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Mirza Faisal Beg
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2020 – today
- 2024
- [i15]Varun Akella, Razeyeh Bagherinasab, Jia Ming Li, Long Nguyen, Vincent Tze Yang Chow, Hyunwoo Lee, Karteek Popuri, Mirza Faisal Beg:
Automated Body Composition Analysis Using DAFS Express on 2D MRI Slices at L3 Vertebral Level. CoRR abs/2409.06942 (2024) - 2023
- [j28]Cédric Beaulac, Sidi Wu, Erin Gibson, Michelle F. Miranda
, Jiguo Cao, Leno Rocha, Mirza Faisal Beg, Farouk S. Nathoo:
Neuroimaging feature extraction using a neural network classifier for imaging genetics. BMC Bioinform. 24(1): 271 (2023) - [j27]Shuo Chen
Segmentation-guided domain adaptation and data harmonization of multi-device retinal optical coherence tomography using cycle-consistent generative adversarial networks. Comput. Biol. Medicine 159: 106595 (2023) - [i14]Timothy T. L. Yu, Da Ma, Jayden Cole, Myeong Jin Ju, Mirza Faisal Beg, Marinko V. Sarunic:
Spectral Bandwidth Recovery of Optical Coherence Tomography Images using Deep Learning. CoRR abs/2301.00504 (2023) - 2022
- [j26]Da Ma
Clinical explainable differential diagnosis of polypoidal choroidal vasculopathy and age-related macular degeneration using deep learning. Comput. Biol. Medicine 143: 105319 (2022) - [j25]Evangeline Yee, Da Ma, Karteek Popuri, Shuo Chen, Hyunwoo Lee, Vincent Chow, Cydney Ma, Lei Wang, Mirza Faisal Beg
3D hemisphere-based convolutional neural network for whole-brain MRI segmentation. Comput. Medical Imaging Graph. 95: 102000 (2022) - [j24]Haolun Shi, Yuping Yang, Liangliang Wang
Two-Dimensional Functional Principal Component Analysis for Image Feature Extraction. J. Comput. Graph. Stat. 31(4): 1127-1140 (2022) - [j23]Alexei Taylor, Fengqing (Zoe) Zhang
Investigating the temporal pattern of neuroimaging-based brain age estimation as a biomarker for Alzheimer's Disease related neurodegeneration. NeuroImage 263: 119621 (2022) - [i13]Ghazal Mirabnahrazam, Da Ma, Sieun Lee, Karteek Popuri, Hyunwoo Lee, Jiguo Cao, Lei Wang, James E. Galvin, Mirza Faisal Beg, Alzheimer's Disease Neuroimaging Initiative:
Machine Learning Based Multimodal Neuroimaging Genomics Dementia Score for Predicting Future Conversion to Alzheimer's Disease. CoRR abs/2203.05707 (2022) - [i12]Ghazal Mirabnahrazam, Da Ma, Cédric Beaulac, Sieun Lee, Karteek Popuri, Hyunwoo Lee, Jiguo Cao, James E. Galvin, Lei Wang, Mirza Faisal Beg, Alzheimer's Disease Neuroimaging Initiative:
Predicting Time-to-conversion for Dementia of Alzheimer's Type using Multi-modal Deep Survival Analysis. CoRR abs/2205.01188 (2022) - [i11]Cédric Beaulac, Sidi Wu, Erin Gibson, Michelle F. Miranda, Jiguo Cao, Leno Rocha, Mirza Faisal Beg
Neuroimaging Feature Extraction using a Neural Network Classifier for Imaging Genetics. CoRR abs/2207.10794 (2022) - [i10]Shuo Chen, Da Ma, Sieun Lee, Timothy T. L. Yu, Gavin Xu, Donghuan Lu, Karteek Popuri, Myeong Jin Ju, Marinko V. Sarunic, Mirza Faisal Beg
Segmentation-guided Domain Adaptation and Data Harmonization of Multi-device Retinal Optical Coherence Tomography using Cycle-Consistent Generative Adversarial Networks. CoRR abs/2208.14635 (2022) - 2021
- [j22]Da Ma, Donghuan Lu, Shuo Chen, Morgan Heisler, Setareh Dabiri, Sieun Lee, Hyunwoo Lee
LF-UNet - A novel anatomical-aware dual-branch cascaded deep neural network for segmentation of retinal layers and fluid from optical coherence tomography images. Comput. Medical Imaging Graph. 94: 101988 (2021) - [c23]Timothy T. L. Yu, Da Ma, Jayden Cole, MyeongJin Ju, Mirza Faisal Beg, Marinko V. Sarunic:
Spectral Bandwidth Recovery of Optical Coherence Tomography Images using Deep Learning. ISPA 2021: 67-71 - [i9]Da Ma, Vincent Chow, Karteek Popuri, Mirza Faisal Beg:
Comprehensive Validation of Automated Whole Body Skeletal Muscle, Adipose Tissue, and Bone Segmentation from 3D CT images for Body Composition Analysis: Towards Extended Body Composition. CoRR abs/2106.00652 (2021) - [i8]Ricky Chen, Timothy T. L. Yu, Gavin Xu, Da Ma, Marinko V. Sarunic, Mirza Faisal Beg:
Domain Adaptation via CycleGAN for Retina Segmentation in Optical Coherence Tomography. CoRR abs/2107.02345 (2021) - [i7]Da Ma, Donghuan Lu, Karteek Popuri, Mirza Faisal Beg:
Differential Diagnosis of Frontotemporal Dementia and Alzheimer's Disease using Generative Adversarial Network. CoRR abs/2109.05627 (2021) - 2020
- [j21]Setareh Dabiri, Karteek Popuri, Cydney Ma, Vincent Chow, Elizabeth M. Cespedes Feliciano, Bette J. Caan, Vickie E. Baracos, Mirza Faisal Beg
Deep learning method for localization and segmentation of abdominal CT. Comput. Medical Imaging Graph. 85: 101776 (2020) - [j20]Da Ma
Substantially thinner internal granular layer and reduced molecular layer surface in the cerebellar cortex of the Tc1 mouse model of down syndrome - a comprehensive morphometric analysis with active staining contrast-enhanced MRI. NeuroImage 223: 117271 (2020) - [c22]Da Ma, Donghuan Lu, Morgan Heisler, Setareh Dabiri, Sieun Lee, Gavin Weiguang Ding, Marinko V. Sarunic, Mirza Faisal Beg:
Cascade Dual-branch Deep Neural Networks for Retinal Layer and fluid Segmentation of Optical Coherence Tomography Incorporating Relative Positional Map. MIDL 2020: 493-502 - [i6]Julian Lo, Morgan Heisler, Vinicius Vanzan, Sonja Karst, Ivana Zadro Matovinovic, Sven Loncaric, Eduardo V. Navajas, Mirza Faisal Beg, Marinko V. Sarunic:
Microvasculature Segmentation and Inter-capillary Area Quantification of the Deep Vascular Complex using Transfer Learning. CoRR abs/2003.09033 (2020)
2010 – 2019
- 2019
- [j19]Setareh Dabiri, Karteek Popuri, Elizabeth M. Cespedes Feliciano
Muscle segmentation in axial computed tomography (CT) images at the lumbar (L3) and thoracic (T4) levels for body composition analysis. Comput. Medical Imaging Graph. 75: 47-55 (2019) - [j18]Donghuan Lu
Deep-learning based multiclass retinal fluid segmentation and detection in optical coherence tomography images using a fully convolutional neural network. Medical Image Anal. 54: 100-110 (2019) - [j17]Hrvoje Bogunovic
RETOUCH: The Retinal OCT Fluid Detection and Segmentation Benchmark and Challenge. IEEE Trans. Medical Imaging 38(8): 1858-1874 (2019) - [i5]Morgan Heisler, Forson Chan, Zaid Mammo, Chandrakumar Balaratnasingam, Pavle Prentasic, Gavin Docherty, MyeongJin Ju, Sanjeeva Rajapakse, Sieun Lee, Andrew B. Merkur, Andrew W. Kirker, David A. Albiani, David Maberley, K. Bailey Freund, Mirza Faisal Beg, Sven Loncaric, Marinko V. Sarunic, Eduardo V. Navajas:
Deep learning vessel segmentation and quantification of the foveal avascular zone using commercial and prototype OCT-A platforms. CoRR abs/1909.11289 (2019) - [i4]Donghuan Lu, Morgan Heisler, Da Ma, Setareh Dabiri, Sieun Lee, Gavin Weiguang Ding, Marinko V. Sarunic, Mirza Faisal Beg:
Cascaded Deep Neural Networks for Retinal Layer Segmentation of Optical Coherence Tomography with Fluid Presence. CoRR abs/1912.03418 (2019) - 2018
- [j16]Donghuan Lu
Multiscale deep neural network based analysis of FDG-PET images for the early diagnosis of Alzheimer's disease. Medical Image Anal. 46: 26-34 (2018) - 2017
- [j15]Sieun Lee
