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International Journal of Bioinformatics Research and Applications (IJBRA), Volume 1
Volume 1, Number 1, 2005
- Wojciech Szpankowski, Wenhui Ren, Lukasz Szpankowski:
An optimal DNA segmentation based on the MDL principle. 3-17 - Tianhua Niu, Zhenjun Hu:
Dynamic visual data mining: biological sequence analysis and annotation using SeqVISTA. 18-30 - Suman Sundaresh, She-pin Hung, G. Wesley Hatfield, Pierre Baldi:
How noisy and replicable are DNA microarray data? 31-50 - Hyunsoo Kim, Jeff X. Zhou, Herbert C. Morse III
, Haesun Park:
A three-stage framework for gene expression data analysis by L1-norm support vector regression. 51-62 - Liangjiang Wang, Aidong Zhang, Murali Ramanathan:
BioStar models of clinical and genomic data for biomedical data warehouse design. 63-80 - Xiaohua Hu:
Mining and analysing scale-free proteinprotein interaction network. 81-101 - Kayvan Najarian, Krishna Gopalakrishnan, R. H. Zadeh:
Signal processing for functional analysis of protein mutants. 102-120 - Abdur Rahman, Albert Y. Zomaya:
An overview of protein-folding techniques: issues and perspectives. 121-143
Volume 1, Number 2, 2005
- Bhaskar DasGupta, Kishori M. Konwar, Ion I. Mandoiu, Alexander A. Shvartsman
Highly scalable algorithms for robust string barcoding. 145-161 - Ding-Zhu Du, Frank K. Hwang:
Identifying d positive clones in the presence of inhibitors. 162-168 - Zhenqiu Liu, Dechang Chen, Ying Xu, Jian Liu:
Logistic support vector machines and their application to gene expression data. 169-182 - Alan Wee-Chung Liew
Effective statistical features for coding and non-coding DNA sequence classification for yeast, C. elegans and human. 181-201 - Derek A. Ruths, Luay Nakhleh:
Recombination and phylogeny: effects and detection. 202-212 - Liang Chen, Sharmin Nilufar:
A districted neural network for start codon prediction. 213-220 - Dumitru Brinza, Jingwu He, Weidong Mao, Alexander Zelikovsky
Family trio phasing and missing data recovery. 221-229 - Beeta Masoumi, Marcel Turcotte:
Simultaneous alignment and structure prediction of three RNA sequences. 230-245
Volume 1, Number 3, 2005
- Jingwu He, Kelly Westbrooks, Alexander Zelikovsky
Linear reduction method for predictive and informative tag SNP selection. 249-260 - Bin Zhang, Steve Horvath:
Ridge regression based hybrid genetic algorithms for multi-locus quantitative trait mapping. 261-272 - Zheng Liu, James Borneman, Tao Jiang:
A software system for gene sequence database construction based on fast approximate string matching. 273-291 - Yair Horesh
A bottom-up clustering algorithm to detect ncRNA molecules with a common secondary structure. 292-304 - Juan Miguel García-Gómez
Corpus based learning of stochastic, context-free grammars combined with Hidden Markov Models for tRNA modelling. 305-318 - Robert E. Langlois, Alice Diec, Ognjen Perisic
Improved protein fold assignment using support vector machines. 319-334 - Trupti Joshi, Yu Chen, Nickolai Alexandrov, Dong Xu:
Cellular function prediction and biological pathway discovery in Arabidopsis thaliana using microarray data. 335-350 - Xiaolin Wu, Sorina Dumitrescu, Pravesh Biyani, Qiang Wu:
Fast chromosome karyotyping by auction algorithm. 351-362
Volume 1, Number 4, 2005
- Ferdinando Cicalese, Peter Damaschke, Ugo Vaccaro:
Optimal group testing algorithms with interval queries and their application to splice site detection. 363-388 - Israel Mark Martínez-Pérez, Gong Zhang, Zoya Ignatova
Biomolecular autonomous solution of the Hamiltonian path problem via hairpin formation. 389-398 - Yulan Liang, Arpad Kelemen:
Temporal gene expression classification with regularised neural network. 399-413 - Yingshu Li, My T. Thai, Zhen Liu, Weili Wu:
Protein-protein interaction and group testing in bipartite graphs. 414-419 - Wei-Mou Zheng:
Protein secondary structure prediction by combining hidden Markov models and sliding window scores. 420-428 - Osamu Maruyama, Akiko Matsuda, Satoru Kuhara:
Reconstructing phylogenetic trees of prokaryote genomes by randomly sampling oligopeptides. 429-446 - Xiaohua Hu, Illhoi Yoo, Xiaodan Zhang, Payal Nanavati, Debjit Das:
Wavelet transformation and cluster ensemble for gene expression analysis. 447-460 - Paola Bonizzoni, Gianluca Della Vedova
Experimental analysis of a new algorithm for partial haplotype completion. 461-473
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