgado Olabarriaga, Johan Alkemade, Hugo A. F. Gratama van Andel, Aart J. Nederveen, Charles B. L. M. Majoie, G. J. den Heeten, Marcel van Straten, Robert G. Belleman:
A Distributed Workflow Management System for Automated Medical Image Analysis and Logistics. CBMS 2006: 733-738 - [c13]Sílvia Delgado Olabarriaga, Piter T. de Boer, Ketan C. Maheshwari, Adam Belloum
Virtual Lab for fMRI: Bridging the Usability Gap. e-Science 2006: 53 - [c12]Sílvia Delgado Olabarriaga, Aart J. Nederveen, Jeroen G. Snel, Robert G. Belleman:
Towards A Virtual Laboratory for fMRI Data Management and Analysis. HealthGrid 2006: 43-54 - [c11]Rafael Huff, Carlos Augusto Dietrich, Luciana Porcher Nedel
Erasing, digging and clipping in volumetric datasets with one or two hands. VRCIA 2006: 271-278 - 2005
- [j4]Sílvia Delgado Olabarriaga, Jean-Michel Rouet, Maxim Fradkin, Marcel Breeuwer, Wiro J. Niessen
Segmentation of thrombus in abdominal aortic aneurysms from CTA with nonparametric statistical grey level appearance modeling. IEEE Trans. Medical Imaging 24(4): 477-485 (2005) - 2004
- [c10]Sílvia Delgado Olabarriaga, Marcel Breeuwer, Wiro J. Niessen:
Segmentation of Abdominal Aortic Aneurysms with a Non-parametric Appearance Model. ECCV Workshops CVAMIA and MMBIA 2004: 257-268 - [c9]Sílvia Delgado Olabarriaga, Marcel Breeuwer, Wiro J. Niessen:
Multi-scale Statistical Grey Value Modelling for Thrombus Segmentation from CTA. MICCAI (1) 2004: 467-474 - [c8]Carlos Augusto Dietrich, Luciana Porcher Nedel
Real-time interactive visualization and manipulation of the volumetric data using GPU-based methods. Medical Imaging: Image-Guided Procedures 2004 - 2003
- [j3]Tibério S. Caetano, Sílvia D. Olabarriaga, Dante Augusto Couto Barone:
Do mixture models in chromaticity space improve skin detection? Pattern Recognit. 36(12): 3019-3021 (2003) - [c7]Sílvia Delgado Olabarriaga, Wiro J. Niessen, Marcel Breeuwer:
Evaluation of Hessian-based filters to enhance the axis of coronary arteries in CT images. CARS 2003: 1191-1196 - [c6]Sílvia Delgado Olabarriaga, Marcel Breeuwer, Wiro J. Niessen:
Minimum Cost Path Algorithm for Coronary Artery Central Axis Tracking in CT Images. MICCAI (2) 2003: 687-694 - 2002
- [c5]Isabel Harb Manssour, Sérgio Shiguemi Furuie
Visualizing Inner Structures in Multimodal Volume Data. SIBGRAPI 2002: 51-58 - [c4]Tibério S. Caetano, Sílvia D. Olabarriaga, Dante Augusto Couto Barone:
Performance Evaluation of Single and Multiple-Gaussian Models for Skin Color Modeling. SIBGRAPI 2002: 275-282 - 2001
- [j2]Sílvia Delgado Olabarriaga, Arnold W. M. Smeulders:
Interaction in the segmentation of medical images: A survey. Medical Image Anal. 5(2): 127-142 (2001) - [c3]Ana Maria Marques da Silva
On Determining a Signature for Skeletal Maturity. SIBGRAPI 2001: 246-251
1990 – 1999
- 1999
- [c2]Sílvia D. Olabarriaga, Arnold W. M. Smeulders, A. C. A. Marijnissen, Koen L. Vincken:
An Intelligent Interactive Segmentation Method for the Joint Space in Osteoarthritic Ankles. IPMI 1999: 394-399 - 1997
- [c1]Sílvia D. Olabarriaga, Arnold W. M. Smeulders:
Setting the Mind for Intelligent Interactive Segmentation: Overview, Requirements, and Framework. IPMI 1997: 417-422 - 1996
- [j1]Sílvia Delgado Olabarriaga:
Tricotomia e a reprodução de cores em computador. RITA 3(1): 91-110 (1996)
Coauthor Index
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