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Scott L. DuVall
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2020 – today
- 2023
- [j19]Anna Ostropolets, Yasser Albogami, Mitchell Conover, Juan M. Banda, William A. Baumgartner Jr., Clair Blacketer, Priyamvada Desai, Scott L. DuVall, Stephen P. Fortin, James P. Gilbert, Asieh Golozar, Joshua Ide, Andrew S. Kanter, David M. Kern, Chungsoo Kim, Lana Y. H. Lai, Chenyu Li, Feifan Liu, Kristine E. Lynch, Evan Minty, Maria Inês Neves, Ding Quan Ng, Tontel Obene, Victor Pera, Nicole Pratt, Gowtham Rao, Nadav Rappoport, Ines Reinecke, Paola Saroufim, Azza Shoaibi, Katherine Simon, Marc A. Suchard, Joel N. Swerdel, Erica A. Voss, James Weaver, Linying Zhang, George Hripcsak, Patrick B. Ryan:
Reproducible variability: assessing investigator discordance across 9 research teams attempting to reproduce the same observational study. J. Am. Medical Informatics Assoc. 30(5): 859-868 (2023) - [j18]Tsung-Ting Kuo, Anh Pham, Maxim E. Edelson, Jihoon Kim, Jason Chan, Yash Gupta, Lucila Ohno-Machado, David M. Anderson, Chandrasekar Balacha, Tyler Bath, Sally L. Baxter, Andrea Becker-Pennrich, Douglas S. Bell, Elmer V. Bernstam, Ngan Chau, Michele E. Day, Jason N. Doctor, Scott L. DuVall, Robert El-Kareh, Renato Florian, Robert W. Follett, Benjamin P. Geisler, Alessandro Ghigi, Assaf Gottlieb, Ludwig Christian G. Hinske, Zhaoxian Hu, Diana Ir, Xiaoqian Jiang, Katherine K. Kim, Tara K. Knight, Jejo D. Koola, Nelson Lee, Ulrich Mansmann, Michael E. Matheny, Daniella Meeker, Zongyang Mou, Larissa Neumann, Nghia H. Nguyen, Nick Anderson, Eunice Park, Paulina Paul, Mark J. Pletcher, Kai W. Post, Clemens Rieder, Clemens Scherer, Lisa M. Schilling, Andrey Soares, Spencer L. SooHoo, Ekin Soysal, Steven Covington, Brian Tep, Brian Toy, Baocheng Wang, Zhen R. Wu, Hua Xu, Yong K. Choi, Kai Zheng, Yujia Zhou, Rachel A Zucker:
Blockchain-enabled immutable, distributed, and highly available clinical research activity logging system for federated COVID-19 data analysis from multiple institutions. J. Am. Medical Informatics Assoc. 30(6): 1167-1178 (2023) - [j17]Qiwei Gan, Mengke Hu, Kelly S. Peterson, Hannah Eyre, Patrick R. Alba, Annie E. Bowles, Johnathan C. Stanley, Scott L. DuVall, Jianlin Shi:
A deep learning approach for medication disposition and corresponding attributes extraction. J. Biomed. Informatics 143: 104391 (2023) - [c62]Scott L. DuVall, Craig G. Parker, Amanda R. Shields, Patrick R. Alba, Julie A. Lynch, Michael E. Matheny, Aaron W. C. Kamauu:
Toward Real-World Reproducibility: Verifying Value Sets for Clinical Research. MedInfo 2023: 164-168 - [c61]Patrick R. Alba, Qiwei Gan, Mengke Hu, Shu-Hong Zhu, Scott E. Sherman, Scott L. DuVall, Mike Conway:
Development of a Natural Language Processing System to Identify Clinical Documentation of Electronic Cigarette Use. MedInfo 2023: 659-663 - [c60]Annie E. Bowles, Cris Perez, Anil Vachani, Jennifer Steltz, Brent Rose, Alex K. Bryant, Hannah Eyre, Scott L. DuVall, Julie A. Lynch, Patrick R. Alba:
An NLP Framework for the Extraction of Concept Measurements from Radiology and Pathology Notes. MedInfo 2023: 1446-1447 - 2022
