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14. RECOMB 2010: Lisbon, Portugal
- Bonnie Berger
:
Research in Computational Molecular Biology, 14th Annual International Conference, RECOMB 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings. Lecture Notes in Computer Science 6044, Springer 2010, ISBN 978-3-642-12682-6 - Nir Atias, Roded Sharan:
An Algorithmic Framework for Predicting Side-Effects of Drugs. 1-14 - Ferhat Ay
SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings. 15-30 - Sivan Bercovici, Dan Geiger:
Admixture Aberration Analysis: Application to Mapping in Admixed Population Using Pooled DNA. 31-49 - Sivan Bercovici, Itai Sharon
Pathway-Based Functional Analysis of Metagenomes. 50-64 - José Caldas
Hierarchical Generative Biclustering for MicroRNA Expression Analysis. 65-79 - Salim A. Chowdhury, Rod K. Nibbe, Mark R. Chance, Mehmet Koyutürk
Subnetwork State Functions Define Dysregulated Subnetworks in Cancer. 80-95 - Manfred Claassen
Proteome Coverage Prediction for Integrated Proteomics Datasets. 96-109 - Timothy Danford, Robin D. Dowell
Discovering Regulatory Overlapping RNA Transcripts. 110-122 - Constantinos Daskalakis, Sébastien Roch:
Alignment-Free Phylogenetic Reconstruction. 123-137 - Jianxing Feng, Wei Li, Tao Jiang:
Inference of Isoforms from Short Sequence Reads. 138-157 - Bjarni V. Halldórsson
The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. 158-173 - Michael Hirsch, Bernhard Schölkopf, Michael Habeck:
A New Algorithm for Improving the Resolution of Cryo-EM Density Maps. 174-188 - Richard Jang, Xin Gao
Towards Automated Structure-Based NMR Resonance Assignment. 189-207 - Kyowon Jeong, Sangtae Kim, Nuno Bandeira, Pavel A. Pevzner:
Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra. 208-232 - Wei-Chun Kao, Yun S. Song:
naiveBayesCall: An Efficient Model-Based Base-Calling Algorithm for High-Throughput Sequencing. 233-247 - David R. Kelley, Carl Kingsford:
Extracting Between-Pathway Models from E-MAP Interactions Using Expected Graph Compression. 248-262 - Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka:
Simultaneous Identification of Causal Genes and Dys-Regulated Pathways in Complex Diseases. 263-280 - Geoffrey Koh, David Hsu, P. S. Thiagarajan:
Incremental Signaling Pathway Modeling by Data Integration. 281-296 - Adam Kowalczyk, Justin Bedo
The Poisson Margin Test for Normalisation Free Significance Analysis of NGS Data. 297-309 - Christos Kozanitis, Christopher T. Saunders, Semyon Kruglyak, Vineet Bafna
Compressing Genomic Sequence Fragments Using SlimGene. 310-324 - Fumei Lam, Charles H. Langley, Yun S. Song:
On the Genealogy of Asexual Diploids. 325-340 - Jonathan Laserson, Vladimir Jojic, Daphne Koller:
Genovo: De Novo Assembly for Metagenomes. 341-356 - Seunghak Lee, Eric P. Xing, Michael Brudno:
MoGUL: Detecting Common Insertions and Deletions in a Population. 357-368 - Navodit Misra, Guy E. Blelloch, R. Ravi, Russell Schwartz
Generalized Buneman Pruning for Inferring the Most Parsimonious Multi-state Phylogeny. 369-383 - Laurent Noé
Seed Design Framework for Mapping SOLiD Reads. 384-396 - Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin:
Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments. 397-409 - Benedict Paten, Mark Diekhans
Cactus Graphs for Genome Comparisons. 410-425 - Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin:
IDBA - A Practical Iterative de Bruijn Graph De Novo Assembler. 426-440 - Sheila M. Reynolds, Zhiping Weng, Jeff A. Bilmes, William Stafford Noble:
Predicting Nucleosome Positioning Using Multiple Evidence Tracks. 441-455 - Barna Saha, Allison Hoch, Samir Khuller, Louiqa Raschid, Xiao-Ning Zhang
Dense Subgraphs with Restrictions and Applications to Gene Annotation Graphs. 456-472 - Raheleh Salari, Mathias Möhl, Sebastian Will, Süleyman Cenk Sahinalp, Rolf Backofen:
Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding. 473-490 - Manu N. Setty, Alexander Gusev, Itsik Pe'er:
HLA Type Inference via Haplotypes Identical by Descent. 491-505 - Fabio Vandin, Eli Upfal
Algorithms for Detecting Significantly Mutated Pathways in Cancer. 506-521 - Christian Widmer, Jose Leiva, Yasemin Altun, Gunnar Rätsch
Leveraging Sequence Classification by Taxonomy-Based Multitask Learning. 522-534 - Yu-Wei Wu
A Novel Abundance-Based Algorithm for Binning Metagenomic Sequences Using l-Tuples. 535-549 - Jianyang Zeng, Pei Zhou
A Markov Random Field Framework for Protein Side-Chain Resonance Assignment. 550-570 - Benny Chor, David Horn, Nick Goldman, Yaron Levy, Tim Massingham:
Genomic DNA k-mer Spectra: Models and Modalities. 571 - Richard A. Goldstein, Mario dos Reis, Asif U. Tamuri, Alan J. Hay:
Deciphering the Swine-Flu Pandemics of 1918 and 2009. 572-573 - Raluca Gordân, Alexander J. Hartemink, Martha L. Bulyk:
Distinguishing Direct versus Indirect Transcription Factor-DNA Interactions. 574 - Jean-Denis Benazet, Mirko Bischofberger, Eva Tiecke, Alexandre Gonalves, James F. Martin, Aime Zuniga, Felix Naef, Rolf Zeller:
A Self-regulatory System of Interlinked Signaling Feedback Loops Controls Mouse Limb Patterning. 575-576 - Saumyadipta Pyne, Xinli Hu, Kui Wang, Elizabeth Rossin, Tsung-I Lin, Lisa Maier, Clare Baecher-Allan, Geoffrey J. McLachlan, Pablo Tamayo, David Hafler, Philip L. De Jager, Jill P. Mesirov:
Automated High-Dimensional Flow Cytometric Data Analysis. 577 - Yonit Halperin, Chaim Linhart, Igor Ulitsky, Ron Shamir:
Discovering Transcriptional Modules by Combined Analysis of Expression Profiles and Regulatory Sequences. 578-579
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