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Rhiju Das
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2020 – today
- 2022
- [j14]Hannah K. Wayment-Steele
, Wipapat Kladwang, Andrew M. Watkins, Do Soon Kim, Bojan Tunguz, Walter Reade
Deep learning models for predicting RNA degradation via dual crowdsourcing. Nat. Mac. Intell. 4(12): 1174-1184 (2022) - 2021
- [i3]Hannah K. Wayment-Steele, Wipapat Kladwang, Andrew M. Watkins, Do Soon Kim, Bojan Tunguz, Walter Reade, Maggie Demkin, Jonathan Romano
Predictive models of RNA degradation through dual crowdsourcing. CoRR abs/2110.07531 (2021)
2010 – 2019
- 2019
- [j13]Marcin Magnus
RNA 3D structure prediction guided by independent folding of homologous sequences. BMC Bioinform. 20(1): 512:1-512:15 (2019) - [j12]Rohan V. Koodli, Benjamin Keep
EternaBrain: Automated RNA design through move sets and strategies from an Internet-scale RNA videogame. PLoS Comput. Biol. 15(6) (2019) - 2018
- [j11]Joseph D. Yesselman, Siqi Tian, Xin Liu
Updates to the RNA mapping database (RMDB), version 2. Nucleic Acids Res. 46(Database-Issue): D375-D379 (2018) - [i2]Jade Shi, Rhiju Das, Vijay S. Pande:
SentRNA: Improving computational RNA design by incorporating a prior of human design strategies. CoRR abs/1803.03146 (2018) - 2017
- [j10]Siqi Tian, Rhiju Das:
Primerize-2D: automated primer design for RNA multidimensional chemical mapping. Bioinform. 33(9): 1405-1406 (2017) - 2015
- [j9]Seungmyung Lee, Hanjoo Kim, Siqi Tian, Taehoon Lee, Sungroh Yoon, Rhiju Das
Automated band annotation for RNA structure probing experiments with numerous capillary electrophoresis profiles. Bioinform. 31(17): 2808-2815 (2015) - [j8]Joseph D. Yesselman, Rhiju Das
RNA-Redesign: a web server for fixed-backbone 3D design of RNA. Nucleic Acids Res. 43(Webserver-Issue): W498-W501 (2015) - [j7]Siqi Tian, Joseph D. Yesselman, Pablo Cordero, Rhiju Das
Primerize: automated primer assembly for transcribing non-coding RNA domains. Nucleic Acids Res. 43(Webserver-Issue): W522-W526 (2015) - [j6]Pablo Cordero, Rhiju Das
Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis. PLoS Comput. Biol. 11(11) (2015) - 2014
- [j5]Fang-Chieh Chou, Jan Lipfert
Blind Predictions of DNA and RNA Tweezers Experiments with Force and Torque. PLoS Comput. Biol. 10(8) (2014) - 2013
- [j4]Hanjoo Kim, Pablo Cordero, Rhiju Das
HiTRACE-Web: an online tool for robust analysis of high-throughput capillary electrophoresis. Nucleic Acids Res. 41(Webserver-Issue): 492-498 (2013) - 2012
- [j3]Pablo Cordero, Julius B. Lucks, Rhiju Das
An RNA Mapping DataBase for curating RNA structure mapping experiments. Bioinform. 28(22): 3006-3008 (2012) - 2011
- [j2]Sungroh Yoon, Jinkyu Kim, Justine Hum, Hanjoo Kim, Seunghyun Park, Wipapat Kladwang, Rhiju Das
HiTRACE: high-throughput robust analysis for capillary electrophoresis. Bioinform. 27(13): 1798-1805 (2011) - [i1]Pablo Cordero, Julius B. Lucks, Rhiju Das:
The Stanford RNA Mapping Database for sharing and visualizing RNA structure mapping experiments. CoRR abs/1110.0235 (2011)
2000 – 2009
- 2009
- [j1]Jinkyu Kim, Seunghak Yu, Byonghyo Shim
A robust peak detection method for RNA structure inference by high-throughput contact mapping. Bioinform. 25(9): 1137-1144 (2009) - 2007
- [c1]Ben Blum, Michael I. Jordan, David E. Kim, Rhiju Das, Philip Bradley, David Baker:
Feature Selection Methods for Improving Protein Structure Prediction with Rosetta. NIPS 2007: 137-144
Coauthor Index
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