- [j16]Jorie M. Butler, Bryan Smith Gibson, Olga V. Patterson, Laura J. Damschroder, Corrinne H. Halls, Daniel W. Denhalter, Matthew H. Samore, Haojia Li, Yue Zhang, Scott L. DuVall:
Clinician documentation of patient centered care in the electronic health record. BMC Medical Informatics Decis. Mak. 22(1): 65 (2022) - [c59]Hannah Eyre, Scott L. DuVall, Olga V. Patterson:
From Rules to Machine Learning: Upgrading Aging Clinical NLP Systems. AMIA 2022 - [c58]Hannah Eyre, Kristine W. Lynch, Carolyn Gibson, Scott L. DuVall, Olga V. Patterson:
Identifying Menopausal Status with Natural Language Processing. AMIA 2022 - [c57]Brent D. Hill, Kristine W. Lynch, Scott L. DuVall:
Manual Chart Review Train and Inter-Annotator Agreement Plan for a COVID-19 Disease Association Study. AMIA 2022 - [c56]Christopher R. Wilson, Annie E. Bowles, Hannah Eyre, Scott L. DuVall, Olga V. Patterson:
Comprehensive Mapping of Presenting Symptoms in the Emergency Department and Inpatient Setting. AMIA 2022 - 2021
- [c55]Annie E. Bowles, Hannah Eyre, Scott L. DuVall, Olga V. Patterson:
Challenges of comprehensive automatic coding of presenting complaints. AMIA 2021 - [c54]Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto M. Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson:
Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python. AMIA 2021 - [c53]Olga V. Patterson, Hannah Eyre, Kelly S. Peterson, Scott L. DuVall:
From Emergency Department to Admission: mapping reasons for visit and admit diagnosis using Natural Language Processing. AMIA 2021 - [i1]Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto M. Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson:
Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python. CoRR abs/2106.07799 (2021) - 2020
- [j15]Xiao Dong, Jianfu Li, Ekin Soysal, Jiang Bian, Scott L. DuVall, Elizabeth Hanchrow, Hongfang Liu, Kristine E. Lynch, Michael E. Matheny, Karthik Natarajan, Lucila Ohno-Machado, Serguei Pakhomov, Ruth Madeleine Reeves, Amy M. Sitapati, Swapna Abhyankar, Theresa Cullen, Jami Deckard, Xiaoqian Jiang, Robert Murphy, Hua Xu:
COVID-19 TestNorm: A tool to normalize COVID-19 testing names to LOINC codes. J. Am. Medical Informatics Assoc. 27(9): 1437-1442 (2020) - [c52]Hannah Eyre, Olga V. Patterson, Jianlin Shi, Kelly S. Peterson, Alec B. Chapman, Patrick R. Alba, Scott L. DuVall:
Removing barriers to clinical text processing with MedSpaCy. AMIA 2020 - [c51]Olga V. Patterson, Samir Gupta, Andrew Gawron, Tonya Kaltenbach, Ranier Bustamante, Lin Liu, Daniel W. Denhalter, Ashley Earles, Scott L. DuVall:
Linking Polyps to Jars: information loss across colonoscopy and pathology reports. AMIA 2020
2010 – 2019
- 2019
- [j14]Kristine E. Lynch, Stephen A. Deppen, Scott L. DuVall, Benjamin Viernes, Aize Cao, Daniel Park, Elizabeth Hanchrow, Kushan Hewa, Peter Greaves, Michael E. Matheny:
Incrementally Transforming Electronic Medical Records into the Observational Medical Outcomes Partnership Common Data Model: A Multidimensional Quality Assurance Approach. Appl. Clin. Inform. 10(05): 794-803 (2019) - [c50]Jiantao Bian, Hamid Saoudian, Brett R. South, Kristine E. Lynch, Benjamin Viernes, Michael E. Matheny, Scott L. DuVall:
Developing Synthetic VA Healthcare Data in OMOP CDM Model. AMIA 2019 - [c49]Patrick R. Alba, Olga V. Patterson, Joshua S. Richman, Scott L. DuVall:
