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Fons J. Verbeek
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- affiliation: Leiden Institute of Advanced Computer Science, Netherlands
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2020 – today
- 2024
- [j39]Jia Li, Jiangwei Li, Chenxu Wang
, Fons J. Verbeek
MS2OD: outlier detection using minimum spanning tree and medoid selection. Mach. Learn. Sci. Technol. 5(1): 15025 (2024) - [c65]Nick van Nielen, Fons J. Verbeek, Lu Cao:
Visualizing, Analyzing and Constructing L-System from Arborized 3D Model Using a Web Application. BIOSTEC (1) 2024: 257-264 - [i8]Fatemeh Fazel Hesar, Bernard H. Foing, Ana M. Heras, Mojtaba Raouf, Victoria Foing, Shima Javanmardi, Fons J. Verbeek:
Advancing Machine Learning for Stellar Activity and Exoplanet Period Rotation. CoRR abs/2409.05482 (2024) - 2023
- [j38]Xue Wang, Youtian Du
Improving weakly supervised phrase grounding via visual representation contextualization with contrastive learning. Appl. Intell. 53(11): 14690-14702 (2023) - [j37]Chen Li, Marcel Polling, Lu Cao
Analysis of automatic image classification methods for Urticaceae pollen classification. Neurocomputing 522: 181-193 (2023) - [j36]Xue Wang, Youtian Du
Fine-grained label learning in object detection with weak supervision of captions. Multim. Tools Appl. 82(5): 6557-6579 (2023) - [j35]Erick Paulus
Text line extraction strategy for palm leaf manuscripts. Pattern Recognit. Lett. 174: 10-16 (2023) - [j34]Xiaoqin Tang
Image Synthesis and Modified BlendMask Instance Segmentation for Automated Nanoparticle Phenotyping. IEEE Trans. Medical Imaging 42(12): 3665-3677 (2023) - [c64]Danica Mast
Participation Patterns of Interactive Playful Museum Exhibits: Evaluating the Participant Journey Map through Situated Observations. Conference on Designing Interactive Systems 2023: 1861-1885 - [c63]Shima Javanmardi, Mehrdad Jahanbanifard, Marcello M. Bonsangue, Fons J. Verbeek:
Using a Novel Capsule Network For an Innovative Approach to Image Captioning. SDU@AAAI 2023 - [c62]Jia Li, Junling He, Jingmin Long, Chenxu Wang, Jesper Kers, Fons J. Verbeek:
Foreground Extraction in Histo-Pathological Image by Combining Mathematical Morphology Operations and U-Net. BIOIMAGING 2023: 146-153 - [c61]Yi Chen, Fons J. Verbeek, Katherine Wolstencroft:
FAIR Functional Enrichment: Assessing and Modelling Provenance in Omics Results. SWAT4HCLS 2023: 72-81 - [i7]Solomiia Kurchaba, Jasper van Vliet, Fons J. Verbeek, Cor J. Veenman:
Detection of anomalously emitting ships through deviations from predicted TROPOMI NO2 retrievals. CoRR abs/2302.12744 (2023) - [i6]Zhan Xiong, Junling He, Pieter Valkema, Tri Q. Nguyen, Maarten Naesens, Jesper Kers, Fons J. Verbeek:
Advances in Kidney Biopsy Structural Assessment through Dense Instance Segmentation. CoRR abs/2309.17166 (2023) - 2022
- [j33]Govert G. Brinkmann
Real-time interactive visualization of large networks on a tiled display system. Displays 73: 102164 (2022) - [j32]Solomiia Kurchaba
Supervised Segmentation of NO2 Plumes from Individual Ships Using TROPOMI Satellite Data. Remote. Sens. 14(22): 5809 (2022) - [j31]Shima Javanmardi
