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4. WABI 2004: Bergen, Norway
- Inge Jonassen, Junhyong Kim:
Algorithms in Bioinformatics, 4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004, Proceedings. Lecture Notes in Computer Science 3240, Springer 2004, ISBN 3-540-23018-1 - Joel V. Earnest-DeYoung, Emmanuelle Lerat, Bernard M. E. Moret:
Reversing Gene Erosion - Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data. 1-13 - Anne Bergeron, Mathieu Blanchette, Annie Chateau, Cédric Chauve:
Reconstructing Ancestral Gene Orders Using Conserved Intervals. 14-25 - Martin Figeac
, Jean-Stéphane Varré:
Sorting by Reversals with Common Intervals. 26-37 - Jens Gramm:
A Polynomial-Time Algorithm for the Matching of Crossing Contact-Map Patterns. 38-49 - Tzvika Hartman, Roded Sharan:
A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals. 50-61 - Miklós Csürös:
Algorithms for Finding Maximal-Scoring Segment Sets (Extended Abstract). 62-73 - Manikandan Narayanan, Richard M. Karp:
Gapped Local Similarity Search with Provable Guarantees. 74-86 - Alberto Apostolico, Cinzia Pizzi:
Monotone Scoring of Patterns with Mismatches: (Extended Abstract). 87-98 - Morris Michael, Christoph Dieterich, Jens Stoye
Suboptimal Local Alignments Across Multiple Scoring Schemes. 99-110 - Uri Keich, Niranjan Nagarajan
A Faster Reliable Algorithm to Estimate the p-Value of the Multinomial llr Statistic. 111-122 - Benny Chor, Tamir Tuller:
Adding Hidden Nodes to Gene Networks (Extended Abstract). 123-134 - Doron Lipson, Amir Ben-Dor, Elinor Dehan, Zohar Yakhini
Joint Analysis of DNA Copy Numbers and Gene Expression Levels. 135-146 - Daichi Shigemizu, Osamu Maruyama:
Searching for Regulatory Elements of Alternative Splicing Events Using Phylogenetic Footprinting. 147-158 - Lev Soinov, Alexander Kanapin
Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation. 159-169 - Daniel G. Brown:
Multiple Vector Seeds for Protein Alignment. 170-181 - Stefan Balev:
Solving the Protein Threading Problem by Lagrangian Relaxation. 182-193 - Alexandra Shulman-Peleg, Shira Mintz, Ruth Nussinov, Haim J. Wolfson:
Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations. 194-205 - Stanislav Angelov, Sanjeev Khanna, Li Li, Fernando Pereira:
ATDD: An Algorithmic Tool for Domain Discovery in Protein Sequences. 206-217 - Vicky Choi, Pankaj K. Agarwal, Herbert Edelsbrunner, Johannes Rudolph:
Local Search Heuristic for Rigid Protein Docking. 218-229 - Nathan Edwards, Ross Lippert:
Sequence Database Compression for Peptide Identification from Tandem Mass Spectra. 230-241 - Jingwu He, Alexander Zelikovsky
Linear Reduction for Haplotype Inference. 242-253 - Daniel G. Brown, Ian M. Harrower:
A New Integer Programming Formulation for the Pure Parsimony Problem in Haplotype Analysis. 254-265 - Alessandro Panconesi, Mauro Sozio:
Fast Hare: A Fast Heuristic for Single Individual SNP Haplotype Reconstruction. 266-277 - Yao-Ting Huang
Approximation Algorithms for the Selection of Robust Tag SNPs. 278-289 - Behshad Behzadi, Jean-Marc Steyaert:
The Minisatellite Transformation Problem Revisited: A Run Length Encoded Approach. 290-301 - Jesper Jansson, See-Kiong Ng, Wing-Kin Sung, Hugo Willy:
A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences Through Alignment. 302-313 - Daniel G. Brown, Alexander K. Hudek:
New Algorithms for Multiple DNA Sequence Alignment. 314-325 - Mukund Sundararajan, Michael Brudno, Kerrin S. Small
Chaining Algorithms for Alignment of Draft Sequence. 326-337 - Guoliang Li, Tze-Yun Leong, Louxin Zhang:
Translation Initiation Sites Prediction with Mixture Gaussian Models. 338-349 - Tanya Y. Berger-Wolf
Online Consensus and Agreement of Phylogenetic Trees. 350-361 - Maciej Liskiewicz, Hemant J. Purohit, Dhananjay V. Raje:
Relation of Residues in the Variable Region of 16S rDNA Sequences and Their Relevance to Genus-Specificity. 362-373 - Denis Bertrand, Olivier Gascuel:
Topological Rearrangements and Local Search Method for Tandem Duplication Trees. 374-387 - Daniel H. Huson, Tobias Dezulian, Tobias H. Klöpper, Mike A. Steel:
Phylogenetic Super-networks from Partial Trees. 388-399 - Stanislav Angelov, Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim, Li-San Wang:
Genome Identification and Classification by Short Oligo Arrays. 400-411 - Julien Allali, Marie-France Sagot:
Novel Tree Edit Operations for RNA Secondary Structure Comparison. 412-425 - Brona Brejová, Daniel G. Brown, Tomás Vinar:
The Most Probable Labeling Problem in HMMs and Its Application to Bioinformatics. 426-437 - Sing-Hoi Sze, Songjian Lu, Jianer Chen:
Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding. 438-449 - Hideo Bannai, Heikki Hyyrö, Ayumi Shinohara
Finding Optimal Pairs of Patterns. 450-462 - Shunsuke Inenaga, Teemu Kivioja, Veli Mäkinen:
Finding Missing Patterns. 463-474
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