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John A. Bachman
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2020 – today
- 2022
- [j5]Helena Balabin
, Charles Tapley Hoyt
STonKGs: a sophisticated transformer trained on biomedical text and knowledge graphs. Bioinform. 38(6): 1648-1656 (2022) - [c2]Helena Balabin, Charles Tapley Hoyt, Benjamin M. Gyori, John A. Bachman, Alpha Tom Kodamullil, Martin Hofmann-Apitius, Daniel Domingo-Fernández:
ProtSTonKGs: A Sophisticated Transformer Trained on Protein Sequences, Text, and Knowledge Graphs. SWAT4HCLS 2022: 103-107 - 2020
- [j4]Albert Steppi
Adeft: Acromine-based Disambiguation of Entities from Text with applications to the biomedical literature. J. Open Source Softw. 5(45): 1708 (2020)
2010 – 2019
- 2019
- [j3]Charles Tapley Hoyt
Re-curation and rational enrichment of knowledge graphs in Biological Expression Language. Database J. Biol. Databases Curation 2019: baz068 (2019) - [j2]Petar V. Todorov
INDRA-IPM: interactive pathway modeling using natural language with automated assembly. Bioinform. 35(21): 4501-4503 (2019) - [c1]Rebecca Sharp, Adarsh Pyarelal, Benjamin M. Gyori, Keith Alcock
Eidos, INDRA, & Delphi: From Free Text to Executable Causal Models. NAACL-HLT (Demonstrations) 2019: 42-47 - 2018
- [j1]John A. Bachman, Benjamin M. Gyori, Peter K. Sorger
FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining. BMC Bioinform. 19(1): 248:1-248:14 (2018)
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