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Darren R. Flower
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2020 – today
- 2023
- [j41]Subhagata Chattopadhyay, Nhat Phuong Do, Darren R. Flower, Amit K. Chattopadhyay:
Extracting prime protein targets as possible drug candidates: machine learning evaluation. Medical Biol. Eng. Comput. 61(11): 3035-3048 (2023) - 2020
- [j40]Monica J. Quinzo, Esther M. Lafuente, Pilar Zuluaga, Darren R. Flower, Pedro A. Reche:
Correction to: Computational assembly of a human Cytomegalovirus vaccine upon experimental epitope legacy. BMC Bioinform. 21(1): 116 (2020)
2010 – 2019
- 2019
- [j39]Monica J. Quinzo, Esther M. Lafuente, Pilar Zuluaga, Darren R. Flower, Pedro A. Reche:
Computational assembly of a human Cytomegalovirus vaccine upon experimental epitope legacy. BMC Bioinform. 20-S(6): 476 (2019) - 2018
- [c4]Monica J. Quinzo, Esther M. Lafuente, Pedro A. Reche, Darren R. Flower:
Computational design of a legacy-based epitope vaccine against Human Cytomegalovirus. BIBM 2018: 1411-1417 - 2016
- [j38]Enrique Audain, Yassel Ramos, Henning Hermjakob, Darren R. Flower, Yasset Pérez-Riverol:
Accurate estimation of isoelectric point of protein and peptide based on amino acid sequences. Bioinform. 32(6): 821-827 (2016) - [j37]Qamar M. Sheikh, Derek Gatherer, Pedro A. Reche, Darren R. Flower:
Towards the knowledge-based design of universal influenza epitope ensemble vaccines. Bioinform. 32(21): 3233-3239 (2016) - 2015
- [j36]Egle Bunkute, Christopher Cummins, Fraser J. Crofts, Gareth Bunce, Ian T. Nabney, Darren R. Flower:
PIP-DB: the Protein Isoelectric Point database. Bioinform. 31(2): 295-296 (2015) - [j35]Amit K. Chattopadhyay, Diar Nasiev, Darren R. Flower:
A statistical physics perspective on alignment-independent protein sequence comparison. Bioinform. 31(15): 2469-2474 (2015) - 2014
- [c3]Shahzad Mumtaz, Darren R. Flower, Ian T. Nabney:
Multi-level Visualisation using Gaussian Process Latent Variable Models. IVAPP 2014: 122-129 - 2013
- [j34]Ivan Dimitrov, Darren R. Flower, Irini A. Doytchinova:
AllerTOP - a server for in silico prediction of allergens. BMC Bioinform. 14(S-6): S4 (2013) - 2012
- [c2]Shahzad Mumtaz, Ian T. Nabney, Darren R. Flower:
Novel visualization methods for protein data. CIBCB 2012: 198-205 - 2010
- [j33]Ivan Dimitrov, Panayot Garnev, Darren R. Flower, Irini A. Doytchinova:
EpiTOP - a proteochemometric tool for MHC class II binding prediction. Bioinform. 26(16): 2066-2068 (2010) - [j32]Andrew Secker, Matthew N. Davies, Alex Alves Freitas, Edward Clark, Jonathan Timmis, Darren R. Flower:
Hierarchical classification of G-Protein-Coupled Receptors with data-driven selection of attributes and classifiers. Int. J. Data Min. Bioinform. 4(2): 191-210 (2010) - [j31]Hifzur Rahman Ansari, Darren R. Flower, G. P. S. Raghava:
AntigenDB: an immunoinformatics database of pathogen antigens. Nucleic Acids Res. 38(Database-Issue): 847-853 (2010)
2000 – 2009
- 2009
- [j30]Andrew Secker, Matthew N. Davies, Alex Alves Freitas, Jonathan Timmis, Edward Clark, Darren R. Flower:
An Artificial Immune System for Clustering Amino Acids in the Context of Protein Function Classification. J. Math. Model. Algorithms 8(2): 103-123 (2009) - 2008
- [j29]Matthew N. Davies, Andrew Secker, Alex Alves Freitas, Edward Clark, Jonathan Timmis, Darren R. Flower:
Optimizing amino acid groupings for GPCR classification. Bioinform. 24(18): 1980-1986 (2008) - [c1]Andrew Secker, Matthew N. Davies, Alex Alves Freitas, Jonathan Timmis, Edward Clark, Darren R. Flower:
An Artificial Immune System for Evolving Amino Acid Clusters Tailored to Protein Function Prediction. ICARIS 2008: 242-253 - 2007
- [j28]Matthew N. Davies, Andrew Secker, Alex Alves Freitas, Miguel Mendao, Jonathan Timmis, Darren R. Flower:
On the hierarchical classification of G protein-coupled receptors. Bioinform. 23(23): 3113-3118 (2007) - [j27]Irini A. Doytchinova, Darren R. Flower:
VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines. BMC Bioinform. 8 (2007) - [j26]Irini A. Doytchinova, Darren R. Flower:
Predicting Class I Major Histocompatibility Complex (MHC) Binders Using Multivariate Statistics: Comparison of Discriminant Analysis and Multiple Linear Regression. J. Chem. Inf. Model. 47(1): 234-238 (2007) - 2006
- [j25]Irini A. Doytchinova, Pingping Guan, Darren R. Flower:
EpiJen: a server for multistep T cell epitope prediction. BMC Bioinform. 7: 131 (2006) - [j24]Wen Liu, Xiangshan Meng, Qiqi Xu, Darren R. Flower, Tongbin Li:
Quantitative prediction of mouse class I MHC peptide binding affinity using support vector machine regression (SVR) models. BMC Bioinform. 7: 182 (2006) - [j23]Ji Wan, Wen Liu, Qiqi Xu, Yongliang Ren, Darren R. Flower, Tongbin Li:
SVRMHC prediction server for MHC-binding peptides. BMC Bioinform. 7: 463 (2006) - [j22]Jesper Salomon, Darren R. Flower:
Predicting Class II MHC-Peptide binding: a kernel based approach using similarity scores. BMC Bioinform. 7: 501 (2006) - [j21]Channa K. Hattotuwagama, Christopher P. Toseland, Pingping Guan, Debra J. Taylor, Shelley L. Hemsley, Irini A. Doytchinova, Darren R. Flower:
Toward Prediction of Class II Mouse Major Histocompatibility Complex Peptide Binding Affinity: in Silico Bioinformatic Evaluation Using Partial Least Squares, a Robust Multivariate Statistical Technique. J. Chem. Inf. Model. 46(3): 1491-1502 (2006) - [j20]Christopher P. Toseland, Helen M. McSparron, Matthew N. Davies, Darren R. Flower:
PPD v1.0 - an integrated, web-accessible database of experimentally determined protein pKa values. Nucleic Acids Res. 34(Database-Issue): 199-203 (2006) - 2005
- [j19]Christopher P. Toseland, Helen M. McSparron, Darren R. Flower:
DSD - An integrated, web-accessible database of Dehydrogenase Enzyme Stereospecificities. BMC Bioinform. 6: 283 (2005) - [j18]Irini A. Doytchinova, Valerie Walshe, Persephone Borrow, Darren R. Flower:
Towards the chemometric dissection of peptide - HLA-A*0201 binding affinity: comparison of local and global QSAR models. J. Comput. Aided Mol. Des. 19(3): 203-212 (2005) - [j17]Channa K. Hattotuwagama, Irini A. Doytchinova, Darren R. Flower:
In Silico Prediction of Peptide Binding Affinity to Class I Mouse Major Histocompatibility Complexes: A Comparative Molecular Similarity Index Analysis (CoMSIA) Study. J. Chem. Inf. Model. 45(5): 1415-1423 (2005) - 2004
- [j16]Shunzhou Wan, Peter V. Coveney, Darren R. Flower:
Large-scale molecular dynamics simulations of HLA-A*0201 complexed with a tumor-specific antigenic peptide: Can the α3 and β2m domains be neglected? J. Comput. Chem. 25(15): 1803-1813 (2004) - 2003
- [j15]Irini A. Doytchinova, Darren R. Flower:
Towards the in silico identification of class II restricted T-cell epitopes: a partial least squares iterative self-consistent algorithm for affinity prediction. Bioinform. 19(17): 2263-2270 (2003) - [j14]Helen M. McSparron, Martin J. Blythe, Christianna Zygouri, Irini A. Doytchinova, Darren R. Flower:
JenPep: A Novel Computational Information Resource for Immunobiology and Vaccinology. J. Chem. Inf. Comput. Sci. 43(4): 1276-1287 (2003) - [j13]Terri K. Attwood, Paul Bradley, Darren R. Flower, Anna Gaulton, Neil Maudling, Alex L. Mitchell, G. Moulton, A. Nordle, K. Paine, P. Taylor, A. Uddin, Christianna Zygouri:
PRINTS and its automatic supplement, prePRINTS. Nucleic Acids Res. 31(1): 400-402 (2003) - [j12]Pingping Guan, Irini A. Doytchinova, Christianna Zygouri, Darren R. Flower:
MHCPred: a server for quantitative prediction of peptide-MHC binding. Nucleic Acids Res. 31(13): 3621-3624 (2003) - [j11]Paul D. Taylor, Terri K. Attwood, Darren R. Flower:
BPROMPT: a consensus server for membrane protein prediction. Nucleic Acids Res. 31(13): 3698-3700 (2003) - 2002
- [j10]Martin J. Blythe, Irini A. Doytchinova, Darren R. Flower:
JenPep: a database of quantitative functional peptide data for immunology. Bioinform. 18(3): 434-439 (2002) - [j9]Irini A. Doytchinova, Darren R. Flower:
A Comparative Molecular Similarity Index Analysis (CoMSIA) study identifies an HLA-A2 binding supermotif. J. Comput. Aided Mol. Des. 16(8-9): 535-544 (2002) - [j8]Christian Schönbach, Judice L. Y. Koh, Darren R. Flower, Limsoon Wong, Vladimir Brusic:
FIMM, a database of functional molecular immunology: update 2002. Nucleic Acids Res. 30(1): 226-229 (2002) - [j7]Terri K. Attwood, Martin J. Blythe, Darren R. Flower, Anna Gaulton, J. E. Mabey, Neil Maudling, L. McGregor, Alex L. Mitchell, G. Moulton, K. Paine, Philip Scordis:
PRINTS and PRINTS-S shed light on protein ancestry. Nucleic Acids Res. 30(1): 239-241 (2002) - 2000
- [j6]Terri K. Attwood, Michael D. R. Croning, Darren R. Flower, A. P. Lewis, J. E. Mabey, Philip Scordis, J. N. Selley, W. Wright:
PRINTS-S: the database formerly known as PRINTS. Nucleic Acids Res. 28(1): 225-227 (2000)
1990 – 1999
- 1999
- [j5]Philip Scordis, Darren R. Flower, Terri K. Attwood:
FingerPRINTScan: intelligent searching of the PRINTS motif database. Bioinform. 15(10): 799-806 (1999) - [j4]Terri K. Attwood, Darren R. Flower, A. P. Lewis, J. E. Mabey, S. R. Morgan, Philip Scordis, J. N. Selley, W. Wright:
PRINTS prepares for the new millennium. Nucleic Acids Res. 27(1): 220-225 (1999) - 1998
- [j3]Darren R. Flower:
On the Properties of Bit String-Based Measures of Chemical Similarity. J. Chem. Inf. Comput. Sci. 38(3): 379-386 (1998) - [j2]Terri K. Attwood, Michael E. Beck, Darren R. Flower, Philip Scordis, J. N. Selley:
The PRINTS protein fingerprint database in its fifth year. Nucleic Acids Res. 26(1): 304-308 (1998) - 1997
- [j1]Terri K. Attwood, H. Avison, Michael E. Beck, Maria C. Bewley, Alan J. Bleasby, F. Brewster, P. Cooper, Kirill Degtyarenko, A. J. Geddes, Darren R. Flower, M. P. Kelly, Shaun Lott, K. M. Measures, David J. Parry-Smith, D. N. Perkins, Philip Scordis, David Scott, C. Worledge:
The PRINTS Database of Protein Fingerprints: A Novel Information Resource for Computational Molecular Biology. J. Chem. Inf. Comput. Sci. 37(3): 417-424 (1997)
Coauthor Index
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