Caps Captioning: A Modern Image Captioning Approach Based on Improved Capsule Network. Sensors 22(21): 8376 (2022) - [c60]Chen Li, Wilson W. C. Yiu, Wanbin Hu, Lu Cao
A Feature Weighted Tracking Method for 3D Neutrophils in Time-lapse Microscopy. BIBM 2022: 2196-2202 - [i5]Solomiia Kurchaba, Jasper van Vliet, Fons J. Verbeek, Jacqueline J. Meulman, Cor J. Veenman:
Supervised segmentation of NO2 plumes from individual ships using TROPOMI satellite data. CoRR abs/2203.06993 (2022) - 2021
- [j30]Mohamed S. Elmahdy
Joint Registration and Segmentation via Multi-Task Learning for Adaptive Radiotherapy of Prostate Cancer. IEEE Access 9: 95551-95568 (2021) - [j29]Seyed-Hassan Miraei Ashtiani, Shima Javanmardi
Detection of Mulberry Ripeness Stages Using Deep Learning Models. IEEE Access 9: 100380-100394 (2021) - [j28]Alan Zammit, Leon S. Helwerda
A database of flavivirus RNA structures with a search algorithm for pseudoknots and triple base interactions. Bioinform. 37(7): 956-962 (2021) - [j27]Yi Chen
Establishing a consensus for the hallmarks of cancer based on gene ontology and pathway annotations. BMC Bioinform. 22(1): 178 (2021) - [j26]Lise Stork, Andreas Weber
Large-scale zero-shot learning in the wild: Classifying zoological illustrations. Ecol. Informatics 62: 101222 (2021) - [j25]Danica Mast
The Participant Journey Map: Understanding the Design of Interactive Augmented Play Spaces. Frontiers Comput. Sci. 3: 674132 (2021) - [c59]Solomiia Kurchaba, Jasper van Vliet, Jacqueline J. Meulman, Fons J. Verbeek, Cor J. Veenman:
Improving evaluation of NO2 emission from ships using spatial association on TROPOMI satellite data. SIGSPATIAL/GIS 2021: 454-457 - [c58]Erick Paulus
Binarization Strategy Using Multiple Convolutional Autoencoder Network for Old Sundanese Manuscript Images. ICDAR Workshops (2) 2021: 142-157 - [i4]Mohamed S. Elmahdy, Laurens Beljaards, Sahar Yousefi, Hessam Sokooti, Fons J. Verbeek, Uulke A. van der Heide, Marius Staring:
Joint Registration and Segmentation via Multi-Task Learning for Adaptive Radiotherapy of Prostate Cancer. CoRR abs/2105.01844 (2021) - 2020
- [j24]Lu Cao
Automated image analysis system for studying cardiotoxicity in human pluripotent stem cell-Derived cardiomyocytes. BMC Bioinform. 21(1): 187 (2020) - [j23]Fons J. Verbeek, Lu Cao:
L-systems from 3D-imaging of Phenotypes of Arborized Structures. Fundam. Informaticae 175(1-4): 327-345 (2020) - [j22]Irene Martorelli, Leon S. Helwerda
Fungal metabarcoding data integration framework for the MycoDiversity DataBase (MDDB). J. Integr. Bioinform. 17(1) (2020) - [j21]Xiaoqin Tang
Segmentation-Driven Optimization For Iterative Reconstruction in Optical Projection Tomography: An Exploration. IEEE Trans. Computational Imaging 6: 1537-1547 (2020) - [c57]Yuanhao Guo, Fons J. Verbeek, Ge Yang:
Probabilistic Inference for Camera Calibration in Light Microscopy Under Circular Motion. ISBI 2020: 149-153 - [c56]Laurens Beljaards, Mohamed S. Elmahdy, Fons J. Verbeek, Marius Staring:
A Cross-Stitch Architecture for Joint Registration and Segmentation in Adaptive Radiotherapy. MIDL 2020: 62-74 - [c55]Danica Mast, Sanne de Vries, Joost Broekens, Fons J. Verbeek:
The Importance of the Peak-End Rule for Repeated Visits to Augmented Play Spaces. PERSUASIVE (Adjunct) 2020 - [i3]Laurens Beljaards
A Cross-Stitch Architecture for Joint Registration and Segmentation in Adaptive Radiotherapy. CoRR abs/2004.08122 (2020)
2010 – 2019
- 2019
- [j20]Lise Stork, Andreas Weber
Semantic annotation of natural history collections. J. Web Semant. 59 (2019) - [c54]Xiaoqin Tang, Gerda Lamers, Fons J. Verbeek:
3D Image Deblur using Point Spread Function Modelling for Optical Projection Tomography. BIOIMAGING 2019: 67-75 - [c53]Lise Stork
Automated Semantic Annotation of Species Names in Handwritten Texts. ECIR (1) 2019: 667-680 - [i2]Yuanhao Guo, Fons J. Verbeek, Ge Yang:
Probabilistic Inference for Camera Calibration in Light Microscopy under Circular Motion. CoRR abs/1910.13740 (2019) - 2018
- [j19]Yuanhao Guo
An efficient and robust hybrid method for segmentation of zebrafish objects from bright-field microscope images. Mach. Vis. Appl. 29(8): 1211-1225 (2018) - [c52]Arthur van Rooijen, Henri Bouma
Fast and Accurate Person Re-identification with Xception Conv-Net and C2F. CIARP 2018: 611-619 - [c51]Lise Stork, Andreas Weber
From Handwritten Manuscripts to Linked Data. TPDL 2018: 330-334 - 2017
- [j18]Remi Alkemade, Fons J. Verbeek, Stephan G. Lukosch
On the Efficiency of a VR Hand Gesture-Based Interface for 3D Object Manipulations in Conceptual Design. Int. J. Hum. Comput. Interact. 33(11): 882-901 (2017) - [j17]Yuanhao Guo, Yunpeng Zhang, Fons J. Verbeek:
A Two-Phase 3-D Reconstruction Approach for Light Microscopy Axial-View Imaging. IEEE J. Sel. Top. Signal Process. 11(7): 1034-1046 (2017) - [c50]Leon S. Helwerda
Conceptual Process Models and Quantitative Analysis of Classification Problems in Scrum Software Development Practices. KDIR 2017: 357-366 - [c49]Yuanhao Guo, Hermes A. J. Spaink, E. H. J. Krekels, Herman P. Spaink
Multi-modal 3d reconstruction and measurements of zebrafish larvae and its organs using axial-view microscopy. ICIP 2017: 2194-2198 - 2016
- [j16]Lu Cao
Hierarchical classification strategy for Phenotype extraction from epidermal growth factor receptor endocytosis screening. BMC Bioinform. 17: 196 (2016) - [j15]Fuyu Cai, Fons J. Verbeek:
Rough Fuzzy C-means and Particle Swarm Optimization Hybridized Method for Information Clustering Problem. J. Commun. 11(12): 1106-1113 (2016) - [j14]Laura M. F. Bertens
Modeling biological gradient formation: combining partial differential equations and Petri nets. Nat. Comput. 15(4): 665-675 (2016) - [c48]Xiaoqin Tang, Merel van't Hoff, Jerry Hoogenboom, Yuanhao Guo, Fuyu Cai, Gerda Lamers, Fons J. Verbeek:
Fluorescence and bright-field 3D image fusion based on sinogram unification for optical projection tomography. BIBM 2016: 403-410 - [c47]Marcello A. Gómez Maureira, Fons J. Verbeek:
The Impact of Co-Located Play on Social Presence and Game Experience in a VR Game. DiGRA/FDG 2016 - [c46]Lambert Schomaker, Andreas Weber, Michiel Thijssen, Maarten Heerlien, Aske Plaat, Siegfried Nijssen, Fons J. Verbeek, Michael S. Lew, Eulalia Gasso Miracle, Katy Wolstencroft, Ernest Suyver, Bart Verheij, Marco A. Wiering, René Dekker, Joost N. Kok, Lissa Roberts, H. Jaap van den Herik:
