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Nicholson T. Collier
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2020 – today
- 2024
- [c24]Arindam Fadikar, Abby Stevens, Nicholson T. Collier, Kok Ben Toh, Olga Morozova, Anna Hotton, Jared Clark, David Higdon, Jonathan Ozik:
Towards Improved Uncertainty Quantification of Stochastic Epidemic Models Using Sequential Monte Carlo. IPDPS (Workshops) 2024: 843-852 - [i3]Connor Robertson, Cosmin Safta, Nicholson T. Collier, Jonathan Ozik, Jaideep Ray:
Bayesian calibration of stochastic agent based model via random forest. CoRR abs/2406.19524 (2024) - 2023
- [j12]Atesmachew Hailegiorgis, Yuji Ishida, Nicholson T. Collier
, Michio Imamura, Zhenzhen Shi, Vladimir Reinharz, Masataka Tsuge, Danny Barash, Nobuhiko Hiraga, Hiroshi Yokomichi, Chise Tateno, Jonathan Ozik
Modeling suggests that virion production cycles within individual cells is key to understanding acute hepatitis B virus infection kinetics. PLoS Comput. Biol. 19(8) (2023) - [c23]Mihael Hategan-Marandiuc
PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs. e-Science 2023: 1-10 - [c22]Nicholson T. Collier, Justin M. Wozniak, Abby Stevens, Yadu N. Babuji, Mickaël Binois, Arindam Fadikar, Alexandra Würth, Kyle Chard, Jonathan Ozik:
Developing Distributed High-performance Computing Capabilities of an Open Science Platform for Robust Epidemic Analysis. IPDPS Workshops 2023: 868-877 - [c21]Arindam Fadikar, Nicholson T. Collier, Abby Stevens, Jonathan Ozik, Mickaël Binois, Kok Ben Toh:
Trajectory-Oriented Optimization of Stochastic Epidemiological Models. WSC 2023: 1244-1255 - [i2]Nicholson T. Collier, Justin M. Wozniak, Abby Stevens, Yadu N. Babuji, Mickaël Binois, Arindam Fadikar, Alexandra Würth, Kyle Chard, Jonathan Ozik:
Developing Distributed High-performance Computing Capabilities of an Open Science Platform for Robust Epidemic Analysis. CoRR abs/2304.14244 (2023) - [i1]Mihael Hategan-Marandiuc, André Merzky, Nicholson T. Collier, Ketan Maheshwari, Jonathan Ozik, Matteo Turilli, Andreas Wilke, Justin M. Wozniak, Kyle Chard, Ian T. Foster, Rafael Ferreira da Silva, Shantenu Jha, Daniel E. Laney:
PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs. CoRR abs/2307.07895 (2023) - 2022
- [j11]Maria DeYoreo
Sequentially calibrating a Bayesian microsimulation model to incorporate new information and assumptions. BMC Medical Informatics Decis. Mak. 22(1): 12 (2022) - [c20]Nicholson T. Collier, Jonathan Ozik:
Distributed Agent-Based Simulation with Repast4Py. WSC 2022: 192-206 - 2021
- [j10]Jonathan Ozik
A population data-driven workflow for COVID-19 modeling and learning. Int. J. High Perform. Comput. Appl. 35(5) (2021) - [j9]Stacy Tessler Lindau
Building and experimenting with an agent-based model to study the population-level impact of CommunityRx, a clinic-based community resource referral intervention. PLoS Comput. Biol. 17(10) (2021) - [c19]Bogdan Mucenic, Chaitanya Kaligotla, Abby Stevens, Jonathan Ozik, Nicholson T. Collier, Charles M. Macal:
Load Balancing Schemes for Large Synthetic Population-Based Complex Simulators. IPDPS Workshops 2021: 985-988 - [c18]Eric Tatara, John A. Schneider, Madeline Quasebarth, Nicholson T. Collier, Harold Pollack, Basmattee Boodram, Samuel H. Friedman, Elizabeth Salisbury-Afshar
Application of Distributed Agent-based Modeling to Investigate Opioid Use Outcomes in Justice Involved Populations. IPDPS Workshops 2021: 989-997 - 2020
- [j8]Chaitanya Kaligotla
Model Exploration of an Information-Based Healthcare Intervention Using Parallelization and Active Learning. J. Artif. Soc. Soc. Simul. 23(4) (2020) - [c17]Nicholson T. Collier, Jonathan Ozik, Eric R. Tatara:
Experiences in Developing a Distributed Agent-based Modeling Toolkit with Python. PyHPC@SC 2020: 1-12 - [c16]Justin M. Wozniak, Hyun Seung Yoo, Jamaludin Mohd-Yusof, Bogdan Nicolae
High-bypass Learning: Automated Detection of Tumor Cells That Significantly Impact Drug Response. MLHPC/AI4S@SC 2020: 40-49
2010 – 2019
- 2019
- [c15]Eric Tatara, Nicholson T. Collier, Jonathan Ozik, Alexander Gutfraind, Scott J. Cotler, Harel Dahari, Marian Major, Basmattee Boodram:
Multi-Objective Model Exploration of Hepatitis C Elimination in an Agent-Based Model of People who Inject Drugs. WSC 2019: 1008-1019 - 2018
- [j7]Justin M. Wozniak, Rajeev Jain
CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research. BMC Bioinform. 19-S(18): 59-69 (2018) - [j6]Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Charles M. Macal, Chase Cockrell, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, Randy W. Heiland
High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow. BMC Bioinform. 19-S(18): 81-97 (2018) - [j5]Jonathan Ozik
Extreme-Scale Dynamic Exploration of a Distributed Agent-Based Model With the EMEWS Framework. IEEE Trans. Comput. Soc. Syst. 5(3): 884-895 (2018) - [c14]George F. Zaki, Justin M. Wozniak, Jonathan Ozik, Nicholson T. Collier, Thomas S. Brettin, Rick Stevens:
Portable and Reusable Deep Learning Infrastructure with Containers to Accelerate Cancer Studies. ESPM2@SC 2018: 54-61 - [c13]Charles M. Macal, Nicholson T. Collier, Jonathan Ozik, Eric R. Tatara, John T. Murphy:
Chisim: an Agent-based simulation Model of Social Interactions in a Large Urban Area. WSC 2018: 810-820 - [c12]Chaitanya Kaligotla
Modeling an Information-based Community Health Intervention on the South Side of Chicago. WSC 2018: 2600-2611 - 2017
- [c11]Eric Tatara, Nicholson T. Collier, Jonathan Ozik, Charles M. Macal:
Endogenous Social Networks from Large-Scale Agent-Based Models. IPDPS Workshops 2017: 1492-1499 - 2016
- [c10]Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Carmine Spagnuolo
From desktop to Large-Scale Model Exploration with Swift/T. WSC 2016: 206-220 - 2015
- [j4]Jonathan Ozik, Nicholson T. Collier, Todd Combs, Charles M. Macal, Michael J. North:
Repast Simphony Statecharts. J. Artif. Soc. Soc. Simul. 18(3) (2015) - [c9]Nicholson T. Collier, Jonathan Ozik, Charles M. Macal:
Large-Scale Agent-Based Modeling with Repast HPC: A Case Study in Parallelizing an Agent-Based Model. Euro-Par Workshops 2015: 454-465 - [c8]John T. Murphy, Jonathan Ozik, Nicholson T. Collier, Mark Altaweel, Richard B. Lammers
Simulating regional hydrology and water management: an integrated agent-based approach. WSC 2015: 3913-3924 - 2014
- [c7]Jonathan Ozik, Michael Wilde, Nicholson T. Collier, Charles M. Macal:
Adaptive Simulation with Repast Simphony and Swift. Euro-Par Workshops (1) 2014: 418-429 - [c6]Jonathan Ozik, Nicholson T. Collier, John T. Murphy, Mark Altaweel, Richard B. Lammers
Simulating water, individuals, and management using a coupled and distributed approach. WSC 2014: 1120-1131 - 2013
- [j3]Michael J. North, Nicholson T. Collier, Jonathan Ozik, Eric R. Tatara, Charles M. Macal, Mark J. Bragen, Pam Sydelko:
Complex adaptive systems modeling with Repast Simphony. Complex Adapt. Syst. Model. 1: 3 (2013) - [j2]Nicholson T. Collier, Michael J. North:
Parallel agent-based simulation with Repast for High Performance Computing. Simul. 89(10): 1215-1235 (2013) - [c5]Nicholson T. Collier, Jonathan Ozik:
Test-driven agent-based simulation development. WSC 2013: 1551-1559 - [c4]Jonathan Ozik, Nicholson T. Collier, John T. Murphy, Michael J. North:
The ReLogo agent-based modeling language. WSC 2013: 1560-1568 - 2012
- [c3]Charles M. Macal, Michael J. North, Nicholson T. Collier, Vanja M. Dukic
Modeling the spread of community-associated MRSA. WSC 2012: 73:1-73:12
2000 – 2009
- 2006
- [j1]Michael J. North, Nicholson T. Collier, Jerry R. Vos:
Experiences creating three implementations of the repast agent modeling toolkit. ACM Trans. Model. Comput. Simul. 16(1): 1-25 (2006) - [c2]Michael J. North, T. R. Howe, Nicholson T. Collier, Jerry R. Vos:
Demeter, Persephone, and the Search for Emergence in Agent-Based Models. AAAI Fall Symposium: Interaction and Emergent Phenomena in Societies of Agents 2006: 36-43 - [c1]Michael J. North, T. R. Howe, Nicholson T. Collier, Jerry R. Vos:
A Declarative Model Assembly Infrastructure for Verification and Validation. WCSS 2006: 129-140
Coauthor Index
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