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BIOCOMP 2007: Las Vegas, Nevada, USA
- Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang:
International Conference on Bioinformatics & Computational Biology, BIOCOMP 2007, Volume I, June 25-28, 2007, Las Vegas Nevada, USA. CSREA Press 2007, ISBN 1-60132-040-X
Sequence and Structure Alignment of Macro Molecules
- Lucian Ilie, Silvana Ilie:
Long spaced seeds for finding similarities between biological sequences. BIOCOMP 2007: 3-8 - Chiyang Huang, Yuh-Jyh Hu:
A Two-stage Approach to Finding Common Structure Elements in Unaligned RNA Sequences. BIOCOMP 2007: 9-15 - Zhiyu Zhao, Bin Fu:
A Flexible Algorithm for Pairwise Protein Structure Alignment. BIOCOMP 2007: 16-22 - Alper Küçükural, Osman Ugur Sezerman:
Potential Use of Graph Theoretical Properties of Protein Structures in Structural Alignment. BIOCOMP 2007: 23-30
Biomolecular Pathways and System Biology
- Amitava Karmaker, Stephen Harris, Stephen Kwek:
Identification of cis-Regulatory Elements from Cross-Genome Comparison and Gene Expression Profile Analysis. BIOCOMP 2007: 31-36 - Rui Chang, Martin Stetter:
A Knowledge-based Dynamic Bayesian Framework Towards Molecular Network Modeling and Quantitative Prediction. BIOCOMP 2007: 37-43 - Jacek P. Kukluk, Chang Hun You, Lawrence B. Holder, Diane J. Cook:
Learning Node Replacement Graph Grammars in Metabolic Pathways. BIOCOMP 2007: 44-50 - Hao Xiong, Yoonsuck Choe:
Constrained Estimation of Genetic Networks. BIOCOMP 2007: 51-57 - Thierry Antoine-Santoni, Fabrice Bernardi, François Giamarchi:
General Methodology for Metabolic Pathways Modeling and Simulation Using Discrete Event Approach. Example on Glycolysis of Yeast. BIOCOMP 2007: 58-64 - Shih-Wu Cheng, Hsiang-Yuan Yeh, Yu-Chun Lin, Shih-Fang Lin, Von-Wun Soo:
Inferring Gene Regulatory Networks from Microarray Data Based on Transcription Factor Analysis and Conditional Independency. BIOCOMP 2007: 65-71 - Hanuman Thota, Nageswara rao Kunjam, Suresh Babu Changalasetty, Allam Appa Rao, Ramachandra Sridhar Gumpeny, Undurti N. Das, Reddi Kirankumar, T. K. Rama Krishna Rao:
Aldose Reductase and Nitric Oxide Synthase Role in Diabetic Retinopathy: A Bioinformatics Study. BIOCOMP 2007: 72-75 - Ines Hamdi, Imed Riadh Farah, Mohamed Ben Ahmed:
Analyzing and Dynamic Modeling of Molecular Interactions Networks Based on Multi-agent Systems. BIOCOMP 2007: 76-82 - Nicholas Xue Wei Tan, Felicia Soo Lee Ng, Vivek Tanavde:
Towards a Serum-free Culture Medium: Identifying Human Growth Receptors and Signaling Pathways that Regulate Cell Proliferation in Human Mesenchymal Stem Cells (MSCs). BIOCOMP 2007: 83-90
Phylogenetic Reconstruction and Molecular Evolution
- Christopher M. Frenz:
Interrelationship Between Protein Electrostatics and Evolution in HCV and HIV Replicative Proteins. BIOCOMP 2007: 91-97 - Le Vinh, Andrés Varón, Daniel Janies, Ward C. Wheeler:
Towards Phylogenomic Reconstruction. BIOCOMP 2007: 98-104 - Sunshin Kim, Chungsei Rhee, Jungdo Choi:
A Parallel Algorithm to Cluster Orthologous Protein across Phylogenetic Genomes. BIOCOMP 2007: 105-112
Microarray Data Analysis and Gene Expression
- Jiajun Gu, Jun S. Liu:
Bayesian Biclustering of Microarray Data. BIOCOMP 2007: 113-120 - Marie-Michèle Cordonnier-Pratt, Virgil Johnson, Dmitri Kolychev, Chun Liang, Junfeng Qu, Feng Sun, Zheng Xia, Lee H. Pratt:
MIAME-Compliant Microarray Data Integrated System. BIOCOMP 2007: 121-126 - Liviu Badea:
Combining Gene Expression and Transcription Factor Regulation Data using Simultaneous Nonnegative Matrix Factorization. BIOCOMP 2007: 127-131 - Chen Wang, Jianhua Xuan, Ting Gong, Robert Clarke, Eric P. Hoffman, Yue Joseph Wang:
Stability-Based Dimension Estimation of ICA with Application to Microarray Data Analysis. BIOCOMP 2007: 132-138 - Kumar Abhishek, Harish Karnick:
GO Based Inference of Gene Regulatory Networks from Gene Expression Data. BIOCOMP 2007: 139-145 - Humberto Ortiz-Zuazaga, Sandra Peña de Ortiz, Oscar Moreno de Ayala:
Error Correction and Clustering Gene Expression Data Using Majority Logic Decoding. BIOCOMP 2007: 146-152 - Thomas K. F. Wong, Tak Wah Lam, W. L. Yang, Siu-Ming Yiu:
Finding Alternative Splicing Patterns with Strong Support From Expressed Sequences. BIOCOMP 2007: 153-158 - Huan Wang, Nam-Hai Chua, Xiu-Jie Wang:
Prediction of trans-antisense Transcripts in Arabidopsis thaliana. BIOCOMP 2007: 159-162