Making Sense of Illustrated Handwritten Archives. DH 2016: 674-676 - [c45]Livia Teernstra, Peter van der Putten, Liesbeth Noordegraaf-Eelens, Fons J. Verbeek:
The Morality Machine: Tracking Moral Values in Tweets. IDA 2016: 26-37 - [c44]Enrique Larios Vargas
A Semantic-Based Metadata Validation for an Automated High-Throughput Screening Workflow: Case Study in CytomicsDB. IWBBIO 2016: 557-572 - [c43]Zhan Xiong, Fons J. Verbeek:
Segmentation of Zebrafish Larva Inhomogeneous 3D Images Using the Level-Set Method. Visualization and Data Analysis 2016: 1-9 - 2015
- [j13]Rafael V. Carvalho
Coupling of Petri Net Models of the Mycobacterial Infection Process and Innate Immune Response. Comput. 3(2): 150-176 (2015) - [j12]Mohamed S. Tleis, Fons J. Verbeek:
Machine Learning approach to discriminate Saccharomyces cerevisiae yeast cells using sophisticated image features. J. Integr. Bioinform. 12(3) (2015) - [c42]Mohamed Tleis, Fons J. Verbeek:
Contour expansion algorithm preprocessed by hough transform and circular shortest path for ovoid objects. IPTA 2015: 149-154 - [c41]Fuyu Cai, Fons J. Verbeek:
Dam-based rolling ball with fuzzy-rough constraints, a new background subtraction algorithm for image analysis in microscopy. IPTA 2015: 298-303 - [c40]Yuanhao Guo, Wouter J. Veneman, Herman P. Spaink
Silhouette-based 3D model for zebrafish high-throughput imaging. IPTA 2015: 403-408 - 2014
- [c39]Rafael V. Carvalho, Jetty Kleijn, Fons J. Verbeek:
A multi-scale extensive Petri net model of the bacterial-macrophage interaction. BioPPN@Petri Nets 2014: 15-29 - [c38]Mohamed Tleis, Fons J. Verbeek:
Extracting contours of oval-shaped objects by Hough transform and minimal path algorithms. ICDIP 2014: 915903 - [c37]Enrique Larios
CytomicsDB: A Metadata-Based Storage and Retrieval Approach for High-Throughput Screening Experiments. PRIB 2014: 72-84 - 2013
- [j11]Lu Cao
Analytical evaluation of algorithms for point cloud surface reconstruction using shape features. J. Electronic Imaging 22(4): 043008 (2013) - [c36]Maarten H. Lamers
Tinkering in Scientific Education. Advances in Computer Entertainment 2013: 568-571 - [c35]Maarten H. Lamers
Track E: Hybrid biological-digital systems. DEST 2013: 1 - [c34]Lu Cao
Nature Inspired Phenotype Analysis with 3D Model Representation Optimization. IBICA 2013: 165-174 - 2012
- [j10]Rafael V. Carvalho
Modeling Innate Immune Response to Early Mycobacterium Infection. Comput. Math. Methods Medicine 2012: 790482:1-790482:12 (2012) - [c33]Lu Cao
Evaluation of algorithms for point cloud surface reconstruction through the analysis of shape parameters. Three-Dimensional Image Processing (3DIP) and Applications 2012: 82900G - [c32]Alexander E. Nezhinsky, Esther Stoop, Astrid van der Sar, Fons J. Verbeek:
Numerical Analysis of Image based High Throughput Zebrafish Infection Screens - Matching Meaning with Data. BIOINFORMATICS 2012: 257-262 - [c31]Jinshuo Liu, Hui Wu, Qin Cao, Baifang Zhang, Yichun Gu, Mengfei Ren, Han Li, Fons J. Verbeek:
Caveolae image analysis for pathogen diabetes. BMEI 2012: 247-250 - [c30]Enrique Larios