Atlas-based shape analysis and classification of retinal optical coherence tomography images using the functional shape (fshape) framework. Medical Image Anal. 35: 570-581 (2017) - [c21]Donghuan Lu, Gavin Weiguang Ding, Andrew B. Merkur, Marinko V. Sarunic
Multiple instance learning for age-related macular degeneration diagnosis in optical coherence tomography images. ISBI 2017: 139-142 - [c20]Amanmeet Garg, Donghuan Lu, Karteek Popuri, Mirza Faisal Beg
Brain geometry persistent homology marker for Parkinson's disease. ISBI 2017: 525-528 - [c19]Amanmeet Garg, Donghuan Lu, Karteek Popuri, Mirza Faisal Beg
Topology of Surface Displacement Shape Feature in Subcortical Structures. GRAIL/MFCA/MICGen@MICCAI 2017: 21-30 - [i3]Donghuan Lu, Morgan Heisler, Sieun Lee, Gavin Weiguang Ding, Marinko V. Sarunic, Mirza Faisal Beg:
Retinal Fluid Segmentation and Detection in Optical Coherence Tomography Images using Fully Convolutional Neural Network. CoRR abs/1710.04778 (2017) - [i2]Donghuan Lu, Karteek Popuri, Gavin Weiguang Ding, Rakesh Balachandar, Mirza Faisal Beg:
Multimodal and Multiscale Deep Neural Networks for the Early Diagnosis of Alzheimer's Disease using structural MR and FDG-PET images. CoRR abs/1710.04782 (2017) - [i1]Karteek Popuri, Rakesh Balachandar, Kathryn I. Alpert, Donghuan Lu, Mahadev Bhalla, Ian Mackenzie, Robin Ging-Yuek Hsiung, Lei Wang, Mirza Faisal Beg:
Development and validation of a novel dementia of Alzheimer's type (DAT) score based on metabolism FDG-PET imaging. CoRR abs/1711.00671 (2017) - 2016
- [c18]Amanmeet Garg, Ruth E. Grunau
Surface displacement based shape analysis of central brain structures in preterm-born children. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging 2016: 97880H - 2015
- [j14]Sieun Lee, Evgeniy Lebed, Marinko V. Sarunic
Exact Surface Registration of Retinal Surfaces From 3-D Optical Coherence Tomography Images. IEEE Trans. Biomed. Eng. 62(2): 609-617 (2015) - 2014
- [j13]Gavin Weiguang Ding, Eric Lin
Automatic Cycle Averaging for Denoising Approximately Periodic Spatiotemporal Signals. IEEE Trans. Medical Imaging 33(8): 1749-1759 (2014) - 2013
- [j12]Andy Bo Wu, Evgeniy Lebed, Marinko Sarunic
Quantitative Evaluation of Transform Domains for Compressive Sampling-Based Recovery of Sparsely Sampled Volumetric OCT Images. IEEE Trans. Biomed. Eng. 60(2): 470-478 (2013) - [j11]Ali R. Khan
Multistructure Large Deformation Diffeomorphic Brain Registration. IEEE Trans. Biomed. Eng. 60(2): 544-553 (2013) - [j10]Evgeniy Lebed, Claudia Jacova
Novel Surface-Smoothing Based Local Gyrification Index. IEEE Trans. Medical Imaging 32(4): 660-669 (2013) - [c17]Gavin Weiguang Ding, Eric Lin
On identification of sinoatrial node in zebrafish heart based on functional time series from optical mapping. EMBC 2013: 6518-6521 - [c16]Gavin Weiguang Ding, Mei Young, Serge Bourgault, Sieun Lee, David A. Albiani, Andrew W. Kirker, Farzin Forooghian, Marinko V. Sarunic
Automatic detection of subretinal fluid and sub-retinal pigment epithelium fluid in optical coherence tomography images. EMBC 2013: 7388-7391 - [c15]Pradeep Reddy Raamana
Thickness NETwork (ThickNet) Features for the Detection of Prodromal AD. MLMI 2013: 114-122 - 2012
- [j9]Yue Cui, Wei Wen
Automated detection of amnestic mild cognitive impairment in community-dwelling elderly adults: A combined spatial atrophy and white matter alteration approach. NeuroImage 59(2): 1209-1217 (2012) - 2011
- [j8]Elvan Ceyhan, Mirza Faisal Beg
Quantization and analysis of hippocampal morphometric changes due to dementia of Alzheimer type using metric distances based on large deformation diffeomorphic metric mapping. Comput. Medical Imaging Graph. 35(4): 275-293 (2011) - [j7]Ali R. Khan
