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13th eScience 2017: Auckland, New Zealand
- 13th IEEE International Conference on e-Science, e-Science 2017, Auckland, New Zealand, October 24-27, 2017. IEEE Computer Society 2017, ISBN 978-1-5386-2686-3
Paper Session 1A: Deep Learning: From Dentistry to Satellites
- Seiya Murata, Chonho Lee, Chihiro Tanikawa
, Susumu Date
Towards a Fully Automated Diagnostic System for Orthodontic Treatment in Dentistry. 1-8 - Jessica Block, Mehrdad Yazdani, Mai H. Nguyen, Daniel Crawl, Marta Jankowska, John Graham, Thomas A. DeFanti, Ilkay Altintas:
An Unsupervised Deep Learning Approach for Satellite Image Analysis with Applications in Demographic Analysis. 9-18 - Travis Desell:
Developing a Volunteer Computing Project to Evolve Convolutional Neural Networks and Their Hyperparameters. 19-28 - Min Gao, Yang Lin, Richard O. Sinnott:
A Mobile Application for Plant Recognition through Deep Learning. 29-38
Paper Session 1B: Parallel Computing and Information Extraction
- Delmar B. Davis, Jonathan Featherston, Munehiro Fukuda, Hazeline U. Asuncion:
Data Provenance for Multi-Agent Models. 39-48 - Yishui Wu, Shuang Qiu, Qiong Luo
Accelerating Exact Protein Structure Alignment with Graphics Processors. 49-58 - Tekin Bicer
Real-Time Data Analysis and Autonomous Steering of Synchrotron Light Source Experiments. 59-68 - Icaro Alzuru, Andréa M. Matsunaga, Maurício O. Tsugawa, José A. B. Fortes:
SELFIE: Self-Aware Information Extraction from Digitized Biocollections. 69-78
Paper Session 2A: Cloud Computing
- Alejandro Bugacov, Karl Czajkowski
Experiences with DERIVA: An Asset Management Platform for Accelerating eScience. 79-88 - Muhammed Tawfiqul Islam
dSpark: Deadline-Based Resource Allocation for Big Data Applications in Apache Spark. 89-98
Paper Session 2B: Crowdsourcing
- Connor Bowley, Marshall Mattingly, Andrew Barnas, Susan Ellis-Felege, Travis Desell:
Toward Using Citizen Scientists to Drive Automated Ecological Object Detection in Aerial Imagery. 99-108 - Roselyne B. Tchoua, Kyle Chard, Debra J. Audus, Logan T. Ward, Joshua Lequieu
Towards a Hybrid Human-Computer Scientific Information Extraction Pipeline. 109-118
Paper Session 3A: Workflow and Frameworks
- Amani Abu Jabal, Elisa Bertino, Geeth de Mel:
Provenance-Based Scientific Workflow Search. 119-127 - Muhammad Hafizhuddin Hilman
Task-Based Budget Distribution Strategies for Scientific Workflows with Coarse-Grained Billing Periods in IaaS Clouds. 128-137 - Juan Sebastian Beleno Diaz, Claudia Bauzer Medeiros:
WorkflowHunt: Combining Keyword and Semantic Search in Scientific Workflow Repositories. 138-147 - Zhengchun Liu
A Mathematical Programming- and Simulation-Based Framework to Evaluate Cyberinfrastructure Design Choices. 148-157
Paper Session 3B: People, Birds, and Frogs
- Yashar Najaflou, Kris Bubendorfer:
In Pursuit of the Wisest: Building Cost-Effective Teams of Experts. 158-167 - Philip Eichinski, Paul Roe:
Clustering and Visualization of Long-Duration Audio Recordings for Rapid Exploration Avian Surveys. 168-176 - Tshering Dema, Liang Zhang, Michael Towsey, Anthony Truskinger
An Investigation into Acoustic Analysis Methods for Endangered Species Monitoring: A Case of Monitoring the Critically Endangered White-Bellied Heron in Bhutan. 177-186 - Jie Xie, Rui Zeng Changliang Xu, Jinglan Zhang, Paul Roe:
Multi-Label Classification of Frog Species via Deep Learning. 187-193
Paper Session 4A: Applications: From Humanities to Fruit Flies
- David De Roure
Experimental Humanities: An Adventure with Lovelace and Babbage. 194-201 - Matheus Macedo Leonardo, Sandra Avila
Mid-level Image Representation for Fruit Fly Identification (Diptera: Tephritidae). 202-209 - Lavanya Ramakrishnan, Daniel K. Gunter
Ten Principles for Creating Usable Software for Science. 210-218
Paper Session 4B: Computing Platforms
- Salman Zubair Toor, Mathias Lindberg, Ingemar Falman, Andreas Vallin, Olof Mohill, Pontus Freyhult, Linus Nilsson, Martin Agback, Lars Viklund, Henric Zazzik, Ola Spjuth, Marco Capuccini
SNIC Science Cloud (SSC): A National-Scale Cloud Infrastructure for Swedish Academia. 219-227 - Mike Simpson, Simon Woodman, Hugo Hiden, Sebastian Stein
A Platform for the Analysis of Qualitative and Quantitative Data about the Built Environment and Its Users. 228-237 - David Abramson
A Metropolitan Area Infrastructure for Data Intensive Science. 238-247
Paper Session 5A: Repositories
- Chengzan Li, Yanfei Hou
ScienceDB: A Public Multidisciplinary Research Data Repository for eScience. 248-255 - Hwajung Kim, Heon Young Yeom:
Improving Small File I/O Performance for Massive Digital Archives. 256-265 - José Manuél Gómez-Pérez, Raúl Palma, Andrés García-Silva:
Towards a Human-Machine Scientific Partnership Based on Semantically Rich Research Objects. 266-275
Paper Session 5B: Workflow and Workloads
- Matteo Turilli
Evaluating Distributed Execution of Workloads. 276-285 - Hoang Anh Nguyen
A Computational Pipeline for the IUCN Risk Assessment for Meso-American Reef Ecosystem. 286-294 - Danila Oleynik
High-Throughput Computing on High-Performance Platforms: A Case Study. 295-304
Paper Session 6A: Processing Pipelines: From Plants to Gravitational Waves
- Greice Cristina Mariano, Natalia Costa Soares, Leonor Patricia Cerdeira Morellato
Change Frequency Heatmaps for Temporal Multivariate Phenological Data Analysis. 305-314 - Ugur Çayoglu
Adaptive Lossy Compression of Complex Environmental Indices Using Seasonal Auto-Regressive Integrated Moving Average Models. 315-324 - Lawrence Buckingham, Timothy Chappell, James M. Hogan, Shlomo Geva:
Similarity Projection: A Geometric Measure for Comparison of Biological Sequences. 325-334 - Eliu A. Huerta
BOSS-LDG: A Novel Computational Framework That Brings Together Blue Waters, Open Science Grid, Shifter and the LIGO Data Grid to Accelerate Gravitational Wave Discovery. 335-344
Paper Session 6B: Visualization: From Networks to Archeology
- Daniel Kaltenthaler, Johannes-Y. Lohrer, Ptolemaios D. Paxinos, Daniel Hammerle, Henriette Obermaier, Peer Kröger:
TaRDIS, a Visual Analytics System for Spatial and Temporal Data in Archaeo-Related Disciplines. 345-353 - Samuel Thomas Smith, James Michael Hogan, Xin-Yi Chua
Iterative Design and Evaluation of Regulatory Network Visualisation at Scale. 354-363 - Indira Gutierrez-Polo, Yan Zhao, Shannon Bradley, Eugene Roeder, Michelle Pitcel, Kristin TePas, Paris Collingsworth
Monitoring Water Quality in the Great Lakes Leveraging Geo-Temporal Cyberinfrastructure. 364-373 - Dai Hai Ton That, Gabriel Fils, Zhihao Yuan, Tanu Malik:
Sciunits: Reusable Research Objects. 374-383
Paper Session 7A: Stream Processing: From IOT to Synchrotron
- Eduard Gibert Renart, Daniel Balouek-Thomert, Xuan Hu, Jie Gong, Manish Parashar:
Online Decision-Making Using Edge Resources for Content-Driven Stream Processing. 384-392 - Tong Shu, Chase Q. Wu:
Energy-Efficient Dynamic Scheduling of Deadline-Constrained MapReduce Workflows. 393-402 - Shilpa Chaturvedi, Sahil Tyagi, Yogesh Simmhan
Collaborative Reuse of Streaming Dataflows in IoT Applications. 403-412
Paper Session 7B: Infrastructure
- Richard Palmer, Kheeran Dharmawardena
Adapting Enterprise Architecture for eScience. 413-422 - Fábio Diniz Rossi
Dynamic Network Bandwidth Resizing for Big Data Applications. 423-431
Poster Papers
- Catherine A. Buell, William P. Seeley, Ricky J. Sethi
A Framework for Computing Artistic Style Using Artistically Relevant Features. 432-433 - Maram Abdulrahman Almaghrabi, Girija Chetty
A Novel Data Mining Testbed for User Centred Modelling and Personalisation of Digital Library Services. 434-435 - Eun-Kyu Byun, Junehawk Lee
Accelerating Genome Sequence Alignment on Hadoop on Lustre Environment. 436-437 - Erik Tjong Kim Sang, Herbert Kruitbosch
Determining the Function of Political Tweets. 438-439 - Ganesh Selvaraj, Gerald Weber, Christof Lutteroth
Efficient Program Analyses Using Deductive and Semantic Methodologies. 440-441 - Andrés García-Silva, Raúl Palma, José Manuél Gómez-Pérez:
Ensuring the Quality of Research Objects in the Earth Science Domain. 442-443 - Mohan Ramamurthy:
Geoscience Cyberinfrastructure in the Cloud: Data-Proximate Computing to Address Big Data and Open Science Challenges. 444-445 - Gilberto Zonta Pastorello, Dan Gunter
Hunting Data Rogues at Scale: Data Quality Control for Observational Data in Research Infrastructures. 446-447 - David Phillip Nickerson, Peter John Hunter:
Introducing the Physiome Journal: Improving Reproducibility, Reuse, and Discovery of Computational Models. 448-449 - Jung-Ho Um, Sunggeun Han, Hyunwoo Kim, Kyongseok Park:
Massive OceanColor Data Processing and Analysis System: TuPiX-OC. 450-451 - José Manuél Gómez-Pérez, Chuck Meertens, Fran Boler, Henry Loescher, Christine Laney
Research Objects for Interworkability among Global Environmental and Geophysical Data. 452-453 - Andrés García-Silva, Raúl Palma, José Manuél Gómez-Pérez:
Semantic Technologies and Text Analysis in Support of Scientific Knowledge Reuse. 454-455 - Ryan Chard, Kyle Chard, Steven Tuecke, Ian T. Foster:
Software Defined Cyberinfrastructure for Data Management. 456-457 - Lev Lafayette, Bernd Wiebelt:
Spartan and NEMO: Two HPC-Cloud Hybrid Implementations. 458-459 - Raúl Palma, Marcin Krystek, José Manuél Gómez-Pérez, Andrés García-Silva, Sergio Ferraresi, Simone Mantovani, Serena Avolio, Sergio De Gioia
Supporting Research and Operational Earth Science Portals through ROHub. 460-461 - E. Wes Bethel:
Towards a Data-Centric Research and Development Roadmap for Large-Scale Science User Facilities. 462-464 - Alexander Pletzer, Wolfgang Hayek, Chris Scott, Brian Corrie, Georgina Rae:
How NeSI Helps Users Run Better and Faster on New Zealand's Supercomputing Platforms. 465-466 - Gi-Myeong Ryu, Jung-Hun Shin, Jeong-Cheol Lee, Sik Lee, Kumwon Cho:
Consideration of Improvement in the Educational Activities Using Web-Based Computational Science Platform. 467-468 - Yashar Najaflou, Kris Bubendorfer:
A Large Scholarly Corpus: A Bird's-Eye View. 469-470
Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE5.2)
- Alper Alimoglu
Design of a Smart Contract Based Autonomous Organization for Sustainable Software. 471-476 - Sandra Gesing, Michael G. Zentner, Juliana Casavan, Betsy Hillery, Mihaela Vorvoreanu, Randy W. Heiland, Suresh Marru, Marlon E. Pierce
Science Gateways Incubator: Software Sustainability Meets Community Needs. 477-485 - Udit Nangia, Daniel S. Katz
Understanding Software in Research: Initial Results from Examining Nature and a Call for Collaboration. 486-487 - Bruce R. Childers, Panos K. Chrysanthis
Artifact Evaluation: Is It a Real Incentive? 488-489
Safe Data Paradigms and Platforms: Enabling Collaborative Analysis of Sensitive Data
- Adam Brinckman, Donal Luc, Jarek Nabrzyski, Gary L. Neidig, Joel D. Neidig, Tyler A. Puckett, Swapna Krishnakumar Radha, Ian J. Taylor:
A Comparative Evaluation of Blockchain Systems for Application Sharing Using Containers. 490-497 - Yadu N. Babuji, Kyle Chard, Eamon Duede, Ian T. Foster:
Safe Collections and Stewardship on Cloud Kotta. 498-503 - Tyler J. Skluzacek, Suhail Rehman, Ian T. Foster:
Safe Double Blind Studies as a Service. 504-509 - Karl Czajkowski
ERMRest: A Collaborative Data Catalog with Fine Grain Access Control. 510-517 - Muhammad Rizwan Asghar
A Review of Privacy and Consent Management in Healthcare: A Focus on Emerging Data Sources. 518-522
BigDig: High Throughput Digitization for Natural History Collections
- Riitta Tegelberg, Jere Kahanpaa, Janne Karppinen, Tero Mononen, Zhenzhe Wu, Hannu Saarenmaa
Mass Digitization of Individual Pinned Insects Using Conveyor-Driven Imaging. 523-527 - Pierre-Yves Gagnier
Automatic Reconstruction of Polygon Triangulation for Mounted Skeleton Point Cloud. 528-532 - Dante Abate
3D Scientific Visualisation of 19th Century Glass Replicas of Invertebrates. 533-541 - Mark Hereld, Nicola J. Ferrier
Designing a High-Throughput Pipeline for Digitizing Pinned Insects. 542-550 - Chia-Kai Yeh, Fengqiang Li, Gianluca Pastorelli
Shape-from-Shifting: Uncalibrated Photometric Stereo with a Mobile Device. 551-558 - Chuong V. Nguyen
Towards High-Throughput 3D Insect Capture for Species Discovery and Diagnostics. 559-560
Environmental Computing Workshop (ECW)
- Adrian Jose Sabado, Geoffrey Solano
Modelling the Coverage of Dipterocarp Trees in Central Visayas, Philippines. 561-565
International Workshop on Workflow Science (WoWS)
- Anirban Mandal
Toward Prioritization of Data Flows for Scientific Workflows Using Virtual Software Defined Exchanges. 566-575 - Satyabrata Sen
On Analytics of File Transfer Rates over Dedicated Wide-Area Connections. 576-585 - Alok Singh, Eric G. Stephan
Deep Learning on Operational Facility Data Related to Large-Scale Distributed Area Scientific Workflows. 586-591 - Ali Reza Zamani, Moustafa AbdelBaky, Daniel Balouek-Thomert, Ivan Rodero
Supporting Data-Driven Workflows Enabled by Large Scale Observatories. 592-595
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