Automatic Methods to Extract Prescription Status Quality Measures from Unstructured Health Records. MedInfo 2019: 15-19 - [c48]Kristine E. Lynch, Patrick R. Alba, Benjamin Viernes, Scott L. DuVall:
Using Enriched Samples for Semi-Automated Vocabulary Expansion to Identify Rare Events in Clinical Text: Sexual Orientation as a Use Case. MedInfo 2019: 1532-1533 - [c47]Benjamin Viernes, Kristine E. Lynch, Brett R. South, Gregorio Coronado, Scott L. DuVall:
Characterizing VA Users with the OMOP Common Data Model. MedInfo 2019: 1614-1615 - [c46]Scott L. DuVall, Michael E. Matheny, Ildar R. Ibragimov, Trey D. Oats, Jay N. Tucker, Brett R. South, Augie Turano, Hamid Saoudian, Casey Kangas, Keith D. Hofmann, Wendy Funk, Chris Nichols, Albert Bonnema, Louis Ferrucci, Jonathan R. Nebeker:
A Tale of Two Databases: The DoD and VA Infrastructure for Clinical Intelligence (DaVINCI). MedInfo 2019: 1660-1661 - 2018
- [c45]Patrick R. Alba, Scott L. DuVall, Daniel Norvell, Kathryn P. Moore, Joseph M. Czerniecki, Olga V. Patterson:
Ankle Brachial Index Extraction System. AMIA 2018 - [c44]Alec B. Chapman, Patrick R. Alba, Brian T. Bucher, Scott L. DuVall, Olga V. Patterson:
A User-Friendly Interface for Concept Dictionary Expansion Using Word Embeddings and SNOMED-CT. AMIA 2018 - [c43]Scott L. DuVall, Michael E. Matheny, Ildar R. Ibragimov, Trey D. Oats, Jay N. Tucker, Brett R. South, Augie Turano, Hamid Saoudian, Casey Kangas, Keith D. Hofmann, Wendy Funk, Chris Nichols, Albert Bonnema, Louis Ferrucci, Jonathan R. Nebeker:
The Department of Defense (DoD) and Department of Veterans Affairs (VA) Infrastructure for Clinical Intelligence (DaVINCI). AMIA 2018 - [c42]Olga V. Patterson, Lalindra De Silva, Brad Adams, Ryan Cornia, Thomas Ginter, Susan L. Zickmund, Scott L. DuVall:
Towards intuitive NLP: Interactive system for machine teaching. AMIA 2018 - [c41]Kelly S. Peterson, Alec B. Chapman, Patrick R. Alba, Scott L. DuVall, Olga V. Patterson:
Fast and Accurate Adverse Drug Event labeling without a GPU. AMIA 2018 - [c40]Brett R. South, Kristine W. Lynch, Michael E. Matheny, Julie A. Lynch, Olga Efimova, Catherine Chanfreau-Coffinier, Olga V. Patterson, Benjamin Viernes, Scott L. DuVall:
Flipping the Model for Biomedical Informatics Research. AMIA 2018 - [c39]Alec B. Chapman, Kelly S. Peterson, Patrick R. Alba, Scott L. DuVall, Olga V. Patterson:
Hybrid system for adverse drug event detection. Medication and Adverse Drug Event Detection 2018: 16-24 - 2017
- [j13]Olga Efimova, Brygida Berse, Daniel W. Denhalter, Scott L. DuVall, Kelly K. Filipski, Michael Icardi, Michael J. Kelley, Julie A. Lynch:
Clinical decisions surrounding genomic and proteomic testing among United States veterans treated for lung cancer within the Veterans Health Administration. BMC Medical Informatics Decis. Mak. 17(1): 71:1-71:8 (2017) - [c38]Patrick R. Alba, Scott L. DuVall, Terri Elizabeth Workman, Florian Schroeck, Olga V. Patterson:
Pathology Information Extraction in Bladder Cancer Surveillance. AMIA 2017 - [c37]Ryan C. Cornia, Nilla Majahalme, Danne C. Elbers, Svitlana Dipietro, Brian R. Ivie, Brad Adams, Ramana Seerapu, Valmeek Kudesia, Scott L. DuVall:
ProjectFlow: Configurable Clinical Trial Management with Enterprise Data Integration and Point-of-Care Study Support. AMIA 2017 - [c36]Daniel W. Denhalter, Olga V. Patterson, Brian D. Robison, Scott L. DuVall:
Improving the Quality of Clinical Data Extracted from Text. AMIA 2017 - [c35]Olga V. Patterson, Scott L. DuVall:
For the Common Good: Sharing Data Extracted from Text. AMIA 2017 - [c34]Wathsala Widanagamaachchi, Yarden Livnat, Peer-Timo Bremer, Scott L. DuVall, Valerio Pascucci:
Interactive Visualization and Exploration of Patient Progression in a Hospital Setting. AMIA 2017 - 2016
- [c33]Patrick R. Alba, Olga V. Patterson, Benjamin Viernes, Daniel W. Denhalter, Nicole Bailey, Andrew Wilson, Aaron W. C. Kamauu, Scott L. DuVall:
The Super Annotator: A Method of Semi-Automated Rare Event Identification for Large Clinical Data Sets. AMIA 2016 - [c32]Scott L. DuVall, Patrick R. Alba, Olga V. Patterson:
Large Scale Clinical Text Processing and Process Optimization. AMIA 2016 - [c31]Thomas Ginter, Lalindra De Silva, Olga V. Patterson, William Scuba, Wendy W. Chapman, Scott L. DuVall:
VIP: A Framework for Mining Clinical Concepts Using Knowledge Author Ontologies and Apache UIMA. AMIA 2016 - [c30]Olga V. Patterson, Patrick R. Alba, Scott L. DuVall:
An Introduction to Natural Language Processing Methods in Clinical Research. AMIA 2016 - [c29]Olga V. Patterson, Matthew Freiberg, Cynthia Brandt, Scott L. DuVall:
Evaluation of UMLS Term Coverage for Echocardiogram Measures. AMIA 2016 - [c28]Lalindra De Silva, Olga V. Patterson, Scott L. DuVall:
Automatic Extraction of Maximum and Recommended Drug Dosage Information from DailyMed Database. AMIA 2016 - 2015
- [c27]Patrick R. Alba, Scott L. DuVall, Joanne LaFleur, Adam Bress, Olga V. Patterson:
Knowledge Base Acquisition For Rare Concepts Using Manual Bootstrapping. AMIA 2015 - [c26]Fern FitzHenry, Jesse Brannen, Jason N. Denton, Jonathan R. Nebeker, Scott L. DuVall, Freneka F. Minter, Jeffrey Scehnet, Brian C. Sauer, Lucila Ohno-Machado, Michael E. Matheny:
Transforming the National Department of Veterans Affairs Data Warehouse to the OMOP Common Data Model. AMIA 2015 - [c25]Dalia A. Mobarek, Najeebah Bade, Benjamin Viernes, Patricia Nechodom, Frederick R. Rickles, Scott L. DuVall:
Improving Radiology Procedure Identification for Inferior Vena Cava (IVC) Filters using EHR Text. AMIA 2015 - [c24]Olga V. Patterson, Matthew Freiberg, Scott L. DuVall:
Building custom lexicon for a large number of related concepts using templates. AMIA 2015 - [c23]Olga V. Patterson, Tyler B. Forbush, Sameer D. Saini, Stephanie E. Moser, Scott L. DuVall:
Classifying the Indication for Colonoscopy Procedures: A Comparison of NLP Approaches in a Diverse National Healthcare System. MedInfo 2015: 614-618 - [c22]Olga V. Patterson, Makoto Jones, Yiwen Yao, Benjamin Viernes, Patrick R. Alba, Theodore J. Iwashyna, Scott L. DuVall:
Extraction of Vital Signs from Clinical Notes. MedInfo 2015: 1035 - 2014
- [c21]Ryan Cornia, Olga V. Patterson, Thomas Ginter, Scott L. DuVall:
Rapid NLP Development with Leo. AMIA 2014 - [c20]Guy Divita, Qing T. Zeng, Adi V. Gundlapalli, Scott L. DuVall, Jonathan R. Nebeker, Matthew H. Samore:
Sophia: An Expedient UMLS Concept Extraction Annotator. AMIA 2014 - [c19]Scott L. DuVall, Ryan Cornia, Tyler B. Forbush, Corinne Halls, Olga V. Patterson:
