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Salem Malikic
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2020 – today
- 2024
- [c4]Chih Hao Wu, Suraj Joshi, Welles Robinson, Paul F. Robbins, Russell Schwartz, Süleyman Cenk Sahinalp, Salem Malikic:
Determining Optimal Placement of Copy Number Aberration Impacted Single Nucleotide Variants in a Tumor Progression History. RECOMB 2024: 438-443 - 2022
- [j10]Can Kizilkale, Farid Rashidi Mehrabadi, Erfan Sadeqi Azer, Eva Pérez-Guijarro, Kerrie Marie, Maxwell P. Lee, Chi-Ping Day, Glenn Merlino, Funda Ergün, Aydin Buluç, Süleyman Cenk Sahinalp, Salem Malikic:
Fast intratumor heterogeneity inference from single-cell sequencing data. Nat. Comput. Sci. 2(9): 577-583 (2022) - [i1]Zlatan Ajanovic, Emina Alickovic, Aida Brankovic, Sead Delalic, Eldar Kurtic, Salem Malikic, Adnan Mehonic, Hamza Merzic, Kenan Sehic, Bahrudin Trbalic:
Vision for Bosnia and Herzegovina in Artificial Intelligence Age: Global Trends, Potential Opportunities, Selected Use-cases and Realistic Goals. CoRR abs/2209.03990 (2022) - 2021
- [j9]Salem Malikic, Farid Rashidi Mehrabadi, Erfan Sadeqi Azer, Mohammad Haghir Ebrahim-Abadi, Süleyman Cenk Sahinalp:
Studying the History of Tumor Evolution from Single-Cell Sequencing Data by Exploring the Space of Binary Matrices. J. Comput. Biol. 28(9): 857-879 (2021) - 2020
- [j8]Erfan Sadeqi Azer, Farid Rashidi Mehrabadi, Salem Malikic, Xuan Cindy Li, Osnat Bartok, Kevin Litchfield, Ronen Levy, Yardena Samuels, Alejandro A. Schäffer, E. Michael Gertz, Chi-Ping Day, Eva Pérez-Guijarro, Kerrie Marie, Maxwell P. Lee, Glenn Merlino, Funda Ergün, Süleyman Cenk Sahinalp:
PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem. Bioinform. 36(Supplement-1): i169-i176 (2020) - [j7]Ermin Hodzic, Raunak Shrestha, Salem Malikic, Colin C. Collins, Kevin Litchfield, Samra Turajlic, Süleyman Cenk Sahinalp:
Identification of conserved evolutionary trajectories in tumors. Bioinform. 36(Supplement-1): i427-i435 (2020) - [j6]Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo:
The evolutionary history of 2,658 cancers. Nat. 578(7793): 122-128 (2020)
2010 – 2019
- 2019
- [j5]Nikolai Karpov, Salem Malikic, Md. Khaledur Rahman, Süleyman Cenk Sahinalp:
A multi-labeled tree dissimilarity measure for comparing "clonal trees" of tumor progression. Algorithms Mol. Biol. 14(1): 17:1-17:18 (2019) - [j4]Sahand Khakabimamaghani, Salem Malikic, Jeffrey Tang, Dujian Ding, Ryan D. Morin, Leonid Chindelevitch, Martin Ester:
Collaborative intra-tumor heterogeneity detection. Bioinform. 35(14): i379-i388 (2019) - 2018
- [c3]Salem Malikic, Katharina Jahn, Jack Kuipers, Süleyman Cenk Sahinalp, Niko Beerenwinkel:
Integrative Inference of Subclonal Tumour Evolution from Single-Cell and Bulk Sequencing Data. RECOMB 2018: 269-270 - [c2]Nikolai Karpov, Salem Malikic, Md. Khaledur Rahman, Süleyman Cenk Sahinalp:
A Multi-labeled Tree Edit Distance for Comparing "Clonal Trees" of Tumor Progression. WABI 2018: 22:1-22:19 - 2017
- [j3]Nilgun Donmez, Salem Malikic, Alexander W. Wyatt, Martin E. Gleave, Colin C. Collins, Süleyman Cenk Sahinalp:
Clonality Inference from Single Tumor Samples Using Low-Coverage Sequence Data. J. Comput. Biol. 24(6): 515-523 (2017) - 2016
- [c1]Nilgun Donmez, Salem Malikic, Alexander W. Wyatt, Martin E. Gleave, Colin C. Collins, Süleyman Cenk Sahinalp:
Clonality Inference from Single Tumor Samples Using Low Coverage Sequence Data. RECOMB 2016: 83-94 - 2015
- [j2]Salem Malikic, Andrew W. McPherson, Nilgun Donmez, S. Cenk Sahinalp:
Clonality inference in multiple tumor samples using phylogeny. Bioinform. 31(9): 1349-1356 (2015) - [j1]Ibrahim Numanagic, Salem Malikic, Victoria M. Pratt, Todd C. Skaar, David A. Flockhart, Süleyman Cenk Sahinalp:
Cypiripi: exact genotyping of CYP2D6 using high-throughput sequencing data. Bioinform. 31(12): 27-34 (2015)
Coauthor Index
aka: S. Cenk Sahinalp
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