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Ruibang Luo
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2020 – today
- 2024
- [j17]Shumin Li
, Jiajun Ma, Tianyi Zhao, Yuran Jia, Bo Liu, Ruibang Luo, Yuanhua Huang
CellContrast: Reconstructing spatial relationships in single-cell RNA sequencing data via deep contrastive learning. Patterns 5(8): 101022 (2024) - 2023
- [j16]Huijing Yu, Zhenxian Zheng, Junhao Su, Tak Wah Lam
Boosting variant-calling performance with multi-platform sequencing data using Clair3-MP. BMC Bioinform. 24(1): 308 (2023) - [c11]Lei Chen
Exploring Pair-Aware Triangular Attention for Biomedical Relation Extraction. BCB 2023: 35:1-35:5 - [c10]Lei Chen
Large-scale Dataset and Effective Model for Variant-Disease Associations Extraction. BCB 2023: 37:1-37:6 - 2022
- [j15]Junhao Su
Clair3-trio: high-performance Nanopore long-read variant calling in family trios with trio-to-trio deep neural networks. Briefings Bioinform. 23(5) (2022) - [j14]Yekai Zhou
Duet: SNP-assisted structural variant calling and phasing using Oxford nanopore sequencing. BMC Bioinform. 23(1): 465 (2022) - [j13]Hong-Yu Zhou
Generalized radiograph representation learning via cross-supervision between images and free-text radiology reports. Nat. Mach. Intell. 4(1): 32-40 (2022) - [j12]Zhenxian Zheng
Symphonizing pileup and full-alignment for deep learning-based long-read variant calling. Nat. Comput. Sci. 2(12): 797-803 (2022) - 2021
- [c9]Ye Wu, Hing-Fung Ting, Tak Wah Lam
BioNumQA-BERT: answering biomedical questions using numerical facts with a deep language representation model. BCB 2021: 57:1-57:6 - [i3]Hong-Yu Zhou, Xiaoyu Chen, Yinghao Zhang, Ruibang Luo, Liansheng Wang, Yizhou Yu:
Generalized Radiograph Representation Learning via Cross-supervision between Images and Free-text Radiology Reports. CoRR abs/2111.03452 (2021) - 2020
- [j11]Ruibang Luo
Skyhawk: an artificial neural network-based discriminator for reviewing clinically significant genomic variants. Int. J. Comput. Biol. Drug Des. 13(5/6): 431-437 (2020) - [j10]Ruibang Luo
Exploring the limit of using a deep neural network on pileup data for germline variant calling. Nat. Mach. Intell. 2(4): 220-227 (2020) - [c8]Ye Wu, Ruibang Luo
Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long reads. BCB 2020: 15:1-15:7 - [c7]Wui Wang Lui, Amy Wing-Sze Leung, Henry C. M. Leung, Yan Xin, Jade L. L. Teng, Patrick C. Y. Woo, Tak Wah Lam, Ruibang Luo
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics. BIBM 2020: 329-336 - [c6]Xu Cao
ChromSeg: Two-Stage Framework for Overlapping Chromosome Segmentation and Reconstruction. BIBM 2020: 2335-2342 - [c5]Boxuan Li, Reynold Cheng
MC-Explorer: Analyzing and Visualizing Motif-Cliques on Large Networks. ICDE 2020: 1722-1725
2010 – 2019
- 2019
- [c4]Ye Wu, Ruibang Luo
RENET: A Deep Learning Approach for Extracting Gene-Disease Associations from Literature. RECOMB 2019: 272-284 - 2018
- [j9]Huijun Mai, Yifan Zhang, Dinghua Li, Henry Chi-Ming Leung, Ruibang Luo
AC-DIAMOND v1: accelerating large-scale DNA-protein alignment. Bioinform. 34(21): 3744-3746 (2018) - [c3]Dinghua Li, Henry Chi-Ming Leung, Chi-Kwong Wong, Yifan Zhang, Wai-Chun Law, Yan Xin, Ruibang Luo
MegaPath: Low-Similarity Pathogen Detection from Metagenomic NGS Data (Extended Abstract). ICCABS 2018: 1 - 2017
- [j8]Dinghua Li, Yukun Huang, Henry C. M. Leung, Ruibang Luo
MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs. BMC Bioinform. 18(S-12): 67-75 (2017) - 2016
- [c2]Huijun Mai, Dinghua Li, Yifan Zhang, Henry Chi-Ming Leung, Ruibang Luo
AC-DIAMOND: Accelerating Protein Alignment via Better SIMD Parallelization and Space-Efficient Indexing. IWBBIO 2016: 426-433 - 2015
- [j7]Dinghua Li, Chi-Man Liu, Ruibang Luo
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Bioinform. 31(10): 1674-1676 (2015) - [j6]Min Ou
database.bio: a web application for interpreting human variations. Bioinform. 31(24): 4035-4037 (2015) - [j5]Ruibang Luo
MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC). BMC Bioinform. 16(S-7): S10 (2015) - 2014
- [j4]Yinlong Xie, Gengxiong Wu, Jingbo Tang, Ruibang Luo
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads. Bioinform. 30(12): 1660-1666 (2014) - [j3]Weixin Wang
FaSD-somatic: a fast and accurate somatic SNV detection algorithm for cancer genome sequencing data. Bioinform. 30(17): 2498-2500 (2014) - [i2]Chi-Man Liu, Ruibang Luo
GPU-Accelerated BWT Construction for Large Collection of Short Reads. CoRR abs/1401.7457 (2014) - [i1]Sze-Hang Chan, Jeanno Cheung, Edward Wu, Heng Wang, Chi-Man Liu, Xiaoqian Zhu, Shaoliang Peng, Ruibang Luo, Tak Wah Lam:
MICA: A fast short-read aligner that takes full advantage of Intel Many Integrated Core Architecture (MIC). CoRR abs/1402.4876 (2014) - 2012
- [j2]Chi-Man Liu, Thomas K. F. Wong, Edward Wu, Ruibang Luo
SOAP3: ultra-fast GPU-based parallel alignment tool for short reads. Bioinform. 28(6): 878-879 (2012) - [j1]Binghang Liu
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly. Bioinform. 28(22): 2870-2874 (2012) - [c1]Ruibang Luo
Efficient SNP-sensitive alignment and database-assisted SNP calling for low coverage samples. BCB 2012: 163-169
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