Check it with Chex: A Validation Tool for Iterative NLP Development. AMIA 2014 - [c18]Thomas Ginter, Olga V. Patterson, Ryan Cornia, Scott L. DuVall:
Machine Learning Made Easy with Sherlock. AMIA 2014 - [c17]Olga V. Patterson, Scott D. Nelson, Makoto L. Jones, Kimberly Findley, Kevin L. Winthrop, Kevin P. Fennelly, Scott L. DuVall:
Automatic Engine for Mapping Mycobacteriology Reports to SNOMED-CT. AMIA 2014 - 2013
- [j12]Jeffrey P. Ferraro, Hal Daumé III, Scott L. DuVall, Wendy Webber Chapman, Henk Harkema, Peter J. Haug:
Improving performance of natural language processing part-of-speech tagging on clinical narratives through domain adaptation. J. Am. Medical Informatics Assoc. 20(5): 931-939 (2013) - [c16]Adi V. Gundlapalli, Marjorie Carter, Miland N. Palmer, Thomas Ginter, Andrew Redd, Steve Pickard, Shuying Shen, Brett R. South, Guy Divita, Scott L. DuVall, Thien M. Nguyen, Leonard W. D'Avolio, Matthew H. Samore:
Using Natural Language Processing on the Free Text of Clinical Documents to Screen for Evidence of Homelessness Among US Veterans. AMIA 2013 - [c15]Olga V. Patterson, Thomas Ginter, Scott L. DuVall:
Building a Common Pipeline for Rule-based Document Classification. MedInfo 2013: 1211 - [c14]Tyler Forbush, Shuying Shen, Scott L. DuVall:
An Integrated Approach to Chart Review and Annotation. MedInfo 2013: 1267 - 2012
- [j11]Jennifer H. Garvin, Scott L. DuVall, Brett R. South, Bruce E. Bray, Daniel Bolton, Julia Heavirland, Steve Pickard, Paul Heidenreich, Shuying Shen, Charlene R. Weir, Matthew H. Samore, Mary K. Goldstein:
Automated extraction of ejection fraction for quality measurement using regular expressions in Unstructured Information Management Architecture (UIMA) for heart failure. J. Am. Medical Informatics Assoc. 19(5): 859-866 (2012) - [j10]Scott L. DuVall, Alison M. Fraser, Kerry Rowe, Alun Thomas, Geraldine P. Mineau:
Evaluation of record linkage between a large healthcare provider and the Utah Population Database. J. Am. Medical Informatics Assoc. 19(e1) (2012) - [j9]Makoto Jones, Scott L. DuVall, Joshua Spuhl, Matthew H. Samore, Christopher D. Nielson, Michael A. Rubin:
Identification of methicillin-resistant Staphylococcus aureus within the Nation's Veterans Affairs Medical Centers using natural language processing. BMC Medical Informatics Decis. Mak. 12: 34 (2012) - [j8]Anusua Trivedi, Piyush Rai, Hal Daumé III, Scott L. DuVall:
Leveraging Social Bookmarks from Partially Tagged Corpus for Improved Web Page Clustering. ACM Trans. Intell. Syst. Technol. 3(4): 67:1-67:18 (2012) - [c13]Ryan Cornia, Olga V. Patterson, Scott L. DuVall:
JMX Analysis Module: Multi-thread aggregate NLP performance monitoring. AMIA 2012 - [c12]Tyler Forbush, Brad Adams, Shuying Shen, Brett R. South, Jonathan R. Nebeker, Scott L. DuVall:
CASPR: Friendly Annotation Management. AMIA 2012 - [c11]James Potter, Corinne Halls, Beniel Malohi, Scott L. DuVall:
Project Management and Coordination: Selecting Communication Tools for Multi-Site, Multidisciplinary Collaboration. AMIA 2012 - [c10]Ying Suo, Shuying Shen, Scott L. DuVall, Özlem Uzuner, Brett R. South:
