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BIBM 2012: Philadelphia, PA, USA
- 2012 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2012, Philadelphia, PA, USA, October 4-7, 2012. IEEE Computer Society 2012, ISBN 978-1-4673-2559-2
- Sushmita Paul, Pradipta Maji
:
Robust RFCM algorithm for identification of co-expressed miRNAs. 1-4 - Okko Lohmann, Thomas Luhmann, Andreas Hein:
Skeleton Timed Up and Go. 1-5 - Samara C. Silva-Santiago, Elton José R. Vasconcelos, Diana M. Oliveira, Ana Carolina L. Pacheco, Monica F. Silva, Teresa Cristina Lima Rocha, Samyra M. V. Brasil:
The human imprintome vl.O: Over 120 imprinted genes in the human genome impose a major review on previous censuses. 1-5 - Mengjun Wang, Timothy M. Block, Jorge Marrero, Adrian M. Di Bisceglie, Karthik Devarajan, Anand Mehta:
Improved biomarker performance for the detection of hepatocellular carcinoma by inclusion of clinical parameters. 1-5 - Houssam Nassif, Filipe Cunha, Inês C. Moreira
Extracting BI-RADS features from Portuguese clinical texts. 1-4 - Gokul Vasudev, Luis Rueda:
A model to predict and analyze protein-protein interaction types using electrostatic energies. 1-5 - Xia Bi, Hongzhan Huang, Sherri Matis-Mitchell, Peter B. McGarvey, Manabu Torii
Building a classifier for identifying sentences pertaining to disease-drug relationships in tardive dyskinesia. 1-4 - Tzu-Hung Hsiao, Hung-I Harry Chen, Yidong Chen, Yu-Heng Chen, Eric Y. Chuang:
Using gene sets to identify putative drugs for breast cancer. 1-4 - Kathryn Dempsey, Tzu-Yi Chen, Sanjukta Bhowmick, Hesham H. Ali:
On the design of advanced filters for biological networks using graph theoretic properties. 1-5 - Narjes S. Movahedi, Elmirasadat Forouzmand, Hamidreza Chitsaz:
De novo co-assembly of bacterial genomes from multiple single cells. 1-5 - Genevera I. Allen, Zhandong Liu
A Log-Linear Graphical Model for inferring genetic networks from high-throughput sequencing data. 1-6 - Tamara Jiménez, Armin R. Mikler, Marty O'Neill II, Chetan Tiwari:
Maps, rates, and fuzzy mountains: Generating meaningful risk maps. 1-4 - Keith L. Lee, David Stotts:
Composition of bioinformatics model federations using communication aspects. 1-5 - Zeinab Tagliavi, Sorin Draghici
MDAsim: A multiple displacement amplification simulator. 1-4 - Jiashu Zhao, Jimmy Xiangji Huang
A Bayesian-based prediction model for personalized medical health care. 1-4 - Yongguo Mei, Raquel Hontecillas, Xiaoying Zhang, Keith R. Bisset, Stephen G. Eubank
ENISI Visual, an agent-based simulator for modeling gut immunity. 1-5 - James P. Cleveland, John R. Rose:
A neural network approach to the identification of b-/y-ions in MS/MS spectra. 1-5 - M. Fayez Aziz
Stress induces biphasic-rewiring and modularization patterns in the metabolomic networks of Escherichia coli. 1-5 - Ye Chen, Lawrence J. Mazlack, Long J. Lu:
Inferring Fuzzy Cognitive Map models for Gene Regulatory Networks from gene expression data. 1-4 - Li Teng, Kai Tan
Discovering distal regulatory elements by integrating multiple types of chromatin state maps. 1-4 - Ruobing Chen, Katya Scheinberg
Aligning ligand binding cavities by optimizing superposed volume. 1-5 - Jintao Zhang, Jun Huan:
Drug-induced QT prolongation prediction using co-regularized multi-view learning. 1-6 - Qiang Lou, Zoran Obradovic:
Predicting viral infection by selecting informative biomarkers from temporal high-dimensional gene expression data. 1-4 - Pratibha Bhaskaran, Milind V. Kaduskar, Preeti Saluja, Smitha Tallimani, Sandip Bhaumik, Sanghyun Yoo:
ForeTell: Facilitating doctor-patient conversation through interactive information visualization of risk prediction index. 1-4 - Bo Song, Ahmet Sacan:
Automated wound identification system based on image segmentation and Artificial Neural Networks. 1-4 - Kyubum Lee
Drug-drug interaction analysis using heterogeneous biological information network. 1-5 - Mahfuza Sharmin, M. Sohel Rahman
Placement of unique restriction sites in synthetic genomes using multi-objective optimization. 1-4 - Ying Li, Jyothi Venkatiahgari, Liping Jin, Donavan T. Cheng, James Cai:
In Silico Target Portal: An integrated Oncology target discovery web portal. 1-8 - Bob O'Hara:
Title: Approach to information management in an externalized business environment. 1-2 - Zayed Albertyn, Jörg Hakenberg
A high-throughput analysis pipeline for large next generation DNA sequencing studies. 1 - Michael Farnum, Victor S. Lobanov, Michael Brennan, Dimitris K. Agrafiotis
Clinical Case: Enhancing medical monitoring with visualization and analytics. 1 - Jie Cheng:
Discovering breast cancer prognostic biomarkers using a novel feature selection tool. 1 - Xutao Li, Yunming Ye, Qingyao Wu, Michael K. Ng
MultiFacTV: Finding modules from higher-order gene expression profiles with time dimension. 1-6 - Anastasia Christianson:
New approaches for better-informed decisions. 1 - Vinod Kumar:
Systematic drug repositioning: A new paradigm in drug discovery. 1 - Yuedong Song, Jon Crowcroft
Epileptic EEG signal analysis and identification based on nonlinear features. 1-6 - Dan He:
Modeling semantic influence for biomedicai research topics using MeSH hierarchy. 1-6 - Jonathan Woodbridge, Bobak Mortazavi, Majid Sarrafzadeh, Alex A. T. Bui:
A Monte Carlo approach to biomedicai time series search. 1-6 - Hong Cai, Changjin Hong, Jianying Gu, Timothy G. Lilburn, Rui Kuang, Yufeng Wang:
Prediction of novel systems components in cell cycle regulation in malaria parasite by subnetwork alignments. 1-6 - Gang Zhang, Xiangyang Shu, Zhaohui Liang
Multi-instance learning for skin biopsy image features recognition. 1-6 - Zeehasham Rasheed, Huzefa Rangwala, Daniel Barbará:
LSH-Div: Species diversity estimation using locality sensitive hashing. 1-6 - Young-Rae Cho, Tak Chien Chiam, Yanxin Lu:
M-Finder: Functional association mining from protein interaction networks weighted by semantic similarity. 1-6 - Christopher G. Chute:
(1) Obstacles and options for big-data applications in biomedicine: The role of standards and normalizations. 1 - Yuanzhe Bei, Pengyu Hong
Significance analysis by minimizing false discovery rate. 1-6 - Md Mahmudul Hasan, Yusuf Kavurucu, Tamer Kahveci:
SiS: Significant subnetworks in massive number of network topologies. 1-6 - Mohamed F. Ghalwash
Early classification of multivariate time series using a hybrid HMM/SVM model. 1-6 - Brian S. Olson, Amarda Shehu
Efficient basin hopping in the protein energy surface. 1-6 - Elana J. Fertig
Identifying context-specific transcription factor targets from prior knowledge and gene expression data. 1-6 - Ping Zhang
Integration of multiple annotators by aggregating experts and filtering novices. 1-6 - Yu-Fen Huang, Hsiang-Yuan Yeh, Von-Wun Soo:
Network-based inferring drug-disease associations from chemical, genomic and phenotype data. 1-6 - Vladan Radosavljevic, Kosta Ristovski, Zoran Obradovic:
A data mining approach for optimization of acute inflammation therapy. 1-6 - Vance Chiang-Chi Liao, Ming-Syan Chen
An efficient sequential pattern mining algorithm for motifs with gap constraints. 1 - Claus Braun, Markus Daub, Alexander Schöll, Guido Schneider, Hans-Joachim Wunderlich:
Parallel simulation of apoptotic receptor-clustering on GPGPU many-core architectures. 1-6 - Ming Li:
(2) Protein structure determination on demand. 1 - Ngo Phuong Nhung, Tu Minh Phuong:
Using similarity learning to improve network-based gene function prediction. 1-6 - Hang T. T. Phan, Michael J. E. Sternberg
Aligning protein-protein interaction networks using random neural networks. 1-6 - Majid Masso
Prediction of human immunodeficiency virus type 1 drug resistance: Representation of target sequence mutational patterns via an n-grams approach. 1-6 - Colin Kern, Alvaro J. González, Li Liao, K. Vijay-Shanker:
Improving interacting residue prediction using long-distance information in hidden Markov models. 1-6 - Dongqing Zhu, Ben Carterette:
Improving health records search using multiple query expansion collections. 1-7 - Philipp Thomas
Computation of biochemical pathway fluctuations beyond the linear noise approximation using iNA. 1-5 - Sujan Perera, Cory A. Henson, Krishnaprasad Thirunarayan, Amit P. Sheth, Suhas Nair:
Data driven knowledge acquisition method for domain knowledge enrichment in the healthcare. 1-8 - Jun Ren, Jianxin Wang, Min Li:
Identifying protein complexes based on local fitness method. 1-6 - Yifan Peng
iSimp: A sentence simplification system for biomedicail text. 1-6 - Jingyao Li, Dongdong Lin, Hongbao Cao, Yu-Ping Wang:
Classification of multicolor fluorescence in-situ hybridization (M-FISH) image using structure based sparse representation model. 1-6 - Robert F. Murphy:
(3) The CellOrganizer project: An open source system to learn image-derived models of subcellular organization over time and space. 1-2 - Hongbao Cao, Dongdong Lin, Junbo Duan, Yu-Ping Wang, Vince D. Calhoun
Bio marker identification for diagnosis of schizophrenia with integrated analysis of fMRI and SNPs. 1-6 - Evangelia I. Zacharaki
Combining gene expression and function in a spatially localized approach. 1-8 - David P. Gardner, Weijia Xu, Daniel P. Miranker, Stuart Ozer, Jamie J. Cannone, Robin Ray Gutell
An accurate scalable template-based alignment algorithm. 1-7 - Maryam Panahiazar, Ajith Ranabahu, Vahid Taslimi, Hima Yalamanchili, Arlin Stoltzfus
PhylOnt: A domain-specific ontology for phylogeny analysis. 1-6 - Xiaoyun Sun, Pengyu Hong
An advanced method for identifying protein-protein interaction by analyzing TAP/MS data. 1-6 - Jiangwen Sun, Jinbo Bi, Henry R. Kranzler:
A multi-objective program for quantitative subtyping of clinically relevant phenotypes. 1-6 - Nimit Dhulekar, Lauren Bange, Abiurami Baskaran, Daniel Yuan, Basak Oztan, Bülent Yener, Shayoni Ray, Melinda Larsen:
A novel dynamic graph-based computational model for predicting salivary gland branching morphogenesis. 1-8 - Qianqian Wu, Kate Smith-Miles
A two-variable model for stochastic modelling of chemical events with multi-step reactions. 1-6 - En-Shiun Annie Lee, Andrew K. C. Wong:
Identifying protein binding functionality of protein family sequences by Aligned Pattern clusters. 1-6 - Min-Sung Kim, Gwan-Su Yi:
Comprehensive human membrane protein database. 1-6 - Xingpeng Jiang, Xiaohua Hu, Huiyu Shen, Tingting He:
Manifold learning reveals nonlinear structure in metagenomic profiles. 1-6 - Rehman Qureshi, Ahmet Sacan:
A weighted hypergeometric statistic for the enrichment of gene sets. 1-6 - Jie Cheng, Joel Greshock, Leming Shi, Jeffery Painter, Xiwu Lin, Kwan Lee, Shu Zheng, Richard Wooster, Lajos Pusztai, Alan Menius:
An adaptive feature selection method for microarray data analysis. 1-6 - Zifang Huang, Mei-Ling Shyu, James M. Tien, David J. Birnbach, Michael M. Vigoda:
Labor contraction prediction via demographic and obstetrical information analysis. 1-6 - Yifeng Li, Alioune Ngom:
Fast sparse representation approaches for the classification of high-dimensional biological data. 1-6 - Jianqiang Sheng, Songhua Xu, Weicai Deng, Xiaonan Luo:
Novel image features for categorizing biomedical images. 1-6 - Shuo Li, James O. Nyagilo, Digant P. Dave, Jean Gao:
CWT-PLSR for quantitative analysis of Raman spectrum. 1-6 - Perry Evans, Michael Krauthammer
Estimating a gene's mutation burden by the number of observed synonymous base substitutions. 1-6 - Nikolay Balov:
A discrete Bayesian network framework for discrimination of gene expression profiles. 1-7 - Chengwei Lei, Jianhua Ruan
A random walk based approach for improving protein-protein interaction network and protein complex prediction. 1-6 - Hyokyeong Lee, Rahul Singh:
Unsupervised kernel parameter estimation by constrained nonlinear optimization for clustering nonlinear biological data. 1-6 - Weiming Li, Bin Ma, Kaizhong Zhang:
Efficient filtration for similarity search with spaced k-mer neighbors. 1-6 - Nan Du, Jing Gao, Vishrawas Gopalakrishnan, Aidong Zhang:
De-noise biological network from heterogeneous sources via link propagation. 1-6 - Kang Li, Nan Du, Aidong Zhang:
A link prediction based unsupervised rank aggregation algorithm for informative gene selection. 1-6 - Shuguang Wang, Milos Hauskrecht:
Keyword annotation of biomedicai documents with graph-based similarity methods. 1-4 - Ondrej Kuzelka
Extending the ball-histogram method with continuous distributions and an application to prediction of DNA-binding proteins. 1-4 - Ling Zhong, Jason T. L. Wang, Dongrong Wen, Bruce A. Shapiro:
Pre-miRNA classification via combinatorial feature mining and boosting. 1-4 - Hao Jiang, Wai-Ki Ching:
The role of Eigen-matrix translation in classification of biological datasets. 1-4 - Haiying Wang
Drug-target network in myocardial infarction: A structural analysis. 1-4 - Charles Cassio Da Silva, Alcione de Paiva Oliveira
Immune system simulation: Modeling the mast cell. 1-4 - Ioannis Gkigkitzis, Xin-Hua Hu
A model of cellular decision making in photodynamic therapy of cancer. 1-5 - Wen-Jun Shen, Hau-San Wong
OWA-PSSM - A position specific scoring matrix based method integrated with OWA weights for HLA-DR peptide binding prediction. 1-4 - Luis D. Lopez, Jingyi Yu, Catalina O. Tudor, Cecilia N. Arighi, Hongzhan Huang, K. Vijay-Shanker, Cathy H. Wu
Robust segmentation of biomedical figures for image-based document retrieval. 1-6 - Dongfeng Cai, Changlin Ding, Junjun Zuo, Yu Bai:
A semi-supervised learning method for Names of Traditional Chinese Prescriptions and Drugs recognition. 1-4 - David J. Dittman, Taghi M. Khoshgoftaar, Randall Wald, Amri Napolitano:
Similarity analysis of feature ranking techniques on imbalanced DNA microarray datasets. 1-5 - Yuan An, Ritu Khare, Xiaohua Hu, Il-Yeol Song:
Bridging encounter forms and electronic medical record databases: Annotation, mapping, and integration. 1-4 - Shuliang Wang
Automatic analysis method of protein expression images based on generalized data field. 1-4 - Christopher E. Foley, Sana Al Azwari, Mark Dufton, John N. Wilson:
Using microenvironments to identify allosteric binding sites. 1-5 - Yang Pu, Saangho Lee, David C. Samuels, Layne T. Watson, Yang Cao:
The effect of unhealthy β-cells in synchronized insulin secretion. 1-4 - Randall Wald, Taghi M. Khoshgoftaar, Ahmad Abu Shanab:
The effect of measurement approach and noise level on gene selection stability. 1-5 - Xingchi Hu, Yanhong Zhou, Chuang Ma
Recognizing drosha processing sites by a two-step prediction model with structure and sequence information. 1-4 - Shih-Chieh Su, Jyh-Jong Tsay:
Rotation crossover and K-site move mutation for evolutionary protein folding in 3D FCC HP model (preliminary version). 1-4 - Xiwei Tang, Jianxin Wang, Yi Pan
Identifying essential proteins via integration of protein interaction and gene expression data. 1-4 - Xionghui Zhou
Predicting distant metastasis in breast cancer using ensemble classifier based on context-specific miRNA regulation modules. 1-6 - Bingjing Cai, Haiying Wang
Incorporating semantic similarity into clustering process for identifying protein complexes from Affinity Purification/Mass Spectrometry data. 1-4 - Hafeez Ur Rehman, Alfredo Benso
Combining homolog and motif similarity data with Gene Ontology relationships for protein function prediction. 1-4 - Xingpeng Jiang, Jonathan Dushoff, Xin Chen, Xiaohua Hu:
Identifying enterotype in human microbiome by decomposing probabilistic topics into components. 1-4 - Shijiazhu, Yadong Wang:
Modelling non-stationary gene regulatory process with hidden Markov Dynamic Bayesian Network. 1-4 - Jiao Li, Zhiyong Lu:
A new method for computational drug repositioning using drug pairwise similarity. 1-4 - Andrei Todor, Alin Dobra
Uncertain interactions affect degree distribution of biological networks. 1-5 - Bobby McKnight, Ismailcem Budak Arpinar:
Linking and querying genomic datasets using natural language. 1-4 - Irina Hashmi, Amarda Shehu
A basin hopping algorithm for protein-protein docking. 1-4 - Bolin Chen, Jin-Hong Shi, Fang-Xiang Wu
Not AU protein complexes exhibit dense structures in S. cerevisiae PPI network. 1-4 - Ruimin Sun, Xiang Gao
Accurate detection of SNPs using base-specific cleavage and mass spectrometry. 1-4 - Mohammed Al-Shalalfa, Reda Alhajj:
Integrating protein networks for identifying cooperative miRNA activity in disease gene signatures. 1-8 - Mutsumi Fukuzaki, Masa-Aki Yoshida
Systematic measurement of missmatch effect for designing inter-species microarray. 1-4 - Marwan D. Saleh
An automated blood vessel extraction algorithm in fundus images. 1-5 - Iman Rezaeian, Luis Rueda:
Finding genomic features from enriched regions in ChlP-Seq data. 1-4 - Mingyu Shao, Yi Yang, Jihong Guan, Shuigeng Zhou:
A comparison study on protein-protein interaction network models. 1-4 - Krystyna Miliari, Anca I. D. Bucur, Annette ten Teije
Formalization of clinical trial eligibility criteria: Evaluation of a pattern-based approach. 1-4 - Stefano Beretta
Reconstructing isoform graphs from RNA-Seq data. 1-4 - Fedor Bakalov, Marie-Jean Meurs, Birgitta König-Ries, Bahar Sateli, René Witte, Greg Butler, Adrian Tsang:
Personalized semantic assistance for the curation of biochemical literature. 1-4 - Chun-Pei Cheng, Yi-Lin Tsai, Vincent S. Tseng:
CTGR-Span: Efficient mining of cross-timepoint gene regulation sequential patterns from microarray datasets. 1-4 - Daniel Arend
The e!DAL JAVA-API: Store, share and cite primary data in life sciences. 1-5 - Fahad Saeed, Trairak Pisitkun
An efficient algorithm for clustering of large-scale mass spectrometry data. 1-4 - Zhihao Yang, Zhehuan Zhao, Yanpeng Li, Yuncui Hu, Hongfei Lin:
PPIExtractor: A protein-protein interaction Extractor for biomédical literature. 1-6
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