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Martin Maska
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Journal Articles
- 2023
- [j8]Lucia Hradecká
, David Wiesner
Segmentation and Tracking of Mammary Epithelial Organoids in Brightfield Microscopy. IEEE Trans. Medical Imaging 42(1): 281-290 (2023) - 2020
- [j7]Ulysse Rubens
BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows. Patterns 1(3): 100040 (2020) - 2019
- [j6]David Wiesner
CytoPacq: a web-interface for simulating multi-dimensional cell imaging. Bioinform. 35(21): 4531-4533 (2019) - [j5]Carlos Castilla, Martin Maska
3-D Quantification of Filopodia in Motile Cancer Cells. IEEE Trans. Medical Imaging 38(3): 862-872 (2019) - 2018
- [j4]Dmitry V. Sorokin
FiloGen: A Model-Based Generator of Synthetic 3-D Time-Lapse Sequences of Single Motile Cells With Growing and Branching Filopodia. IEEE Trans. Medical Imaging 37(12): 2630-2641 (2018) - 2014
- [j3]Martin Maska
A benchmark for comparison of cell tracking algorithms. Bioinform. 30(11): 1609-1617 (2014) - 2013
- [j2]Martin Maska
Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model. IEEE Trans. Medical Imaging 32(6): 995-1006 (2013) - 2012
- [j1]Ondrej Danek, Pavel Matula, Martin Maska
Smooth Chan-Vese segmentation via graph cuts. Pattern Recognit. Lett. 33(10): 1405-1410 (2012)
Conference and Workshop Papers
- 2019
- [c21]Martin Maska, Tereza Necasová, David Wiesner, Dmitry V. Sorokin, Igor Peterlík, Vladimír Ulman, David Svoboda:
Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy. ICIP 2019: 819-823 - 2018
- [c20]Cem Emre Akbas, Vladimír Ulman, Martin Maska, Florian Jug
Automatic Fusion of Segmentation and Tracking Labels. ECCV Workshops (6) 2018: 446-454 - [c19]Carlos Castilla, Martin Maska
Segmentation of actin-stained 3D fluorescent cells with filopodial protrusions using convolutional neural networks. ISBI 2018: 413-417 - [c18]Igor Peterlík, David Svoboda, Vladimír Ulman, Dmitry V. Sorokin, Martin Maska
Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Multiple Mutually Interacting Motile Cells with Filopodia. SASHIMI@MICCAI 2018: 71-79 - 2017
- [c17]Martin Maska
Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests. ICCV Workshops 2017: 11-17 - [c16]Dmitry V. Sorokin, Igor Peterlík, Vladimír Ulman
Model-based generation of synthetic 3D time-lapse sequences of motile cells with growing filopodia. ISBI 2017: 822-826 - 2016
- [c15]Karel Stepka, Martin Maska, Jakub Jozef Pálenik, Vendula Pospíchalová
Automatic Detection and Segmentation of Exosomes in Transmission Electron Microscopy. ECCV Workshops (1) 2016: 318-325 - 2015
- [c14]María Anguiano, Carlos Castilla, Martin Maska
Characterization of the role of collagen network structure and composition in cancer cell migration. EMBC 2015: 8139-8142 - [c13]Martin Maska
Quantification of the 3D collagen network geometry in confocal reflection microscopy. ICIP 2015: 1791-1794 - 2014
- [c12]David Svoboda, Vladimír Ulman, Ludek Matyska
On proper simulation of phenomena influencing image formation in fluorescence microscopy. ICIP 2014: 3944-3948 - 2013
- [c11]Martin Maska
Automatic quantification of filopodia-based cell migration. ISBI 2013: 668-671 - 2012
- [c10]Martin Maska
Fast tracking of fluorescent cells based on the Chan-Vese model. ISBI 2012: 1316-1319 - 2010
- [c9]Martin Maska
A Fast Level Set-Like Algorithm for Region-Based Active Contours. ISVC (3) 2010: 387-396 - [c8]Ondrej Danek, Martin Maska:
A Simple Topology Preserving Max-Flow Algorithm for Graph Cut Based Image Segmentation. MEMICS 2010: 19-25 - [c7]Martin Maska, Pavel Matula, Michal Kozubek:
Simultaneous Tracking of Multiple Objects Using Fast Level Set-Like Algorithm. MEMICS 2010: 69-76 - 2009
- [c6]Martin Maska
A Fast Level Set-Like Algorithm with Topology Preserving Constraint. CAIP 2009: 930-938 - [c5]Pavel Matula, Martin Maska
Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy. ISBI 2009: 1138-1141 - [c4]Martin Maska, Ondrej Danek, Carlos Ortiz-de-Solorzano
A Two-Phase Segmentation of Cell Nuclei Using Fast Level Set-Like Algorithms. SCIA 2009: 390-399 - [c3]Ondrej Danek, Pavel Matula, Carlos Ortiz-de-Solorzano
Segmentation of Touching Cell Nuclei Using a Two-Stage Graph Cut Model. SCIA 2009: 410-419 - 2007
- [c2]David Svoboda, Marek Kasík, Martin Maska
On Simulating 3D Fluorescent Microscope Images. CAIP 2007: 309-316 - [c1]Martin Maska
A Comparison of Fast Level Set-Like Algorithms for Image Segmentation in Fluorescence Microscopy. ISVC (2) 2007: 571-581
Data and Artifacts
- 2022
- [d1]Carlos Castilla, Martin Maska, Dmitry V. Sorokin, Erik Meijering, Carlos Ortiz-de-Solorzano
Datasets used in "3-D quantification of filopodia in motile cancer cells" IEEE Transactions on Medical Imaging 38(3), 862-872 (2019). IEEE DataPort, 2022
Coauthor Index
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