Evaluation and Visualization of Human Annotator Learning Patterns. AMIA 2012 - [c9]Brett R. South, Shuying Shen, Jianwei Leng, Tyler Forbush, Scott L. DuVall, Wendy W. Chapman:
A Prototype Tool Set to Support Machine-Assisted Annotation. BioNLP@HLT-NAACL 2012: 130-139 - [c8]Olga V. Patterson, Gail S. Kerr, J. Steuart Richards, Carl A. Nunziato, David D. Maron, Richard L. Amdur, Scott L. DuVall:
Identifying Provider Counseling Practices Using Natural Language Processing: Gout Example. HISB 2012: 127 - 2011
- [j7]Özlem Uzuner, Brett R. South, Shuying Shen, Scott L. DuVall:
2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text. J. Am. Medical Informatics Assoc. 18(5): 552-556 (2011) - [j6]Tracy J. Robinson, Scott L. DuVall, Richard H. Wiggins III:
Creation and Storage of Standards-based Pre-scanning Patient Questionnaires in PACS as DICOM Objects. J. Digit. Imaging 24(5): 823-827 (2011) - [c7]Balaji Soundrarajan, Thomas Ginter, Scott L. DuVall:
An Interface for Rapid Natural Language Processing Development in UIMA. ACL (System Demonstrations) 2011: 139-144 - [c6]Scott L. DuVall, Keith W. Boone, Adi V. Gundlapalli, Brett R. South, Shuying Shen, Jonathan R. Nebeker, Leonard W. D'Avolio, Matthew H. Samore:
Creating Reusable Annotated Corpora with the Clinical Document Architecture. HICSS 2011: 1-10 - [c5]Avishek Saha, Piyush Rai, Hal Daumé III, Suresh Venkatasubramanian, Scott L. DuVall:
Active Supervised Domain Adaptation. ECML/PKDD (3) 2011: 97-112 - 2010
- [j5]Scott L. DuVall, Richard A. Kerber, Alun Thomas:
Extending the Fellegi-Sunter probabilistic record linkage method for approximate field comparators. J. Biomed. Informatics 43(1): 24-30 (2010) - [c4]Anusua Trivedi, Piyush Rai, Scott L. DuVall, Hal Daumé III:
Exploiting tag and word correlations for improved webpage clustering. SMUC@CIKM 2010: 3-12 - [c3]Scott L. DuVall, Jeffrey P. Ferraro:
The Role of Coreference Resolution in Outbreak Reporting and Detection. HICSS 2010: 1-8 - [c2]Scott L. DuVall, Alison M. Fraser, Richard A. Kerber, Geraldine P. Mineau, Alun Thomas:
The Impact of a Growing Minority Population on Identification of Duplicate Records in an Enterprise Data Warehouse. MedInfo 2010: 1122-1126
2000 – 2009
- 2009
- [j4]Aaron W. C. Kamauu, Scott L. DuVall, David E. Avrin:
Using Java to Generate Globally Unique Identifiers for DICOM Objects. J. Digit. Imaging 22(1): 11-14 (2009) - [j3]Tracy J. Robinson, Scott L. DuVall, Richard H. Wiggins III:
Creation and Usability Testing of a Web-Based Pre-Scanning Radiology Patient Safety and History Questionnaire Set. J. Digit. Imaging 22(6): 641-647 (2009) - 2008
- [j2]Aaron W. C. Kamauu, Scott L. DuVall, Richard H. Wiggins III, David E. Avrin:
Using Applet-Servlet Communication for Optimizing Window, Level and Crop for DICOM to JPEG Conversion. J. Digit. Imaging 21(3): 348-354 (2008) - [j1]Aaron W. C. Kamauu, Scott L. DuVall, Andrew P. Liimatta, Richard H. Wiggins III, David E. Avrin:
Translating the IHE Teaching File and Clinical Trial Export (TCE) Profile Document Templates into Functional DICOM Structured Report Objects. J. Digit. Imaging 21(4): 390-407 (2008) - 2006
- [c1]Jacob S. Tripp, Scott L. DuVall, Derek L. Cowan, Aaron W. C. Kamauu:
Academic Podcasting: Quality Media Delivery. AMIA 2006
Coauthor Index
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