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Juliane Fluck

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2020 – today

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2024
[j22]
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Sumit Madan, Lisa Kühnel, Holger Fröhlich, Martin Hofmann-Apitius, Juliane Fluck:
Dataset of miRNA-disease relations extracted from textual data using transformer-based neural networks. Database J. Biol. Databases Curation 2024 (2024)
[j21]
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Iris Pigeot, Wolfgang Ahrens, Johannes Darms, Juliane Fluck, Martin Golebiewski, Horst K. Hahn, Xiaoming Hu, Timm Intemann, Elisa Kasbohm, Toralf Kirsten, Sebastian Klammt, Sophie Anne Ines Klopfenstein, Bianca Lassen-Schmidt, Manuela Peters, Ulrich Sax, Dagmar Waltemath, Carsten Oliver Schmidt:
Making Epidemiological and Clinical Studies FAIR Using the Example of COVID-19. Datenbank-Spektrum 24(2): 117-128 (2024)
[c28]
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Sobhan Moazemi, Tim Adams, Hwei Geok Ng, Lisa Kühnel, Julian Schneider, Anatol-Fiete Näher, Juliane Fluck, Holger Fröhlich:
NFDI4Health Workflow and Service for Synthetic Data Generation, Assessment and Risk Management. GMDS 2024: 21-29
[c27]
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Johannes Darms, Vera Clemens, Marisabel Gonzalez-Ocanto, Claudia Brünings-Kuppe, Selim Cici, Juliane Fluck:
The German Central Health Study Hub - A Service to Find and Publish Clinical, Public Health and Epidemiolocal Studies and Associated Documents. GMDS 2024: 129-137
[c26]
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Julian Schneider, Marvin Walter, Karen Otte, Thierry Meurers, Ines Perrar, Ute Nöthlings, Tim Adams, Holger Fröhlich, Fabian Prasser, Juliane Fluck, Lisa Kühnel:
Privacy Risk Assessment for Synthetic Longitudinal Health Data. GMDS 2024: 270-279
[i4]
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  - journals/corr/abs-2408-04478
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Sobhan Moazemi, Tim Adams, Hwei Geok Ng, Lisa Kühnel, Julian Schneider, Anatol-Fiete Näher, Juliane Fluck, Holger Fröhlich:
NFDI4Health workflow and service for synthetic data generation, assessment and risk management. CoRR abs/2408.04478 (2024)
2023
[j20]
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Xenia Specka, Daniel Martini, Claus Weiland, Daniel Arend, Senthold Asseng, Franziska Boehm, Til Feike, Juliane Fluck, David Gackstetter, Aida Gonzales-Mellado, Thomas Hartmann, Jan-Henrik Haunert, Florian Hoedt, Carsten Hoffmann, Patrick König, Matthias Lange, Stephan Lesch, Birte Lindstädt, Gunnar Lischeid, Markus Möller, Uwe Rascher, Jochen Christoph Reif, Markus Schmalzl, Matthias Senft, Ulrike Stahl, Nikolai Svoboda, Björn Usadel, Heidi Webber, Frank Ewert:
FAIRagro: Ein Konsortium in der Nationalen Forschungsdateninfrastruktur (NFDI) für Forschungsdaten in der Agrosystemforschung. Inform. Spektrum 46(1): 24-35 (2023)
[c25]
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Leyla Jael Castro, Juliane Fluck, Daniel Arend, Matthias Lange, Daniel Martini, Steffen Neumann, Sonja Schimmler, Dietrich Rebholz-Schuhmann:
Schema.org as a Lightweight Harmonization Approach for NFDI. CoRDI 2023
[c24]
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Juliane Fluck, Martin Golebiewski, Johannes Darms:
Data Publication for Personalised Health Data A New Publication Standard Introduced by NFDI4Health. CoRDI 2023
[c23]
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Iris Pigeot, Juliane Fluck, Johannes Darms, Carsten Oliver Schmidt:
The NFDI4Health - Task Force COVID-19. CoRDI 2023
[c22]
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Sonja Schimmler, Reinhard Altenhöner, Lars Bernard, Juliane Fluck, Axel Klinger, Sören Lorenz, Brigitte Mathiak, Bernhard Miller, Raphael Ritz, Thomas Schörner-Sadenius, Alexander Sczyrba, Regine Stein:
Base4NFDI - Basic Services for NFDI Creating NFDI-Wide Basic Services in a World of Specific Domains. CoRDI 2023
[c21]
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Julia Sasse, Juliane Fluck:
An Annotation Workbench for Semantic Annotation of Data Collection Instruments. MIE 2023: 108-112
[c20]
