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Travis S. Johnson
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2020 – today
- 2022
- [j6]Yusong Liu
, Tongxin Wang, Ben Duggan
SPCS: a spatial and pattern combined smoothing method for spatial transcriptomic expression. Briefings Bioinform. 23(3) (2022) - [j5]Michael F. Sharpnack, Travis S. Johnson, Robert Chalkley, Zhi Han, David Carbone, Kun Huang, Kai He
TSAFinder: exhaustive tumor-specific antigen detection with RNAseq. Bioinform. 38(9): 2422-2427 (2022) - [j4]Elham Jafari
AIscEA: unsupervised integration of single-cell gene expression and chromatin accessibility via their biological consistency. Bioinform. 38(23): 5236-5244 (2022) - 2020
- [j3]Achal Awasthi, Shenglong Tan, Travis S. Johnson, Xiaokui-Molly Mo, Kunjie Fan, Yan Zhang:
PgenePapers: a novel database and search tools of reported regulatory pseudogenes. Int. J. Comput. Biol. Drug Des. 13(5/6): 504-519 (2020)
2010 – 2019
- 2019
- [j2]Travis S. Johnson
LAmbDA: label ambiguous domain adaptation dataset integration reduces batch effects and improves subtype detection. Bioinform. 35(22): 4696-4706 (2019) - [j1]Zachary B. Abrams, Travis S. Johnson, Kun Huang, Philip R. O. Payne
A protocol to evaluate RNA sequencing normalization methods. BMC Bioinform. 20-S(24): 679 (2019) - [c3]Tongxin Wang, Travis S. Johnson, Jie Zhang, Kun Huang:
Topological Methods for Visualization and Analysis of High Dimensional Single-Cell RNA Sequencing Data. PSB 2019: 350-361 - 2018
- [c2]Travis S. Johnson, Sihong Li, Jonathan R. Kho, Kun Huang, Yan Zhang:
Network analysis of pseudogene-gene relationships: from pseudogene evolution to their functional potentials. PSB 2018: 536-547 - 2017
- [c1]Travis S. Johnson, Zachary B. Abrams, Yan Zhang, Kun Huang:
Mapping Neuronal Cell Types Using Integrative Multi-Species Modeling of Human and Mouse Single Cell RNA Sequencing. PSB 2017: 599-610
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