Gene Identification and Clustering
- Yijun Sun, Fanhong Yu, Li Liu, William G. Farmerie:
Estimating Microbial Population Densities Based on Genomic Signatures. BIOCOMP 2007: 163-168 - Avinash Kewalramani, Riley Arnaudville, Cliff Han, Olga Chertkov, Thomas S. Brettin:
A novel approach to high throughput microbial genome finishing: Incorporation of 454 sequence data for gap closure in low quality Sanger data. BIOCOMP 2007: 169-174 - Gwo-Liang Chen:
PRAP: An Automated de novo Repeat Finder Pipeline Parkoyotic Genomes. BIOCOMP 2007: 175-180 - Meena K. Sakharkar, Kishore R. Sakharkar:
Targetability and Orthology of Human Disease Genes. BIOCOMP 2007: 181-187 - Waibhav Tembe, Nils Homer, Sotiris Mitropanopoulos, Mitchell Storey, Szabolcs Szelinger, Marcel Brun, Matthew J. Huentelman, Edward Suh, Dietrich A. Stephan, James Lowey, John V. Pearson, David W. Craig:
Analysis Software for High-density Pooled Genotyping Data. BIOCOMP 2007: 188-194 - Cole Harris, Noushin Ghaffari:
Biomarker Discovery Across Annotated and Unannotated Microarray Datasets Using Semi-Supervised Learning. BIOCOMP 2007: 195-200 - Tin-Chun Chu, Lee H. Lee, John J. Gaynor, Quinn C. Vega, Bonnie K. Lustigman, Shankar Srinivasan:
Identification of the Synechococcus sp. IU 625 Metallothionein Gene and its Evolutionary Relationship to the Metallothionein Gene of Other Cyanobacteria. BIOCOMP 2007: 201-207 - Yunkai Liu, Sujuan Ye, Asai Asaithambi:
A Workflow to Discover Regulatory Motifs with Positional Bias in Human Promoters. BIOCOMP 2007: 208-213 - Amitava Karmaker, Stephen Kwek:
An Approach for Analyzing DNA Copy Number Aberrations in Genome Using aCGH Profiles. BIOCOMP 2007: 214-217 - Mary Qu Yang, Laura Elnitski:
Orthology and Multiple Class Prediction of Functional Elements in the Human Genome. BIOCOMP 2007: 218-228
Medical Diagnostic and Software Tools
- Yijun Sun, Steve Goodison:
Predicting Breast Cancer Metastasis by Integrating Both Clinical and Genetic Markers. BIOCOMP 2007: 229-235 - Tian Xue, Boyu Yang, Rebecca Will, Bruce Sharp, Ron Kenyon, Oswald Crasta, Bruno W. S. Sobral:
A Generalized Framework for Pathosystems Informatics & Bioinformatics Web Services. BIOCOMP 2007: 236-242 - Rahul Pandhi, Sumit Khurana, Rajesh Rohilla, Pradeep Khanna:
Intelligent Assistive Feeding Device for Phisically Handicapped. BIOCOMP 2007: 243-247 - Siling Wang, Yuhang Wang, Luc Girard, Young Kim, Jonathan R. Pollack, John D. Minna:
An Interval Tree Based Feature Reduction Method For Cancer Classification Using High-Throughput DNA Copy Number Data. BIOCOMP 2007: 248-255 - Ghasem Zaefarian, Jawed I. A. Siddiqi, Babak Akhgar, Alicja Gruzdz, Aleksandra Ihnatowicz:
Requirements and System Architecture for a Decision Support System for the treatment of Colorectal Cancer. BIOCOMP 2007: 256-262 - Babak Akhgar, Jawed I. A. Siddiqi, Alicja Gruzdz, Aleksandra Ihnatowicz, Ghasem Zaefarian:
An Ontologically Driven Decision Support System for Colorectal Caner Treatment: Data Relevance and Model Integration. BIOCOMP 2007: 263-268 - Alper Kursat Uysal, Ali Gunes, Ahmet Babanli:
Analysis of Headache Disease Data By Neural Networks. BIOCOMP 2007: 269-274 - Jyung Hyun Lee, Yeon Kwan Moon, Sang Hyo Woo, Chang Wook Kim, Hee Joon Park, Jong Sik Jin, Chul-Ho Won, Hyun-Chul Choi, Yoon Nyun Kim, Jin-Ho Cho:
Design & Implementation of CPLD Controller for Bi-directional VGA Capsule Endoscop. BIOCOMP 2007: 275-281 - Jack Y. Yang, Mary Qu Yang:
The 2007 World Congress in Computer Science, Computer Engineering, and Applied Computing Invited Banquet Keynote Lecture: Using Bioinformatics and Machine Learning to Predict Potential Malignancies. BIOCOMP 2007: 282-288
Application of Engineering Techniques and Mathematics in Medicine
- Khalid Sayood, Dhundy Bastola, Peter Iwen, Steven H. Hinrichs:
Use of Average Mutual Information based Species Signature for Fungal and Mycobacterial Differentiation. BIOCOMP 2007: 289-295 - Olga Valenzuela, Fernando Rojas Ruiz, Ignacio Rojas Ruiz, Maria del Mar Cepero, Francisco Javier Rojas:
A Genetic Programming Approach for Classification of the Spontaneous Termination of Atrial Fibrillation. BIOCOMP 2007: 296-300 - Kohei Nakajima, Soya Shinkai:
The Construction of Observational Heterarchy on One-Dimensional Map System. BIOCOMP 2007: 301-308
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