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Jill L. Wegrzyn

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2020 – today

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2021
[j12]
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  - journals/bib/StatonCSWABCFGG21
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Margaret Staton, Ethalinda Cannon, Lacey-Anne Sanderson, Jill L. Wegrzyn, Tavis K. Anderson, Sean Buehler, Irene Cobo-Simón, Kay Faaberg, Emily S. Grau, Valentin Guignon, Jessica Gunoskey, Blake Inderski, Sook Jung, Kelly Lager, Dorrie Main, Monica Poelchau, Risharde Ramnath, Peter Richter, Joe West, Stephen P. Ficklin:
Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases. Briefings Bioinform. 22(6) (2021)
2020
[j11]
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  - journals/biodb/SpoorWSCACHHJSW20
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Shawna Spoor, Connor Wytko, Brian Soto, Ming Chen, Abdullah Almsaeed, Bradford Condon, Nic Herndon, Heidi Hough, Sook Jung, Meg Staton, Jill L. Wegrzyn, Dorrie Main, F. Alex Feltus, Stephen P. Ficklin:
Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases. Database J. Biol. Databases Curation 2020 (2020)

2010 – 2019

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2019
[j10]
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  - journals/biodb/FalkHGBRZBRFSFJ19
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Taylor Falk, Nic Herndon, Emily S. Grau, Sean Buehler, Peter Richter, Sumaira Zaman, Eliza M. Baker, Risharde Ramnath, Stephen P. Ficklin, Margaret Staton, Frank Alex Feltus, Sook Jung, Doreen Main, Jill L. Wegrzyn:
Growing and cultivating the forest genomics database, TreeGenes. Database J. Biol. Databases Curation 2019: baz043 (2019)
[j9]
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Shawna Spoor, Chun-Huai Cheng, Lacey-Anne Sanderson, Bradford Condon, Abdullah Almsaeed, Ming Chen, Anthony Bretaudeau, Helena Rasche, Sook Jung, Dorrie Main, Kirstin E. Bett, Margaret Staton, Jill L. Wegrzyn, F. Alex Feltus, Stephen P. Ficklin:
Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases. Database J. Biol. Databases Curation 2019: baz077 (2019)
[j8]
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  - journals/biodb/BubleJHYCLFHCSW19
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Katheryn Buble, Sook Jung, Jodi L. Humann, Jing Yu, Chun-Huai Cheng, Taein Lee, Stephen P. Ficklin, Heidi Hough, Bradford Condon, Margaret E. Staton, Jill L. Wegrzyn, Dorrie Main:
Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps. Database J. Biol. Databases Curation 2019: baz100 (2019)
[j7]
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  - journals/gpb/CaballeroW19
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Madison Caballero, Jill L. Wegrzyn:
gFACs: Gene Filtering, Analysis, and Conversion to Unify Genome Annotations Across Alignment and Gene Prediction Frameworks. Genom. Proteom. Bioinform. 17(3): 305-310 (2019)
[j6]
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  - journals/nar/JungLCBZYHFGSFR19
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Sook Jung, Taein Lee, Chun-Huai Cheng, Katheryn Buble, Ping Zheng, Jing Yu, Jodi L. Humann, Stephen P. Ficklin, Ksenija Gasic, Kristin Scott, Morgan Frank, Sushan Ru, Heidi Hough, Kate Evans, Cameron Peace, Mercy A. Olmstead, Lisa W. DeVetter, James McFerson, Michael Coe, Jill L. Wegrzyn, Margaret E. Staton, Albert G. Abbott, Dorrie Main:
15 years of GDR: New data and functionality in the Genome Database for Rosaceae. Nucleic Acids Res. 47(Database-Issue): D1137-D1145 (2019)
2018
[j5]
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  - journals/biodb/FalkHGBRZBRFSFJ18