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Matthias Löbe, Aliaksandra Shutsko, Carsten Oliver Schmidt, Johannes Darms, Sophie Anne Ines Klopfenstein, Carina Nina Vorisek, Xiaoming Hu, Martin Golebiewski, Juliane Fluck:
A Semantic Representation of the NFDI4Health Metadata Schema Utilizing the CEDAR Workbench. SWAT4HCLS 2023: 143-144
[i3]
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  - journals/corr/abs-2305-07685
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Lisa Kühnel, Julian Schneider, Ines Perrar, Tim Adams, Fabian Prasser, Ute Nöthlings, Holger Fröhlich, Juliane Fluck:
Synthetic data generation for a longitudinal cohort study - Evaluation, method extension and reproduction of published data analysis results. CoRR abs/2305.07685 (2023)
2022
[j19]
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  - journals/biodb/LangnickelDHDF22
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Lisa Langnickel, Johannes Darms, Katharina Heldt, Denise Ducks, Juliane Fluck:
Continuous development of the semantic search engine preVIEW: from COVID-19 to long COVID. Database J. Biol. Databases Curation 2022(2022) (2022)
[j18]
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Philipp Wegner, Sebastian Schaaf, Mischa Uebachs, Daniel Domingo-Fernández, Yasamin Salimi, Stephan Gebel, Astghik Sargsyan, Colin Birkenbihl, Stephan Springstubbe, Thomas Klockgether, Juliane Fluck, Martin Hofmann-Apitius, Alpha Tom Kodamullil:
Integrative data semantics through a model-enabled data stewardship. Bioinform. 38(15): 3850-3852 (2022)
[j17]
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  - journals/biomedsem/KuhnelF22
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Lisa Kühnel, Juliane Fluck:
We are not ready yet: limitations of state-of-the-art disease named entity recognizers. J. Biomed. Semant. 13(1): 26 (2022)
[j16]
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  - journals/ijmi/MadanZBSFFNMHS22
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Sumit Madan, Fabian Julius Zimmer, Helena Balabin, Sebastian Schaaf, Holger Fröhlich, Juliane Fluck, Irene Neuner, Klaus Mathiak, Martin Hofmann-Apitius, Pegah Sarkheil:
Deep Learning-based detection of psychiatric attributes from German mental health records. Int. J. Medical Informatics 161: 104724 (2022)
[i2]
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  - journals/corr/abs-2202-10101
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Lisa Langnickel, Alexander Schulz, Barbara Hammer, Juliane Fluck:
BERT WEAVER: Using WEight AVERaging to Enable Lifelong Learning for Transformer-based Models. CoRR abs/2202.10101 (2022)
2021
[c19]
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Johannes Darms, Jörg Henke, Xiaoming Hu, Carsten Oliver Schmidt, Martin Golebiewski, Juliane Fluck:
Improving the FAIRness of Health Studies in Germany: The German Central Health Study Hub COVID-19. EFMI-STC 2021: 78-82
[c18]
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  - conf/mie/LangnickelBDMF21
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Lisa Langnickel, Roman Baum, Johannes Darms, Sumit Madan, Juliane Fluck:
COVID-19 preVIEW: Semantic Search to Explore COVID-19 Research Preprints. MIE 2021: 78-82
[c17]
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  - conf/mie/SchmidtDSLNSLGK21
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Carsten Oliver Schmidt, Johannes Darms, Aliaksandra Shutsko, Matthias Löbe, Rajini Nagrani, Bastian Seifert, Birte Lindstädt, Martin Golebiewski, Sofiya Koleva, Theresa Bender, Christian Robert Bauer, Ulrich Sax, Xiaoming Hu, Michael Lieser, Vivien Junker, Sophie Klopfenstein, Atinkut Zeleke, Dagmar Waltemath, Iris Pigeot, Juliane Fluck:
Facilitating Study and Item Level Browsing for Clinical and Epidemiological COVID-19 Studies. MIE 2021: 794-798
2020
[j15]
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  - journals/nar/RahmanLBFR0MMSG20
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Raza-Ur Rahman, Anna-Maria Liebhoff, Vikas Bansal, Maksims Fiosins, Ashish Rajput, Abdul Sattar, Daniel Sumner Magruder, Sumit Madan, Ting Sun, Abhivyakti Gautam, Sven Heins, Timur Liwinski, Jörn Bethune, Claudia Trenkwalder, Juliane Fluck, Brit Mollenhauer, Stefan Bonn:
SEAweb: the small RNA Expression Atlas web application. Nucleic Acids Res. 48(Database-Issue): D204-D219 (2020)

