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18th WABI 2018: Helsinki, Finland
- Laxmi Parida, Esko Ukkonen:
18th International Workshop on Algorithms in Bioinformatics, WABI 2018, August 20-22, 2018, Helsinki, Finland. LIPIcs 113, Schloss Dagstuhl - Leibniz-Zentrum für Informatik 2018, ISBN 978-3-95977-082-8 - Front Matter, Table of Contents, Preface, Conference Organization. 0:i-0:xvi
- Hooman Zabeti, Tamon Stephen, Bonnie Berger, Leonid Chindelevitch
:
A Duality-Based Method for Identifying Elemental Balance Violations in Metabolic Network Models. 1:1-1:13 - Christina Boucher, Travis Gagie
Prefix-Free Parsing for Building Big BWTs. 2:1-2:16 - Nicola Prezza, Nadia Pisanti, Marinella Sciortino, Giovanna Rosone:
Detecting Mutations by eBWT. 3:1-3:15 - Jouni Sirén, Erik Garrison, Adam M. Novak
Haplotype-aware graph indexes. 4:1-4:13 - Riccardo Dondi, Manuel Lafond, Céline Scornavacca:
Reconciling Multiple Genes Trees via Segmental Duplications and Losses. 5:1-5:16 - Tamal K. Dey, Sayan Mandal
Protein Classification with Improved Topological Data Analysis. 6:1-6:13 - Barak Sternberg, Roded Sharan:
A Dynamic Algorithm for Network Propagation. 7:1-7:13 - Qiuyi (Richard) Zhang, Satish Rao, Tandy J. Warnow:
New Absolute Fast Converging Phylogeny Estimation Methods with Improved Scalability and Accuracy. 8:1-8:12 - Yohei M. Rosen, Benedict J. Paten:
An Average-Case Sublinear Exact Li and Stephens Forward Algorithm. 9:1-9:13 - Lavinia Egidi
External memory BWT and LCP computation for sequence collections with applications. 10:1-10:14 - Riku Walve, Pasi Rastas, Leena Salmela
Kermit: Guided Long Read Assembly using Coloured Overlap Graphs. 11:1-11:11 - Martin D. Muggli, Simon J. Puglisi
A Succinct Solution to Rmap Alignment. 12:1-12:16 - Till Hartmann
Spalter: A Meta Machine Learning Approach to Distinguish True DNA Variants from Sequencing Artefacts. 13:1-13:8 - Saugata Basu, Filippo Utro
Essential Simplices in Persistent Homology and Subtle Admixture Detection. 14:1-14:10 - Tuukka Norri
Minimum Segmentation for Pan-genomic Founder Reconstruction in Linear Time. 15:1-15:15 - Martin S. Engler
Multiple-Choice Knapsack for Assigning Partial Atomic Charges in Drug-Like Molecules. 16:1-16:13 - Stéphane Chrétien, Christophe Guyeux
l1-Penalised Ordinal Polytomous Regression Estimators with Application to Gene Expression Studies. 17:1-17:13 - Morteza Chalabi Hajkarim, Eli Upfal
Differentially Mutated Subnetworks Discovery. 18:1-18:14 - Ryan A. Leo Elworth, Chabrielle Allen, Travis Benedict, Peter Dulworth, Luay Nakhleh:
DGEN: A Test Statistic for Detection of General Introgression Scenarios. 19:1-19:13 - Mehrdad Mansouri, Julian Booth, Margaryta Vityaz, Cédric Chauve, Leonid Chindelevitch
PRINCE: Accurate Approximation of the Copy Number of Tandem Repeats. 20:1-20:13 - Mai Alzamel
Degenerate String Comparison and Applications. 21:1-21:14 - Nikolai Karpov, Salem Malikic, Md. Khaledur Rahman
A Multi-labeled Tree Edit Distance for Comparing "Clonal Trees" of Tumor Progression. 22:1-22:19 - Kai Dührkop
Heuristic Algorithms for the Maximum Colorful Subtree Problem. 23:1-23:14 - Mohammed El-Kebir
Parsimonious Migration History Problem: Complexity and Algorithms. 24:1-24:14 - Szymon Majewski
The Wasserstein Distance as a Dissimilarity Measure for Mass Spectra with Application to Spectral Deconvolution. 25:1-25:21
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