Automation in Cytomics: A Modern RDBMS Based Platform for Image Analysis and Management in High-Throughput Screening Experiments. HIS 2012: 76-87 - [c29]Joost N. Kok, Anna-Lena Lamprecht, Fons J. Verbeek, Mark D. Wilkinson
Bioscientific Data Processing and Modeling. ISoLA (2) 2012: 7-11 - [c28]Hernando Sanchez-Faddeev, Michael T. M. Emmerich
Using Multiobjective Optimization and Energy Minimization to Design an Isoform-Selective Ligand of the 14-3-3 Protein. ISoLA (2) 2012: 12-24 - [c27]Kuan Yan, Fons J. Verbeek:
Segmentation for High-Throughput Image Analysis: Watershed Masked Clustering. ISoLA (2) 2012: 25-41 - [c26]Alexander E. Nezhinsky, Fons J. Verbeek:
Efficient and Robust Shape Retrieval from Deformable Templates. ISoLA (2) 2012: 42-55 - [c25]Dome Potikanond, Fons J. Verbeek:
Visualization and analysis of 3D gene expression patterns in zebrafish using web services. Visualization and Data Analysis 2012: 829412 - 2011
- [j9]H. Jaap van den Herik
Understanding the Artificial. Int. J. Soc. Robotics 3(2): 107-109 (2011) - [j8]Laura M. F. Bertens
A generic organ based ontology system, applied to vertebrate heart anatomy, development and physiology. J. Integr. Bioinform. 8(2) (2011) - [j7]Yanju Zhang, Elia Stupka
Identification of Common Carp Innate Immune Genes with Whole-Genome Sequencing and RNA-Seq Data. J. Integr. Bioinform. 8(2) (2011) - [j6]Michael Hawrylycz, Richard A. Baldock
Digital Atlasing and Standardization in the Mouse Brain. PLoS Comput. Biol. 7(2) (2011) - [c24]Rafael V. Carvalho
Spatio-temporal Modeling and Simulation of Mycobacterium Pathogenesis Using Petri Nets. BIONETICS 2011: 236-241 - [c23]Lu Cao
Pattern Recognition in High-Content Cytomics Screens for Target Discovery - Case Studies in Endocytosis. PRIB 2011: 330-342 - [c22]Julia Dmitrieva, Fons J. Verbeek:
Modular Approach for a New Ontology. WoMO 2011: 40-54 - [e1]Maarten H. Lamers
Human-Robot Personal Relationships - Third International Conference, HRPR 2010, Leiden, The Netherlands, June 23-24, 2010, Revised Selected Papers. Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering 59, Springer 2011, ISBN 978-3-642-19384-2 [contents] - 2010
- [j5]Mounia Belmamoune, Dome Potikanond, Fons J. Verbeek:
Mining and Analysing Spatio-Temporal Patterns of Gene Expression in an Integrative Database Framework. J. Integr. Bioinform. 7(3) (2010) - [j4]Yanju Zhang, Fons J. Verbeek:
Comparison and Integration of Target Prediction Algorithms for microRNA Studies. J. Integr. Bioinform. 7(3) (2010) - [c21]Laura M. F. Bertens, Jetty Kleijn, Maciej Koutny, Fons J. Verbeek:
Modelling Gradients using Petri Nets. ACSD/Petri Nets Workshops 2010: 39-53 - [c20]Alexander E. Nezhinsky, Johannes W. Kruisselbrink, Fons J. Verbeek:
Convex Shape Retrieval from Edge Maps by the use of an Evolutionary Algorithm. BIOINFORMATICS 2010: 221-225 - [c19]Amalia Kallergi
Video games for collection exploration: games for and out of data repositories. MindTrek 2010: 143-146 - [c18]Amalia Kallergi
Onto-Frogger: the making of. NordiCHI 2010: 691-694 - [c17]Ronnie Bathoorn, Monique C. M. Welten, Michael Richardson, Arno Siebes, Fons J. Verbeek:
