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Neuroinformatics, Volume 10

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Volume 10, Number 1, January 2012

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Ivan Raikov, Erik De Schutter:
The Promise and Shortcomings of XML as an Interchange Format for Computational Models of Biology. 1-3
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Juan Eugenio Iglesias, Paul M. Thompson, Cheng-Yi Liu, Zhuowen Tu:
Fast Approximate Stochastic Tractography. 5-17
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Syam Gadde, Nicole Aucoin, Jeffrey S. Grethe, David B. Keator, Daniel S. Marcus, Steve Pieper:
XCEDE: An Extensible Schema for Biomedical Data. 19-32
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Wieslaw L. Nowinski, Chua Beng Choon, Guo Liang Yang, Guoyu Qian:
Three-Dimensional Interactive and Stereotactic Human Brain Atlas of White Matter Tracts. 33-55
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Jessica A. Turner, Angela R. Laird:
The Cognitive Paradigm Ontology: Design and Application. 57-66
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Robin Jennings, John D. Van Horn:
Publication Bias in Neuroimaging Research: Implications for Meta-Analyses. 67-80
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Peter V. Kochunov, William Rogers, Jean-François Mangin, Jack L. Lancaster:
A Library of Cortical Morphology Analysis Tools to Study Development, Aging and Genetics of Cerebral Cortex. 81-96
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Douglas M. Bowden, Evan Song, Julia Kosheleva, Mark F. Dubach:
NeuroNames: An Ontology for the BrainInfo Portal to Neuroscience on the Web. 97-114

Volume 10, Number 2, April 2012

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Giorgio A. Ascoli:
Twenty Questions for Neuroscience Metadata. 115-117
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Rong Chen, Edward Herskovits:
Graphical Model Based Multivariate Analysis (GAMMA): An Open-Source, Cross-Platform Neuroimaging Data Analysis Software Package. 119-127
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David N. Kennedy, Steven M. Hodge, Yong Gao, Jean A. Frazier, Christian Haselgrove:
The Internet Brain Volume Database: A Public Resource for Storage and Retrieval of Volumetric Data. 129-140
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C. J. Aine, Lori Sanfratello, Douglas M. Ranken, Elaine Best, J. A. MacArthur, T. Wallace, K. Gilliam, C. H. Donahue, R. Montaño, J. E. Bryant, A. Scott, Julia M. Stephen:
MEG-SIM: A Web Portal for Testing MEG Analysis Methods using Realistic Simulated and Empirical Data. 141-158
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L. E. Poh, Varsha Gupta, A. Johnson, R. Kazmierski, Wieslaw Lucjan Nowinski:
Automatic Segmentation of Ventricular Cerebrospinal Fluid from Ischemic Stroke CT Images. 159-172
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Deanne K. Thompson, Zohra M. Ahmadzai, Stephen J. Wood, Terrie E. Inder, Simon K. Warfield, Lex W. Doyle, Gary F. Egan:
Optimizing Hippocampal Segmentation in Infants Utilizing MRI Post-Acquisition Processing. 173-180
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Piotr Majka, Ewa Kublik, Grzegorz Furga, Daniel K. Wójcik:
Common Atlas Format and 3D Brain Atlas Reconstructor: Infrastructure for Constructing 3D Brain Atlases. 181-197
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Carl-Magnus Svensson, Stephen Coombes, Jonathan Westley Peirce:
Using Evolutionary Algorithms for Fitting High-Dimensional Models to Neuronal Data. 199-218
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Tsung-Ren Huang:
Boston-NeuroTalks Calendar 3.0: A Talk Database Powered by Collective Intelligence. 219-222

Volume 10, Number 3, July 2012

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David N. Kennedy:
The Benefits of Preparing Data for Sharing Even When You Don't. 223-224
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Kaiming Li, Lei Guo, Dajiang Zhu, Xintao Hu, Junwei Han, Tianming Liu:
Individual Functional ROI Optimization Via Maximization of Group-Wise Consistency of Structural and Functional Profiles. 225-242
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Oliver Schmitt, Peter Eipert:
neuroVIISAS: Approaching Multiscale Simulation of the Rat Connectome. 243-267
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Mikaël Naveau, Gaëlle Doucet, Nicolas Delcroix, Laurent Petit, Laure Zago, Fabrice Crivello, Gaël Jobard, Emmanuel Mellet, Nathalie Tzourio-Mazoyer, Bernard Mazoyer, Marc Joliot:
A Novel Group ICA Approach Based on Multi-scale Individual Component Clustering. Application to a Large Sample of fMRI Data. 269-285
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Mikael Djurfeldt:
The Connection-set Algebra - A Novel Formalism for the Representation of Connectivity Structure in Neuronal Network Models. 287-304
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Ferran Prados, Imma Boada, Miquel Feixas, Alberto Prats-Galino, Gerard Blasco, Josep Puig, Salvador Pedraza:
Information-Theoretic Approach for Automated White Matter Fiber Tracts Reconstruction. 305-318
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David N. Kennedy, Christian Haselgrove, Steven M. Hodge, Pallavi S. Rane, Nikos Makris, Jean A. Frazier:
CANDIShare: A Resource for Pediatric Neuroimaging Data. 319-322
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Paola Pergami, N. Seemaladinne, P. Martone:
A PC-Based Motor Control Task for Evaluation and Serial Monitoring of Upper Extremity Motor Function. 323-328

Volume 10, Number 4, October 2012

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Erik De Schutter, Giorgio A. Ascoli, David N. Kennedy:
Ten Years of Neuroinformatics. 329-330
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Dan Hall, Michael F. Huerta, Matthew J. McAuliffe, Gregory K. Farber:
Sharing Heterogeneous Data: The National Database for Autism Research. 331-339
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Simon S. Keller, Jan S. Gerdes, Siawoosh Mohammadi, Christoph Kellinghaus, Harald Kugel, Katja Deppe, Erich Bernd Ringelstein, Stefan Evers, Wolfram Schwindt, Michael Deppe:
Volume Estimation of the Thalamus Using Freesurfer and Stereology: Consistency between Methods. 341-350
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Karen E. Joyce, Satoru Hayasaka:
Development of PowerMap: a Software Package for Statistical Power Calculation in Neuroimaging Studies. 351-365
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Shu Liao, Guorong Wu, Dinggang Shen:
A Statistical Framework for Inter-Group Image Registration. 367-378
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Krissia Zawadzki, Christoph Feenders, Matheus P. Viana, Marcus Kaiser, Luciano da F. Costa:
Morphological Homogeneity of Neurons: Searching for Outlier Neuronal Cells. 379-389
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Juan Morales, Ruth Benavides-Piccione, Angel Rodríguez, Luis Pastor, Rafael Yuste, Javier DeFelipe:
Three-Dimensional Analysis of Spiny Dendrites Using Straightening and Unrolling Transforms. 391-407
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Martin Pyka, Alexander Balz, Andreas Jansen, Axel Krug, Eyke Hüllermeier:
A WEKA Interface for fMRI Data. 409-413

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