Optimal weights for local multi-atlas fusion using supervised learning and dynamic information (SuperDyn): Validation on hippocampus segmentation. NeuroImage 56(1): 126-139 (2011) - [c14]Jing Wan, Sungeun Kim, Mark Inlow, Kwangsik Nho, Shanker Swaminathan
Hippocampal Surface Mapping of Genetic Risk Factors in AD via Sparse Learning Models. MICCAI (2) 2011: 376-383 - [c13]Jingyun Chen
Momentum-based morphometric analysis with application to Parkinson's disease. Medical Imaging: Image-Guided Procedures 2011: 79640S - 2010
- [j6]Eli Gibson
Optic Nerve Head Registration Via Hemispherical Surface and Volume Registration. IEEE Trans. Biomed. Eng. 57(10): 2592-2595 (2010)
2000 – 2009
- 2009
- [j5]Mirza Faisal Beg
External landmark and head-shape-based functional data normalization. Comput. Medical Imaging Graph. 33(7): 501-509 (2009) - [c12]Ali R. Khan
Robust Atlas-Based Brain Segmentation Using Multi-structure Confidence-Weighted Registration. MICCAI (1) 2009: 549-557 - [c11]Eli Gibson
A Combined Surface And VOlumetric Registration (SAVOR) Framework to Study Cortical Biomarkers and Volumetric Imaging Data. MICCAI (1) 2009: 713-720 - [c10]Jingyun Chen
Freesurfer-initialized large deformation diffeomorphic metric mapping with application to Parkinson's disease. Medical Imaging: Image Processing 2009: 725931 - 2008
- [j4]Ali R. Khan
FreeSurfer-initiated fully-automated subcortical brain segmentation in MRI using Large Deformation Diffeomorphic Metric Mapping. NeuroImage 41(3): 735-746 (2008) - [c9]Ryan Dickie, Mirza Faisal Beg
Two novel methods for computing the 3D cardiac midwall. ISBI 2008: 955-958 - [c8]Ali R. Khan
Representation of time-varying shapes in the large deformation diffeomorphic framework. ISBI 2008: 1521-1524 - 2007
- [j3]Lei Wang
Large Deformation Diffeomorphism and Momentum Based Hippocampal Shape Discrimination in Dementia of the Alzheimer type. IEEE Trans. Medical Imaging 26(4): 462-470 (2007) - [j2]Mirza Faisal Beg
Symmetric Data Attachment Terms for Large Deformation Image Registration. IEEE Trans. Medical Imaging 26(9): 1179-1189 (2007) - [c7]Mirza Faisal Beg
Consistent realignment of 3D diffusion tensor MRI eigenvectors. Medical Imaging: Image Processing 2007: 651242 - 2006
- [c6]Mirza Faisal Beg, Ali R. Khan:
Computing an average anatomical atlas using LDDMM and geodesic shooting. ISBI 2006: 1116-1119 - 2005
- [j1]Mirza Faisal Beg
Computing Large Deformation Metric Mappings via Geodesic Flows of Diffeomorphisms. Int. J. Comput. Vis. 61(2): 139-157 (2005) - [c5]Jorge Jovicich, Mirza Faisal Beg, Steve Pieper, Carey E. Priebe, Michael I. Miller, Randy L. Buckner, Bruce R. Rosen:
Biomedical Informatics Research Network: Integrating Multi-Site Neuroimaging Data Acquisition, Data Sharing and Brain Morphometric Processing. CBMS 2005: 288-293 - [c4]Ali R. Khan
Semi-automated Basal Ganglia Segmentation Using Large Deformation Diffeomorphic Metric Mapping. MICCAI 2005: 238-245 - [c3]Gregory Golds, Mirza Faisal Beg
Computing the thickness of the ventricular heart wall from 3D MRI images. Medical Imaging: Image Processing 2005 - 2003
- [c2]Mirza Faisal Beg
The Euler-Lagrange Equation for Interpolating Sequence of Landmark Datasets. MICCAI (2) 2003: 918-925 - 2002
- [c1]Mirza Faisal Beg
Computational anatomy: computing metrics on anatomical shapes. ISBI 2002: 341-344
Coauthor Index
Marinko Sarunic
aka: Marinko V. Sarunic
aka: Marinko V. Sarunic
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