Frequent Episode Mining to Support Pattern Analysis in Developmental Biology. PRIB 2010: 253-263 - [c16]Alexander E. Nezhinsky, Fons J. Verbeek:
Pattern Recognition for High Throughput Zebrafish Imaging Using Genetic Algorithm Optimization. PRIB 2010: 301-312 - [c15]Julia Dmitrieva, Fons J. Verbeek:
Creating a new Ontology: a Modular Approach. SWAT4LS 2010 - [c14]Julia Dmitrieva, Fons J. Verbeek:
Different geometries in ontology visualization. VDA 2010: 753007 - [i1]Julia Dmitrieva, Fons J. Verbeek:
Creating a new Ontology: a Modular Approach. CoRR abs/1012.1658 (2010)
2000 – 2009
- 2009
- [c13]Christina Papakonstantinou, Ioannis Panagiotou, Fons J. Verbeek:
The TicTag application: towards tag-based meta-search for browsing the web. BCS HCI 2009: 354-361 - [c12]Julia Dmitrieva, Fons J. Verbeek:
Node-Link and Containment Methods in Ontology Visualization. OWLED 2009 - [c11]Julia Dmitrieva, Fons J. Verbeek:
Integration of information from different ontologies. SWAT4LS 2009 - [c10]Amalia Kallergi, Fons J. Verbeek:
Onto-Frogger: Playing with Semantic Structure. SWAT4LS 2009 - [c9]Joris Slob, Amalia Kallergi, Fons J. Verbeek:
Observations on Semantic Annotation of Microscope Images for Life Sciences. SWAT4LS 2009 - [c8]Kuan Yan, Fons J. Verbeek, Sylvia Le Dévédec, Bob van de Water:
Cell Tracking and Data Analysis of in Vitro Tumour Cells from Time-lapse Image Sequences. VISAPP (1) 2009: 281-286 - 2008
- [j3]Mounia Belmamoune, Fons J. Verbeek:
Data Integration for Spatio-Temporal Patterns of Gene Expression of Zebrafish development: the GEMS database. J. Integr. Bioinform. 5(2) (2008) - [c7]Yanju Zhang, Jeroen S. de Bruin, Fons J. Verbeek:
miRNA target prediction through mining of miRNA relationships. BIBE 2008: 1-6 - [c6]Daniil Umanski, Walter A. Kosters, Fons J. Verbeek, Niels O. Schiller:
Integrating computer games in speech therapy for children who stutter. WOCCI 2008: 17 - 2007
- [j2]Joost Broekens, Walter A. Kosters, Fons J. Verbeek:
Affect, Anticipation, and Adaptation: Affect-Controlled Selection of Anticipatory Simulation in Artificial Adaptive Agents. Adapt. Behav. 15(4): 397-422 (2007) - [j1]Mounia Belmamoune, Fons J. Verbeek:
Developmental Anatomy Ontology of Zebrafish: an Integrative semantic framework. J. Integr. Bioinform. 4(3) (2007) - [c5]Joost Broekens, Walter A. Kosters, Fons J. Verbeek:
On Affect and Self-adaptation: Potential Benefits of Valence-Controlled Action-Selection. IWINAC (1) 2007: 357-366 - [c4]Julia Dmitrieva, Yun Bei, Fons J. Verbeek:
Ontological Context Visualization. OWLED 2007 - 2006
- [c3]Wouter Meuleman, Monique C. M. Welten, Fons J. Verbeek:
Construction of Correlation Networks with Explicit Time-Slices Using Time-Lagged, Variable Interval Standard and Partial Correlation Coefficients. CompLife 2006: 236-246 - 2000
- [c2]P. J. Boon, N. Eminovic, A. de Vos, B. Buitendijk, E. J. van Raaij, M. J. den Broeder, W. J. Hage, Fons J. Verbeek:
A Virtual Lab-Notebook for Multidimensional Microscopic Images. IV 2000: 187-191
1990 – 1999
- 1992
- [c1]Fons J. Verbeek:
Deformation correction using Euclidean contour distance maps. ICPR (3) 1992: 347-351
Coauthor Index
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