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Matthew B. Baker

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2020 – today

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2022
[c12]
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Wael R. Elwasif, Thomas J. Naughton, Matthew B. Baker:
Towards a Standard Process Management Infrastructure for Workflows Using Python. PDCAT 2022: 523-534
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Stephen W. Poole, Oscar R. Hernandez, Matthew B. Baker, Tony Curtis:
OpenSHMEM and Related Technologies. OpenSHMEM in the Era of Exascale and Smart Networks - 8th Workshop on OpenSHMEM and Related Technologies, OpenSHMEM 2021, Virtual Event, September 14-16, 2021, Revised Selected Papers. Lecture Notes in Computer Science 13159, Springer 2022, ISBN 978-3-031-04887-6 [contents]
2021
[j4]
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Josh Vincent Vermaas, Ada Sedova, Matthew B. Baker, Swen Boehm, David M. Rogers, Jeff Larkin, Jens Glaser, Micholas Dean Smith, Oscar R. Hernandez, Jeremy C. Smith:
Supercomputing Pipelines Search for Therapeutics Against COVID-19. Comput. Sci. Eng. 23(1): 7-16 (2021)
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Jens Glaser, Josh Vincent Vermaas, David M. Rogers, Jeff Larkin, Scott LeGrand, Swen Boehm, Matthew B. Baker, Aaron Scheinberg, Andreas F. Tillack, Mathialakan Thavappiragasam, Ada Sedova, Oscar R. Hernandez:
High-throughput virtual laboratory for drug discovery using massive datasets. Int. J. High Perform. Comput. Appl. 35(5) (2021)
[c11]
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Jens Glaser, Felipe Aramburú, William Malpica, Benjamín Hernández, Matthew B. Baker, Rodrigo Aramburú:
Scaling SQL to the Supercomputer for Interactive Analysis of Simulation Data. SMC 2021: 327-339
2020
[j2]
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Atanu Acharya, Rupesh Agarwal, Matthew B. Baker, Jérôme Baudry, Debsindhu Bhowmik, Swen Böhm, Kendall G. Byler, Sam Yen-Chi Chen, Leighton Coates, Connor J. Cooper, Omar Demerdash, Isabella Daidone, John D. Eblen, Sally R. Ellingson, Stefano Forli, Jens Glaser, James C. Gumbart, John Gunnels, Oscar R. Hernandez, Stephan Irle, Daniel W. Kneller, Andrey Kovalevsky, Jeffrey M. Larkin, Travis J. Lawrence, Scott LeGrand, Shih-Hsien Liu, Julie C. Mitchell, Gilchan Park, Jerry M. Parks, Anna Pavlova, Loukas Petridis, Duncan Poole, Line Pouchard, Arvind Ramanathan, David M. Rogers, Diogo Santos-Martins, Aaron Scheinberg, Ada Sedova, Yue Shen, Jeremy C. Smith, Micholas Dean Smith, Carlos Soto, Aristides Tsaris, Mathialakan Thavappiragasam, Andreas F. Tillack, Josh Vincent Vermaas, Van Quan Vuong, Junqi Yin, Shinjae Yoo, Mai Zahran, Laura Zanetti Polzi:
Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19. J. Chem. Inf. Model. 60(12): 5832-5852 (2020)
[c10]
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Matthew B. Baker, Oscar R. Hernandez, Jeffrey Young:
Co-designing OpenMP Features Using OMPT and Simulation Tools. IWOMP 2020: 181-194

2010 – 2019

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2019
[j1]
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Verónica G. Vergara Larrea, Michael J. Brim, Wayne Joubert, Swen Boehm, Matthew B. Baker, Oscar R. Hernandez, Sarp Oral, James Simmons, Don Maxwell:
Are we witnessing the spectre of an HPC meltdown? Concurr. Comput. Pract. Exp. 31(16) (2019)
[c9]
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John R. Ossyra, Ada Sedova, Matthew B. Baker, Jeremy C. Smith:
Highly Interactive, Steered Scientific Workflows on HPC Systems: Optimizing Design Solutions. ISC Workshops 2019: 514-527
2018
[c8]
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Thomas J. Naughton, Ferrol Aderholdt, Matthew B. Baker, Swaroop Pophale, Manjunath Gorentla Venkata, Neena Imam:
Oak Ridge OpenSHMEM Benchmark Suite. OpenSHMEM 2018: 202-216
2017
[c7]
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Swen Boehm, Swaroop Pophale, Matthew B. Baker, Manjunath Gorentla Venkata:
Merged Requests for Better Performance and Productivity in Multithreaded OpenSHMEM. OpenSHMEM 2017: 35-49
[c6]
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Aurélien Bouteiller, Swaroop Pophale, Swen Boehm, Matthew B. Baker, Manjunath Gorentla Venkata:
Evaluating Contexts in OpenSHMEM-X Reference Implementation. OpenSHMEM 2017: 50-62
2016
[c5]
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Matthew B. Baker, Ferrol Aderholdt, Manjunath Gorentla Venkata, Pavel Shamis:
OpenSHMEM-UCX: Evaluation of UCX for Implementing OpenSHMEM Programming Model. OpenSHMEM 2016: 114-130
2015
[c4]
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  - conf/hoti/ShamisVLBHIDSGL15
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Pavel Shamis, Manjunath Gorentla Venkata, M. Graham Lopez, Matthew B. Baker, Oscar R. Hernandez, Yossi Itigin, Mike Dubman, Gilad Shainer, Richard L. Graham, Liran Liss, Yiftah Shahar, Sreeram Potluri, Davide Rossetti, Donald Becker, Duncan Poole, Christopher Lamb, Sameer Kumar, Craig B. Stunkel, George Bosilca, Aurélien Bouteiller:
UCX: An Open Source Framework for HPC Network APIs and Beyond. Hot Interconnects 2015: 40-43
[c3]
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Sreeram Potluri, Davide Rossetti, Donald Becker, Duncan Poole, Manjunath Gorentla Venkata, Oscar R. Hernandez, Pavel Shamis, M. Graham Lopez, Matthew B. Baker, Wendy Poole:
Exploring OpenSHMEM Model to Program GPU-based Extreme-Scale Systems. OpenSHMEM 2015: 18-35
[c2]
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Matthew B. Baker, Aaron Welch, Manjunath Gorentla Venkata:
Parallelizing the Smith-Waterman Algorithm Using OpenSHMEM and MPI-3 One-Sided Interfaces. OpenSHMEM 2015: 178-191
2014
[c1]
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Matthew B. Baker, Swaroop Pophale, Jean-Charles Vasnier, Haoqiang Jin, Oscar R. Hernandez:
Hybrid Programming Using OpenSHMEM and OpenACC. OpenSHMEM 2014: 74-89

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