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Jason L. Stein

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2020 – today

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2023
[j10]
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Hervé Lemaître, Yann Le Guen, Amanda K. Tilot, Jason L. Stein, Cathy Philippe, Jean-François Mangin, Simon E. Fisher, Vincent Frouin:
Genetic variations within human gained enhancer elements affect human brain sulcal morphology. NeuroImage 265: 119773 (2023)
[c11]
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Ziquan Wei, Tingting Dan, Jiaqi Ding, Carolyn M. McCormick, Felix A. Kyere, Minjeong Kim, David Borland, Jason L. Stein, Guorong Wu:
High Throughput Deep Model of 3D Nucleus Instance Segmentation by Stereo Stitching Contextual Gaps. ISBI 2023: 1-5
2022
[j9]
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Yue Guo, Oleh Krupa, Jason L. Stein, Guorong Wu, Ashok Kumar Krishnamurthy:
SAU-Net: A Unified Network for Cell Counting in 2D and 3D Microscopy Images. IEEE ACM Trans. Comput. Biol. Bioinform. 19(4): 1920-1932 (2022)
[c10]
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Yue Guo, David Borland, Carolyn M. McCormick, Jason L. Stein, Guorong Wu, Ashok Kumar Krishnamurthy:
Cell Counting with Inverse Distance Kernel and Self-supervised Learning. MOVI@MICCAI 2022: 1-10
2021
[j8]
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  - journals/bmcbi/BorlandMPKMBFEO21
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David Borland, Carolyn M. McCormick, Niyanta K. Patel, Oleh Krupa, Jessica T. Mory, Alvaro A. Beltran, Tala M. Farah, Carla F. Escobar-Tomlienovich, Sydney S. Olson, Minjeong Kim, Guorong Wu, Jason L. Stein:
Segmentor: a tool for manual refinement of 3D microscopy annotations. BMC Bioinform. 22(1): 260 (2021)
[c9]
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Junbo Ma, Oleh Krupa, Madison Rose Glass, Carolyn M. McCormick, David Borland, Minjeong Kim, Jason L. Stein, Guorong Wu:
3D Nucleus Instance Segmentation for Whole-Brain Microscopy Images. IPMI 2021: 504-516