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Taylor Falk, Nic Herndon, Emily S. Grau, Sean Buehler, Peter Richter, Sumaira Zaman, Eliza M. Baker, Risharde Ramnath, Stephen P. Ficklin, Margaret Staton, Frank Alex Feltus, Sook Jung, Doreen Main, Jill L. Wegrzyn:
Growing and cultivating the forest genomics database, TreeGenes. Database J. Biol. Databases Curation 2018: bay084 (2018)
[j4]
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  - journals/biodb/HarperCCJPWAABB18
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Lisa C. Harper, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Sook Jung, Monica Poelchau, Ramona L. Walls, Carson M. Andorf, Elizabeth Arnaud, Tanya Z. Berardini, Clayton L. Birkett, Steven B. Cannon, James D. Carson, Bradford Condon, Laurel Cooper, Nathan A. Dunn, Christine G. Elsik, Andrew D. Farmer, Stephen P. Ficklin, David M. Grant, Emily S. Grau, Nic Herndon, Zhi-Liang Hu, Jodi L. Humann, Pankaj Jaiswal, Clément Jonquet, Marie-Angélique Laporte, Pierre Larmande, Gerard R. Lazo, Fiona McCarthy, Naama Menda, Christopher J. Mungall, Monica C. Munoz-Torres, Sushma Naithani, Rex T. Nelson, Daureen Nesdill, Carissa A. Park, James M. Reecy, Leonore Reiser, Lacey-Anne Sanderson, Taner Z. Sen, Margaret Staton, Sabarinath Subramaniam, Marcela Karey Tello-Ruiz, Victor Unda, Deepak R. Unni, Liya Wang, Doreen Ware, Jill L. Wegrzyn, Jason Williams, Margaret Woodhouse, Jing Yu, Doreen Main:
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database J. Biol. Databases Curation 2018: bay088 (2018)
[p1]
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  - series/ssw/HerndonFGJFMSW18
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Nic Herndon, Taylor Falk, Emily S. Grau, Sook Jung, Stephen P. Ficklin, Dorrie Main, Margaret E. Staton, Jill L. Wegrzyn:
Association Mapping for Forest Trees with CartograTree. Application of Semantic Technology in Biodiversity Science 2018: 137-149
2017
[j3]
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  - journals/biodb/ChenHAZWFS17
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Ming Chen, Nathan Henry, Abdullah Almsaeed, Xiao Zhou, Jill L. Wegrzyn, Stephen P. Ficklin, Margaret Staton:
New extension software modules to enhance searching and display of transcriptome data in Tripal databases. Database J. Biol. Databases Curation 2017: bax052 (2017)
2016
[i2]
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  - journals/peerjpre/HerndonGBDVSW16
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Nic Herndon, Emily S. Grau, Iman Batra, Steven A. Demurjian, Hans A. Vasquez-Gross, Margaret E. Staton, Jill L. Wegrzyn:
CartograTree: Enabling landscape genomics for forest trees. PeerJ Prepr. 4: e2345 (2016)
2015
[i1]
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  - journals/f1000research/ChakrabortyBWBRLANWD15
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Sandeep Chakraborty, Monica Britton, Jill L. Wegrzyn, Timothy Butterfield, Basuthkar J. Rao, Charles A. Leslie, Mallikarjuna Aradhaya, David B. Neale, Keith Woeste, Abhay Dandekar:
YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut. F1000Research 4: 155 (2015)

2000 – 2009

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2009
[j2]
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  - journals/bioinformatics/WegrzynLLN09
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Jill L. Wegrzyn, Jennifer M. Lee, John Liechty, David B. Neale:
PineSAP - sequence alignment and SNP identification pipeline. Bioinform. 25(19): 2609-2610 (2009)
2008
[j1]
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  - journals/bmcbi/WegrzynDVH08
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Jill L. Wegrzyn, Thomas M. Drudge, Faramarz Valafar, Vivian Hook:
Bioinformatic analyses of mammalian 5'-UTR sequence properties of mRNAs predicts alternative translation initiation sites. BMC Bioinform. 9 (2008)

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