2010 – 2019

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2019
[j14]
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  - journals/biodb/MadanSETAQRHF19
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Sumit Madan, Justyna Szostak, Ravikumar Komandur Elayavilli, Richard Tzong-Han Tsai, Mehdi Ali, Longhua Qian, Majid Rastegar-Mojarad, Julia Hoeng, Juliane Fluck:
The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track. Database J. Biol. Databases Curation 2019: baz084 (2019)
[c16]
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Graciela Gonzalez, Zhiyong Lu, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen, Jingcheng Du, Juliane Fluck, Casey S. Greene, John H. Holmes, Aditya Kashyap, Rikke Linnemann Nielsen, Zhengqing Ouyang, Sebastian Schaaf, Jaclyn N. Taroni, Cui Tao, Yuping Zhang, Hongfang Liu:
Text Mining and Machine Learning for Precision Medicine. PSB 2019: 449-454
2018
[c15]
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Sumit Madan, Maksims Fiosins, Stefan Bonn, Juliane Fluck:
A semantic data integration methodology for translational neurodegenerative disease research. SWAT4LS 2018
2017
[c14]
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  - conf/fedcsis/DorpinghausSFJ17
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Jens Dörpinghaus, Sebastian Schaaf, Juliane Fluck, Marc Jacobs:
Document Clustering using a Graph Covering with Pseudostable Sets. FedCSIS 2017: 329-338
[p1]
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  - books/sp/17/FluckSZCS17
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Juliane Fluck, Philipp Senger, Wolfgang Ziegler, Steffen Claus, Horst Schwichtenberg:
The cloud4health Project: Secondary Use of Clinical Data with Secure Cloud-Based Text Mining Services. Scientific Computing and Algorithms in Industrial Simulations 2017: 285-315
2016
[j13]
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  - journals/biodb/FluckMAKKRCHSHP16
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Juliane Fluck, Sumit Madan, Sam Ansari, Alpha Tom Kodamullil, Reagon Karki, Majid Rastegar-Mojarad, Natalie L. Catlett, William Hayes, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch:
Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL). Database J. Biol. Databases Curation 2016 (2016)
[j12]
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Sumit Madan, Sven Hodapp, Philipp Senger, Sam Ansari, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch, Juliane Fluck:
The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track. Database J. Biol. Databases Curation 2016 (2016)
[j11]
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Fabio Rinaldi, Tilia Renate Ellendorff, Sumit Madan, Simon Clematide, Adrian Van der Lek, Heinz-Theodor Mevissen, Juliane Fluck:
BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language. Database J. Biol. Databases Curation 2016 (2016)
[j10]
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Qinghua Wang, Shabbir Syed-Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi:
Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation 2016 (2016)
2015
[j9]
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  - journals/biodb/SzostakAMFTILHP15
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Justyna Szostak, Sam Ansari, Sumit Madan, Juliane Fluck, Marja Talikka, Anita Iskandar, Hector De Leon, Martin Hofmann-Apitius, Manuel C. Peitsch, Julia Hoeng:
Construction of biological networks from unstructured information based on a semi-automated curation workflow. Database J. Biol. Databases Curation 2015 (2015)
2014
[i1]
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  - journals/f1000research/KawaliaBHFK14
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Shweta Bagewadi Kawalia, Tamara Bobic, Martin Hofmann-Apitius, Juliane Fluck, Roman Klinger:
Detecting miRNA Mentions and Relations in Biomedical Literature. F1000Research 3: 205 (2014)
2013
[c13]
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Juliane Fluck, Alexander Klenner, Sumit Madan, Sam Ansari, Tamara Bobic, Julia Hoeng, Martin Hofmann-Apitius, Manuel C. Peitsch:
BEL Networks Derived from Qualitative Translations of BioNLP Shared Task Annotations. BioNLP@ACL 2013: 80-88
[c12]
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  - conf/semeval/BobicFH13
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Tamara Bobic, Juliane Fluck, Martin Hofmann-Apitius:
SCAI: Extracting drug-drug interactions using a rich feature vector. SemEval@NAACL-HLT 2013: 675-683
2012
[j8]
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Harsha Gurulingappa, Abdul Mateen Rajput, Angus Roberts, Juliane Fluck, Martin Hofmann-Apitius, Luca Toldo:
Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports. J. Biomed. Informatics 45(5): 885-892 (2012)
[j7]
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Erfan Younesi, Luca Toldo, Bernd Müller, Christoph M. Friedrich, Natalia Novac, Alexander Scheer, Martin Hofmann-Apitius, Juliane Fluck:
Mining biomarker information in biomedical literature. BMC Medical Informatics Decis. Mak. 12: 148 (2012)
2011
[c11]
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Harsha Gurulingappa, Bernd Müller, Martin Hofmann-Apitius, Juliane Fluck:
Information Retrieval Framework for Technology Survey in Biomedical and Chemistry Literature. TREC 2011
[c10]
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Harsha Gurulingappa, Bernd Müller, Martin Hofmann-Apitius, Juliane Fluck:
A Semantic Platform for Information Retrieval from E-Health Records. TREC 2011
[c9]
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Mihai Lupu, Jiashu Zhao, Jimmy X. Huang, Harsha Gurulingappa, Juliane Fluck, Marc Zimmermann, Igor V. Filippov, John Tait:
Overview of the TREC 2011 Chemical IR Track. TREC 2011
2010
[c8]
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  - conf/irfc/MullerKGMHFF10
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Bernd Müller, Roman Klinger, Harsha Gurulingappa, Heinz-Theodor Mevissen, Martin Hofmann-Apitius, Juliane Fluck, Christoph M. Friedrich:
Abstracts versus Full Texts and Patents: A Quantitative Analysis of Biomedical Entities. IRFC 2010: 152-165
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Harsha Gurulingappa, Bernd Müller, Roman Klinger, Heinz-Theodor Mevissen, Martin Hofmann-Apitius, Christoph M. Friedrich, Juliane Fluck:
Prior Art Search in Chemistry Patents Based On Semantic Concepts and Co-Citation Analysis. TREC 2010

