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Todd J. Vision
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2010 – 2019
- 2019
- [j11]Prashanti Manda, Alexander Hahn, Katherine Beekman, Todd J. Vision:
Avoiding "conflicts of interest": a computational approach to scheduling parallel conference tracks and its human evaluation. PeerJ Comput. Sci. 5: e234 (2019) - [i2]Prashanti Manda
, Alexander Hahn, Katherine Lamm, Scott Provan, Todd J. Vision
Avoiding "conflicts of interest": A computational approach to scheduling parallel conference tracks and its human evaluation. PeerJ Prepr. 7: e27496 (2019) - 2018
- [j10]Wasila M. Dahdul
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. Database J. Biol. Databases Curation 2018: bay110 (2018) - [c14]Paula M. Mabee, James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Christopher J. Mungall, Todd J. Vision:
Reasoning over Anatomical Homology in the Phenoscape KB. ICBO 2018 - [c13]Prashanti Manda, Todd J. Vision:
On the Statistical Sensitivity of Semantic Similarity Metrics. ICBO 2018 - [p2]Ian Braun, James P. Balhoff, Tanya Z. Berardini, Laurel Cooper, Georgios V. Gkoutos, Lisa C. Harper, Eva Huala, Pankaj Jaiswal, Toni Kazic, Hilmar Lapp
'Computable' Phenotypes Enable Comparative and Predictive Phenomics Among Plant Species and Across Domains of Life. Application of Semantic Technology in Biodiversity Science 2018: 187-205 - [p1]Paula M. Mabee, Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp
Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology. Application of Semantic Technology in Biodiversity Science 2018: 207-224 - 2017
- [c12]Prashanti Manda, Todd J. Vision:
Evolution of anatomical concept usage over time: mining 200 years of biodiversity literature. SBD@SIGMOD 2017: 4:1-4:6 - 2016
- [c11]Prashanti Manda, James P. Balhoff, Todd J. Vision:
Measuring the Importance of Annotation Granularity to the Detection of Semantic Similarity Between Phenotype Profiles. ICBO/BioCreative 2016 - [c10]Prashanti Manda, Christopher J. Mungall, James P. Balhoff, Hilmar Lapp, Todd J. Vision:
Investigating the Importance of Anatomical Homology for Cross-Species Phenotype Comparisons Using Semantic Similarity. PSB 2016: 132-143 - 2015
- [j9]Shea Swauger
What Factors Influence Where Researchers Deposit their Data? A Survey of Researchers Submitting to Data Repositories. Int. J. Digit. Curation 10(1): 68-81 (2015) - 2014
- [j8]James P. Balhoff
Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex. J. Biomed. Semant. 5: 45 (2014) - [j7]Martin Fenner, Laurel L. Haak
ODIN: the ORCID and DataCite interoperability network. Int. J. Knowl. Learn. 9(4): 305-325 (2014) - 2013
- [j6]Peter E. Midford
The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes. J. Biomed. Semant. 4: 34 (2013) - 2012
- [i1]Éva Czabarka, László A. Székely, Todd J. Vision
Minimizing the number of episodes and Gallai's theorem on intervals. CoRR abs/1209.5699 (2012) - 2011
- [j5]William Michener
DataONE: Data Observation Network for Earth - Preserving Data and Enabling Innovation in the Biological and Environmental Sciences. D Lib Mag. 17(1/2) (2011) - [c9]Heather A. Piwowar
Beginning to track 1000 datasets from public repositories into the published literature. ASIST 2011: 1-4 - [c8]James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee:
Employing Reasoning within the Phenoscape Knowledgebase. ICBO 2011 - [c7]Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee:
Phenoscape: Use Cases and Anatomy Ontology Requirements for Linking Evolutionary and Model Organism Phenotypes. ICBO 2011 - [c6]Todd J. Vision, Judith A. Blake, Hilmar Lapp, Paula M. Mabee, Monte Westerfield:
Similarity Between Semantic Description Sets: Addressing Needs Beyond Data Integration. LISC 2011 - 2010
- [c5]Nicholas M. Weber, Heather A. Piwowar
Evaluating data citation and sharing policies in the environmental sciences. ASIST 2010: 1-2 - [c4]J. Gordon Burleigh, Mukul S. Bansal
Inferring species trees from gene duplication episodes. BCB 2010: 198-203
2000 – 2009
- 2009
- [j4]Fuxia Cheng, Stefanie Hartmann, Mayetri Gupta
A hierarchical model for incomplete alignments in phylogenetic inference. Bioinform. 25(5): 592-598 (2009) - 2007
- [j3]Kyle J. Gaulton, Karen L. Mohlke, Todd J. Vision
A computational system to select candidate genes for complex human traits. Bioinform. 23(9): 1132-1140 (2007) - [j2]Bradley M. Hemminger
Comparison of full-text searching to metadata searching for genes in two biomedical literature cohorts. J. Assoc. Inf. Sci. Technol. 58(14): 2341-2352 (2007) - 2006
- [j1]Stefanie Hartmann, Dihui Lu, Jason Phillips, Todd J. Vision
Phytome: a platform for plant comparative genomics. Nucleic Acids Res. 34(Database-Issue): 724-730 (2006) - 2003
- [c3]Jun Huan, Jan F. Prins, Wei Wang
Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss. CSB 2003: 484-485 - [c2]Peter P. Calabrese, Sugata Chakravarty, Todd J. Vision:
Fast identification and statistical evaluation of segmental homologies in comparative maps. ISMB (Supplement of Bioinformatics) 2003: 74-80 - 2000
- [c1]Daniel G. Brown, Todd J. Vision, Steven D. Tanksley:
Selective mapping: a discrete optimization approach to selecting a population subset for use in a high-density genetic mapping project. SODA 2000: 419-428
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