2010 – 2019

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2019
[c8]
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Yue Guo, Jason L. Stein, Guorong Wu, Ashok K. Krishnamurthy:
SAU-Net: A Universal Deep Network for Cell Counting. BCB 2019: 299-306
[c7]
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Yue Guo, Qian Wang, Oleh Krupa, Jason L. Stein, Guorong Wu, Kira Bradford, Ashok K. Krishnamurthy:
Cross Modality Microscopy Segmentation via Adversarial Adaptation. IWBBIO (2) 2019: 469-478
2017
[c6]
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Qian Wang, Shaoyu Wang, Xiaofeng Zhu, Tianyi Liu, Zachary Humphrey, Vladimir Ghukasyan, Mike Conway, Erik Scott, Giulia Fragola, Kira Bradford, Mark J. Zylka, Ashok K. Krishnamurthy, Jason L. Stein, Guorong Wu:
Accurate and High Throughput Cell Segmentation Method for Mouse Brain Nuclei Using Cascaded Convolutional Neural Network. Patch-MI@MICCAI 2017: 55-62
2013
[c5]
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  - conf/miccai/HibarSJKTMZMMWWT13
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Derrek P. Hibar, Jason L. Stein, Neda Jahanshad, Omid Kohannim, Arthur W. Toga, Katie McMahon, Greig I. de Zubicaray, Grant W. Montgomery, Nicholas G. Martin, Margaret J. Wright, Michael W. Weiner, Paul M. Thompson:
Exhaustive Search of the SNP-SNP Interactome Identifies Epistatic Effects on Brain Volume in Two Cohorts. MICCAI (3) 2013: 600-607
[c4]
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Derrek P. Hibar, Sarah E. Medland, Jason L. Stein, Sungeun Kim, Li Shen, Andrew J. Saykin, Greig I. de Zubicaray, Katie McMahon, Grant W. Montgomery, Nicholas G. Martin, Margaret J. Wright, Srdjan Djurovic, Ingrid Agartz, Ole A. Andreassen, Paul M. Thompson:
Genetic Clustering on the Hippocampal Surface for Genome-Wide Association Studies. MICCAI (2) 2013: 690-697
2012
[j7]
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  - journals/neuroimage/VounouJWSTRM12
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Maria Vounou, Eva Janousová, Robin Wolz, Jason L. Stein, Paul M. Thompson, Daniel Rueckert, Giovanni Montana:
Sparse reduced-rank regression detects genetic associations with voxel-wise longitudinal phenotypes in Alzheimer's disease. NeuroImage 60(1): 700-716 (2012)
[j6]
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Evan Lutkenhoff, Katherine H. Karlsgodt, Boris Gutman, Jason L. Stein, Paul M. Thompson, Tyrone D. Cannon, J. David Jentsch:
Structural and functional neuroimaging phenotypes in dysbindin mutant mice. NeuroImage 62(1): 120-129 (2012)
[c3]
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Omid Kohannim, Derrek P. Hibar, Neda Jahanshad, Jason L. Stein, Xue Hua, Arthur W. Toga, Clifford R. Jack, Michael W. Weiner, Paul M. Thompson:
Predicting temporal lobe volume on MRI from genotypes using L¹-L² regularized regression. ISBI 2012: 1160-1163
2011
[j5]
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Derrek P. Hibar, Jason L. Stein, Omid Kohannim, Neda Jahanshad, Andrew J. Saykin, Li Shen, Sungeun Kim, Nathan Pankratz, Tatiana Foroud, Matthew J. Huentelman, Steven G. Potkin, Clifford R. Jack Jr., Michael W. Weiner, Arthur W. Toga, Paul M. Thompson:
Voxelwise gene-wide association study (vGeneWAS): Multivariate gene-based association testing in 731 elderly subjects. NeuroImage 56(4): 1875-1891 (2011)
[c2]
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Derrek P. Hibar, Jason L. Stein, Omid Kohannim, Neda Jahanshad, Clifford R. Jack, Michael Weiner, Arthur W. Toga, Paul M. Thompson:
Principal components regression: Multivariate, gene-based tests in imaging genomics. ISBI 2011: 289-293
[c1]
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Omid Kohannim, Derrek P. Hibar, Jason L. Stein, Neda Jahanshad, Clifford R. Jack, Michael Weiner, Arthur W. Toga, Paul M. Thompson:
Boosting power to detect genetic associations in imaging using multi-locus, genome-wide scans and ridge regression. ISBI 2011: 1855-1859
2010
[j4]
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  - journals/neuroimage/SteinHMLHHLTSKESSFPHCGACSWDPJWT10
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Jason L. Stein, Xue Hua, Jonathan H. Morra, Suh Lee, Derrek P. Hibar, April J. Ho, Alex D. Leow, Arthur W. Toga, Jae Hoon Sul, Hyun Min Kang, Eleazar Eskin, Andrew J. Saykin, Li Shen, Tatiana Foroud, Nathan Pankratz, Matthew J. Huentelman, David W. Craig, Jill D. Gerber, April N. Allen, Jason J. Corneveaux, Dietrich A. Stephan, Jennifer Webster, Bryan M. DeChairo, Steven G. Potkin, Clifford R. Jack Jr., Michael W. Weiner, Paul M. Thompson:
Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease. NeuroImage 51(2): 542-554 (2010)
[j3]
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Jason L. Stein, Xue Hua, Suh Lee, April J. Ho, Alex D. Leow, Arthur W. Toga, Andrew J. Saykin, Li Shen, Tatiana Foroud, Nathan Pankratz, Matthew J. Huentelman, David W. Craig, Jill D. Gerber, April N. Allen, Jason J. Corneveaux, Bryan M. DeChairo, Steven G. Potkin, Michael W. Weiner, Paul M. Thompson, Alzheimer's Disease Neuroimaging Initiative:
Voxelwise genome-wide association study (vGWAS). NeuroImage 53(3): 1160-1174 (2010)

2000 – 2009

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2008
[j2]
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Jason L. Stein, Lisa M. Wiedholz, Danielle S. Bassett, Daniel R. Weinberger, Caroline F. Zink, Venkata S. Mattay, Andreas Meyer-Lindenberg:
Corrigendum to "A validated network of effective amygdala connectivity" [NeuroImage 36 (2007) 736-745]. NeuroImage 39(1): 548 (2008)
2007
[j1]
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Jason L. Stein, Lisa M. Wiedholz, Danielle S. Bassett, Daniel R. Weinberger, Caroline F. Zink, Venkata S. Mattay, Andreas Meyer-Lindenberg:
A validated network of effective amygdala connectivity. NeuroImage 36(3): 736-745 (2007)

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