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ICBO 2021: Bozen-Bolzano, Italy
- Janna Hastings, Adrien Barton:
Proceedings of the International Conference on Biomedical Ontologies 2021 co-located with the Workshop on Ontologies for the Behavioural and Social Sciences (OntoBess 2021) as part of the Bolzano Summer of Knowledge (BOSK 2021), Bozen-Bolzano, Italy, 16-18 September, 2021. CEUR Workshop Proceedings 3073, CEUR-WS.org 2022
Main Research Track Papers
- Fumiaki Toyoshima, Adrien Barton, Paul Fabry, Jean-François Ethier:
Representing Gender in Ontologies: A Dispositional Perspective. 1-12 - Melissa D. Clarkson, Landon T. Detwiler, Kristen M. Platt, Steven K. Roggenkamp:
Assessing the Consistency of Modeling in Complex Ontologies: A Study of the Musculoskeletal System of the Foundational Model of Anatomy. 13-23 - Victor Fuentes, Tomas Martin, Petko Valtchev, Abdoulaye Baniré Diallo, René Lacroix, Maxime Leduc:
Toward A Dairy Ontology to Support Precision Farming. 24-35 - Paul Fabry, François Goyer, Adrien Barton, Jean-François Ethier:
An Ontological Analysis of Health Procedure Information. 36-47
Early Career Papers
- Lauren E. Chan, Nicole A. Vasilevsky, Anne E. Thessen, Nicolas Matentzoglu, William D. Duncan, Christopher J. Mungall, Melissa A. Haendel:
A Semantic Model Leveraging Pattern-based Ontology Terms to Bridge Environmental Exposures and Health Outcomes. 48-55 - Mirna El Ghosh, Fethi Ghazouani, Benjamin Birene, Elise Akan, Jean Charlet, Ferdinand Dhombres:
Modeling Logical Definitions in Biomedical Ontologies by Reusing Ontology Design Patterns. 56-62 - Irshad Ally, Werner Ceusters:
Challenges in Realism-Based Ontology Design: A Case Study on Creating an Ontology for Motivational Learning Theories. 63-69 - Yingtong Liu, Wenjun Ju, Becky Steck, Sanjay Jain, Matthias Kretzler, Yongqun He:
Ontology-based Modeling, Representation, and Analysis of Biomarkers in Healthy and Disease Kidney Tissue. 70-76 - Eric C. Merrell, Robert M. Kelly:
Improving Biomedical Data by Improving the Information Artifact Ontology. 77-83
Short Papers
- Núria Queralt-Rosinach, César Henrique Bernabé, Qinqin Long, Rajaram Kaliyaperumal, Marco Roos:
LUMC Clinical Ontology for Biomedical Research. 84-88 - Wenjin Zhang, Nathan J. Edwards:
GNOme - Glycan Naming and Subsumption Ontology. 89-93 - Maria Ausilia Napoli Spatafora:
HAO: Hearing Aid Ontology. 94-98 - Daniel Lyman, Darren A. Natale, Lynn M. Schriml, Kriston Anton, Daniel C. Crichton, Raja Mazumder:
Analysis of Biomarker Data Towards Development of a Molecular Biomarker Ontology. 99-103 - Nicole A. Vasilevsky, Sabrina Toro, Nicolas Matentzoglu, Dazhi Jiao, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall:
Reclassification of Infectious Disease in the Mondo Disease Ontology. 104-109 - Guirui Huang, Suyuan Peng, Luxia Zhang, Yongqun He:
Identification and Ontology Term Enrichment Analysis of Genes Associated with COVID-19 and Acute Kidney Disease. 110-115 - Easheta Shah, Roshan Desai, Suyuan Peng, Luxia Zhang, Yongqun He:
Ontology Modeling and Analysis of COVID-19-associated Acute Kidney Injury and Its Underlying Molecular Mechanisms. 116-121 - Asiyah Yu Lin, Yuki Yamagata, William D. Duncan, Leigh C. Carmody, Tatsuya Kushida, Hiroshi Masuya, John Beverley, Biswanath Dutta, Michael DeBellis, Zoë May Pendlington, Paola Roncaglia, Yongqun He:
A Community Effort for COVID-19 Ontology Harmonization. 122-127
Extended Abstracts for Flash Presentations
- Patrice Buche, Julien Cufi, Stéphane Dervaux, Liliana Ibanescu, Alrick Oudot, Magalie Weber:
Managing Incompleteness and Validating the Content of Nutritional Food Sources using FoodOn as Pivot Ontology. 128-130 - Marcin P. Joachimiak, Harshad Hegde, William D. Duncan, Justin T. Reese, Luca Cappelletti, Anne E. Thessen, Christopher J. Mungall:
KG-Microbe: A Reference Knowledge-Graph and Platform for Harmonized Microbial Information. 131-133 - Phillip Lord, Jennifer D. Warrender:
Horned-OWL: Building Ontologies at Big Data Scale. 134-136 - Susan M. Bello, Anna V. Anagnostopoulos, Cynthia L. Smith:
Expanding the Mammalian Phenotype Ontology to Meet the Needs of COVID-19 Model Curation. 137-140 - William D. Duncan, Faiza Ahmed, Fnu Anubhav, Jeffrey Baumes, Jonathan Beezley, Mark Borkum, Lisa M. Bramer, Shane Canon, Patrick S. G. Chain, Danielle Christianson, Yuri Corilo, Karen Davenport, Brandon Davis, Meghan Drake, Kjiersten Fagnan, Mark Flynn, David Hays, Bin Hu, Marcel Huntemann, Julia Kelliher, Sofya Lebedeva, Po-E Li, Mary Lipton, Chien-Chi Lo, Douglas Mans, Stanton Martin, Lee Ann McCue, David Millard, Kayd Miller, Nigel Mouncey, Paul D. Piehowski, Elais Player Jackson, Anastasiya Prymolenna, Samuel O. Purvine, T. B. K. Reddy, Rachel Richardson, Migun Shakya, Montana Smith, Jagadish Chandrabose Sundaramurthi, Mark A. Miller, Deepak R. Unni, Pajau Vangay, Bruce Wilson, Donald Winston, Elisha M. Wood-Charlson, Yan Xu, Emiley A. Eloe-Fadrosh, Christopher J. Mungall:
Leveraging Ontologies within the National Microbiome Data Collaborative. 141-143 - Mark A. Miller, Rebecca C. Jackson, Christopher J. Mungall:
Bringing Schemas to the Schemaless. 144-147 - Sierra A. T. Moxon, Harold Solbrig, Deepak R. Unni, Dazhi Jiao, Richard M. Bruskiewich, James P. Balhoff, Gaurav Vaidya, William D. Duncan, Harshad Hegde, Mark A. Miller, Matthew H. Brush, Nomi L. Harris, Melissa A. Haendel, Christopher J. Mungall:
The Linked Data Modeling Language (LinkML): A General-Purpose Data Modeling Framework Grounded in Machine-Readable Semantics. 148-151 - Alexander P. Cox, Kiernan L. Johnson, Lauren Wishnie, Aaron S. Kemp, Jonathan P. Bona, Alexander D. Diehl:
Recent Refinements of the NeuroPsychological Testing Ontology. 152-154
Workshop on Ontologies for the Behavioural and Social Sciences
- Janna Hastings, Robert West, Susan Michie, Caitlin Notley, Sharon Cox:
Ontologies for the Behavioural and Social Sciences: Opportunities and Challenges. 155-161 - Mark Fox, Kate Ruff:
CIDS: An Ontology for Representing Social and Environmental Impact. 162-173 - Adrien Barton:
Foundations for an Ontology of Nudges. 174-183
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