2000 – 2009

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2009
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Harsha Gurulingappa, Corinna Kolárik, Martin Hofmann-Apitius, Juliane Fluck:
Concept-Based Semi-Automatic Classification of Drugs. J. Chem. Inf. Model. 49(8): 1986-1992 (2009)
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Harsha Gurulingappa, Bernd Müller, Roman Klinger, Heinz-Theodor Mevissen, Martin Hofmann-Apitius, Juliane Fluck, Christoph M. Friedrich:
Patent Retrieval in Chemistry Based on Semantically Tagged Named Entities. TREC 2009
2008
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  - conf/ismb/KlingerKFHF08
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Roman Klinger, Corinna Kolárik, Juliane Fluck, Martin Hofmann-Apitius, Christoph M. Friedrich:
Detection of IUPAC and IUPAC-like chemical names. ISMB 2008: 268-276
2007
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Roman Klinger, Christoph M. Friedrich, Heinz-Theodor Mevissen, Juliane Fluck, Martin Hofmann-Apitius, Laura Inés Furlong, Ferran Sanz:
Identifying gene-Specific Variations in Biomedical Text. J. Bioinform. Comput. Biol. 5(6): 1277-1296 (2007)
[c4]
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Corinna Kolárik, Martin Hofmann-Apitius, Marc Zimmermann, Juliane Fluck:
Identification of new drug classification terms in textual resources. ISMB/ECCB (Supplement of Bioinformatics) 2007: 264-272
2006
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Sophia Ananiadou, Juliane Fluck:
Proceedings of the Second International Symposium for Semantic Mining in Biomedicine. BMC Bioinform. 7(S-3) (2006)
[j3]
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Thomas Karopka, Juliane Fluck, Heinz-Theodor Mevissen, Änne Glass:
The Autoimmune Disease Database: a dynamically compiled literature-derived database. BMC Bioinform. 7: 325 (2006)
[c3]
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Christoph M. Friedrich, Thomas Revillion, Martin Hofmann, Juliane Fluck:
Biomedical and Chemical Named Entity Recognition with Conditional Random Fields: The Advantage of Dictionary Features. SMBM 2006
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Sophia Ananiadou, Juliane Fluck:
Proceedings of the Second International Symposium on Semantic Mining in Biomedicine, Jena, Germany, April 9-12, 2006. CEUR Workshop Proceedings 177, CEUR-WS.org 2006 [contents]
2005
[j2]
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Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevissen, Ralf Zimmer, Juliane Fluck:
ProMiner: rule-based protein and gene entity recognition. BMC Bioinform. 6(S-1) (2005)
2003
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Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer:
Microarrays: How Many Do You Need? J. Comput. Biol. 10(3/4): 653-667 (2003)
[c2]
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Daniel Hanisch, Juliane Fluck, Heinz-Theodor Mevissen, Ralf Zimmer:
Playing Biology's Name Game: Identifying Protein Names in Scientific Text. Pacific Symposium on Biocomputing 2003: 403-414
2002
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  - conf/recomb/ZienFZL02
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Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer:
Microarrays: how many do you need? RECOMB 2002: 321-330

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