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Krishna R. Kalari
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2020 – today
- 2024
- [i1]Sobhan Hemati, Krishna R. Kalari, Hamid R. Tizhoosh:
A Short Survey on Set-Based Aggregation Techniques for Single-Vector WSI Representation in Digital Pathology. CoRR abs/2409.04615 (2024) - 2020
- [j10]Wenjiang Deng
, Tian Mou, Krishna R. Kalari, Nifang Niu, Liewei Wang, Yudi Pawitan, Trung-Nghia Vu
Alternating EM algorithm for a bilinear model in isoform quantification from RNA-seq data. Bioinform. 36(3): 805-812 (2020)
2010 – 2019
- 2019
- [j9]Trung-Nghia Vu
Cell-level somatic mutation detection from single-cell RNA sequencing. Bioinform. 35(22): 4679-4687 (2019) - 2018
- [j8]Trung-Nghia Vu
Isoform-level gene expression patterns in single-cell RNA-sequencing data. Bioinform. 34(14): 2392-2400 (2018) - [j7]Saurabh Baheti, Xiaojia Tang, Daniel R. O'Brien, Nicholas Chia, Lewis R. Roberts
HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data. BMC Bioinform. 19(1): 271:1-271:11 (2018) - 2016
- [j6]Khader Shameer, Lokesh P. Tripathi
Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment. Briefings Bioinform. 17(5): 841-862 (2016) - [j5]Trung-Nghia Vu
Beta-Poisson model for single-cell RNA-seq data analyses. Bioinform. 32(14): 2128-2135 (2016) - [c1]Arjun P. Athreya, Alan J. Gaglio, Zbigniew T. Kalbarczyk, Ravishankar K. Iyer, Junmei Cairns, Krishna R. Kalari
Unsupervised single-cell analysis in triple-negative breast cancer: A case study. BIBM 2016: 556-563 - 2014
- [j4]Krishna R. Kalari
MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing. BMC Bioinform. 15: 224 (2014) - 2012
- [j3]Yan W. Asmann, Sumit Middha
TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data. Bioinform. 28(2): 277-278 (2012)
2000 – 2009
- 2008
- [j2]Krishna R. Kalari
A knowledge-based approach to predict intragenic deletions or duplications. Bioinform. 24(18): 1975-1979 (2008) - 2006
- [j1]Krishna R. Kalari, Melanie Casavant, Thomas B. Bair, Henry L. Keen, Josep M. Comeron, Thomas L. Casavant, Todd E. Scheetz:
First Exons and Introns - A Survey of GC Content and Gene Structure in the Human Genome. Silico Biol. 6(3): 237-242 (2006)
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