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Thomas K. F. Wong
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Journal Articles
- 2024
- [j15]Teng Li, Yiran Zou, Xianghan Li, Thomas K. F. Wong, Allen G. Rodrigo:
Mugen-UMAP: UMAP visualization and clustering of mutated genes in single-cell DNA sequencing data. BMC Bioinform. 25(1): 308 (2024) - 2021
- [j14]Thomas K. F. Wong, Teng Li, Louis Ranjard
, Steven H. Wu
An assembly-free method of phylogeny reconstruction using short-read sequences from pooled samples without barcodes. PLoS Comput. Biol. 17(9) (2021) - 2020
- [j13]Louis Ranjard, Thomas K. F. Wong, Allen G. Rodrigo:
Correction to: Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage. BMC Bioinform. 21(1): 24 (2020) - 2019
- [j12]Louis Ranjard
Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage. BMC Bioinform. 20(1): 654 (2019) - 2018
- [j11]Thomas K. F. Wong
HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations. BMC Bioinform. 19(1): 389:1-389:11 (2018) - 2014
- [j10]Xihao Hu, Thomas K. F. Wong, Zhi John Lu, Ting-Fung Chan
Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data. Bioinform. 30(8): 1049-1055 (2014) - 2012
- [j9]Chi-Man Liu, Thomas K. F. Wong, Edward Wu, Ruibang Luo
SOAP3: ultra-fast GPU-based parallel alignment tool for short reads. Bioinform. 28(6): 878-879 (2012) - [j8]Thomas K. F. Wong, Siu-Ming Yiu:
Structural Alignment of RNA with Triple Helix Structure. J. Comput. Biol. 19(4): 365-378 (2012) - [j7]Thomas K. F. Wong, Y. S. Chiu, Tak Wah Lam
Memory Efficient Algorithms for Structural Alignment of RNAs with Pseudoknots. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 161-168 (2012) - [j6]Christopher Ma, Thomas K. F. Wong, Tak Wah Lam
An Efficient Alignment Algorithm for Searching Simple Pseudoknots over Long Genomic Sequence. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1629-1638 (2012) - 2011
- [j5]Thomas K. F. Wong, Kwok-Lung Wan
RNASAlign: RNA Structural Alignment System. Bioinform. 27(15): 2151-2152 (2011) - [j4]Thomas K. F. Wong, Tak Wah Lam
Structural Alignment of RNA with Complex Pseudoknot Structure. J. Comput. Biol. 18(1): 97-108 (2011) - 2010
- [j3]Thomas K. F. Wong, Tak Wah Lam
Improving the accuracy of signal transduction pathway construction using level-2 neighbours. Int. J. Bioinform. Res. Appl. 6(6): 542-555 (2010) - 2009
- [j2]Thomas K. F. Wong, Tak Wah Lam
Correcting short reads with high error rates for improved sequencing result. Int. J. Bioinform. Res. Appl. 5(2): 224-237 (2009) - 2008
- [j1]Thomas K. F. Wong, Tak Wah Lam
Finding Alternative Splicing Patterns with Strong Support from expressed Sequences on Individual exons/introns. J. Bioinform. Comput. Biol. 6(5): 1021-1033 (2008)
Conference and Workshop Papers
- 2013
- [c13]Shirley W. I. Siu, Thomas K. F. Wong, Simon Fong:
Comparison of Cutoff Strategies for Geometrical Features in Machine Learning-Based Scoring Functions. ADMA (2) 2013: 336-347 - [c12]Bay-Yuan Hsu, Thomas K. F. Wong, Wing-Kai Hon, Xinyi Liu, Tak Wah Lam, Siu-Ming Yiu:
A Local Structural Prediction Algorithm for RNA Triple Helix Structure. PRIB 2013: 102-113 - 2012
- [c11]Ruibang Luo
Efficient SNP-sensitive alignment and database-assisted SNP calling for low coverage samples. BCB 2012: 163-169 - 2011
- [c10]Xuan Liu, Shing-Wan Choi
Detection of novel tandem duplication with next-generation sequencing. BCB 2011: 415-419 - [c9]Thomas K. F. Wong, Hui-Ting Yu, Bay-Yuan Hsu, Tak Wah Lam
Algorithms for pseudoknot classification. BCB 2011: 484-486 - 2010
- [c8]Yizhen Jia, Thomas K. F. Wong, You-Qiang Song, David K. Smith, Siu-Ming Yiu:
Investigation of the Lineage and Tissue Specificity of Genes. BIOCOMP 2010: 306-310 - [c7]Thomas K. F. Wong, Siu-Ming Yiu:
Structure Prediction of Simple Non-standard Pseudoknot. BIOINFORMATICS 2010: 33-38 - [c6]Thomas K. F. Wong, Siu-Ming Yiu:
Prediction of Minimum Free Energy Structure for Simple Non-standard Pseudoknot. BIOSTEC (Selected Papers) 2010: 345-355 - [c5]Thomas K. F. Wong, Brenda W. Y. Cheung, Tak Wah Lam
Local Structural Alignment of RNA with Affine Gap Model. ISBRA 2010: 191-202 - 2009
- [c4]Thomas K. F. Wong, Siu-Ming Yiu, Tak Wah Lam, Wing-Kin Sung
The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning. BICoB 2009: 79-89 - [c3]Thomas K. F. Wong, Tak Wah Lam
Structural Alignment of RNA with Complex Pseudoknot Structure. WABI 2009: 403-414 - 2008
- [c2]Thomas K. F. Wong, Y. S. Chiu, Tak Wah Lam, Siu-Ming Yiu:
A Memory Efficient Algorithm for Structural Alignment of RNAs with Embedded Simple Pseudoknots. APBC 2008: 89-100 - 2007
- [c1]Thomas K. F. Wong, Tak Wah Lam, W. L. Yang, Siu-Ming Yiu:
Finding Alternative Splicing Patterns with Strong Support From Expressed Sequences. BIOCOMP 2007: 153-158
Parts in Books or Collections
- 2011
- [p1]Thomas K. F. Wong, Siu-Ming Yiu:
Structural Alignment of RNAs with Pseudoknots. Handbook of Research on Computational and Systems Biology 2011: 550-571
Coauthor Index
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