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Desmond G. Higgins
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2020 – today
- 2020
- [j39]Fabian Sievers, Desmond G. Higgins:
QuanTest2: benchmarking multiple sequence alignments using secondary structure prediction. Bioinform. 36(1): 90-95 (2020)
2010 – 2019
- 2017
- [j38]Quan Le, Fabian Sievers, Desmond G. Higgins:
Protein multiple sequence alignment benchmarking through secondary structure prediction. Bioinform. 33(9): 1331-1337 (2017) - 2016
- [j37]Gearoid Fox, Fabian Sievers, Desmond G. Higgins:
Using de novo protein structure predictions to measure the quality of very large multiple sequence alignments. Bioinform. 32(6): 814-820 (2016) - [j36]Peter Jehl, Jean Manguy
, Denis C. Shields, Desmond G. Higgins, Norman E. Davey
ProViz - a web-based visualization tool to investigate the functional and evolutionary features of protein sequences. Nucleic Acids Res. 44(Webserver-Issue): W11-W15 (2016) - 2015
- [j35]Kieran Boyce
Instability in progressive multiple sequence alignment algorithms. Algorithms Mol. Biol. 10: 26 (2015) - [j34]Peter Jehl, Fabian Sievers, Desmond G. Higgins:
OD-seq: outlier detection in multiple sequence alignments. BMC Bioinform. 16: 269:1-269:11 (2015) - 2014
- [j33]Fabian Sievers, Graham M. Hughes
Systematic exploration of guide-tree topology effects for small protein alignments. BMC Bioinform. 15: 338 (2014) - [j32]Audrey M. Michel
GWIPS-viz: development of a ribo-seq genome browser. Nucleic Acids Res. 42(Database-Issue): 859-864 (2014) - 2013
- [j31]Fabian Sievers, David Dineen, Andreas Wilm
Making automated multiple alignments of very large numbers of protein sequences. Bioinform. 29(8): 989-995 (2013) - 2010
- [j30]Gordon Blackshields, Fabian Sievers, Weifeng Shi, Andreas Wilm
Sequence embedding for fast construction of guide trees for multiple sequence alignment. Algorithms Mol. Biol. 5: 21 (2010) - [j29]Stephen F. Madden
Detecting microRNA activity from gene expression data. BMC Bioinform. 11: 257 (2010)
2000 – 2009
- 2008
- [j28]Gordon Blackshields, Mark A. Larkin, Iain M. Wallace
Fast embedding methods for clustering tens of thousands of sequences. Comput. Biol. Chem. 32(4): 282-286 (2008) - [j27]Simon J. Furney, Stephen F. Madden, Tomasz A. Kisiel, Desmond G. Higgins, Núria López-Bigas:
Distinct Patterns in the Regulation and Evolution of Human Cancer Genes. Silico Biol. 8(1): 33-46 (2008) - [j26]Sébastien Moretti
R-Coffee: a web server for accurately aligning noncoding RNA sequences. Nucleic Acids Res. 36(Web-Server-Issue): 10-13 (2008) - 2007
- [j25]Ian B. Jeffery
Integrating transcription factor binding site information with gene expression datasets. Bioinform. 23(3): 298-305 (2007) - [j24]Mark A. Larkin, Gordon Blackshields, Nigel P. Brown
Clustal W and Clustal X version 2.0. Bioinform. 23(21): 2947-2948 (2007) - [j23]Iain M. Wallace
Supervised multivariate analysis of sequence groups to identify specificity determining residues. BMC Bioinform. 8 (2007) - [j22]Sébastien Moretti
The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. Nucleic Acids Res. 35(Web-Server-Issue): 645-648 (2007) - 2006
- [j21]Fabrice Armougom, Olivier Poirot
APDB: a web server to evaluate the accuracy of sequence alignments using structural information. Bioinform. 22(19): 2439-2440 (2006) - [j20]Ian B. Jeffery
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data. BMC Bioinform. 7: 359 (2006) - [j19]Gordon Blackshields, Iain M. Wallace, Mark A. Larkin, Desmond G. Higgins:
Analysis and Comparison of Benchmarks for Multiple Sequence Alignment. Silico Biol. 6(4): 321-339 (2006) - 2005
- [j18]Iain M. Wallace
Evaluation of iterative alignment algorithms for multiple alignment. Bioinform. 21(8): 1408-1414 (2005) - [j17]Aedín C. Culhane
MADE4: an R package for multivariate analysis of gene expression data. Bioinform. 21(11): 2789-2790 (2005) - 2003
- [j16]Aedín C. Culhane
Cross-platform comparison and visualisation of gene expression data using co-inertia analysis. BMC Bioinform. 4: 59 (2003) - [j15]Chenna Ramu, Hideaki Sugawara, Tadashi Koike, Rodrigo Lopez
Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 31(13): 3497-3500 (2003) - [c2]Steven D. Prestwich, Desmond G. Higgins, Orla O'Sullivan
A SAT-Based Approach to Multiple Sequence Alignment. CP 2003: 940-944 - [c1]Orla O'Sullivan, Mark Zehnder, Desmond G. Higgins, Philipp Bucher, Aurélien Grosdidier, Cédric Notredame:
APDB: a novel measure for benchmarking sequence alignment methods without reference alignments. ISMB (Supplement of Bioinformatics) 2003: 215-221 - 2002
- [j14]Aedín C. Culhane
Between-group analysis of microarray data. Bioinform. 18(12): 1600-1608 (2002)
1990 – 1999
- 1999
- [j13]Patricia Thébault
MIAH: automatic alignment of eukaryotic SSU rRNAs. Bioinform. 15(4): 341-342 (1999) - 1998
- [j12]Emmet A. O'Brien, Cédric Notredame, Desmond G. Higgins:
Optimization of ribosomal RNA profile alignments. Bioinform. 14(4): 332-341 (1998) - [j11]Cédric Notredame, Liisa Holm, Desmond G. Higgins:
COFFEE: an objective function for multiple sequence alignments. Bioinform. 14(5): 407-422 (1998) - [j10]Emmet A. O'Brien, Desmond G. Higgins:
Empirical estimation of the reliability of ribosomal RNA alignments. Bioinform. 14(10): 830-838 (1998) - 1994
- [j9]Julie Dawn Thompson, Desmond G. Higgins, Toby J. Gibson
Improved sensitivity of profile searches through the use of sequence weights and gap excision. Comput. Appl. Biosci. 10(1): 19-29 (1994) - 1993
- [j8]Catherine M. Rice, Rainer Fuchs, Desmond G. Higgins, Peter Stoehr
The EMBL data library. Nucleic Acids Res. 21(13): 2967-2971 (1993) - 1992
- [j7]Desmond G. Higgins:
Sequence ordinations: a multivariate analysis approach to analysing large sequence data sets. Comput. Appl. Biosci. 8(1): 15-22 (1992) - [j6]Desmond G. Higgins, Peter Stoehr:
EMBLSCAN: fast approximate DNA database searches on compact disc. Comput. Appl. Biosci. 8(2): 137-139 (1992) - [j5]Desmond G. Higgins, Alan J. Bleasby, Rainer Fuchs:
CLUSTAL V: improved software for multiple sequence alignment. Comput. Appl. Biosci. 8(2): 189-191 (1992) - [j4]Denis C. Shields, Desmond G. Higgins, P. M. Sharp:
GCWIND: a microcomputer program for identifying open reading frames according to codon positional G+C content. Comput. Appl. Biosci. 8(5): 521-523 (1992) - [j3]Jaap Heringa, Hubert Sommerfeldt, Desmond G. Higgins, Patrick Argos:
OBSTRUCT: a program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarity. Comput. Appl. Biosci. 8(6): 599-600 (1992)
1980 – 1989
- 1989
- [j2]Desmond G. Higgins, P. M. Sharp:
Fast and sensitive multiple sequence alignments on a microcomputer. Comput. Appl. Biosci. 5(2): 151-153 (1989) - 1987
- [j1]Desmond G. Higgins, Manolo Gouy:
Interfacing similarity search software with the sequence retrieval system ACNUC. Comput. Appl. Biosci. 3(3): 239-241 (1987)
Coauthor Index
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